Wall clock time and date at job start Tue Mar 31 2020 00:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47595 * 2 1 4 4 C 1.52996 * 109.47595 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47171 * 304.99783 * 4 3 2 6 6 C 1.52999 * 109.47167 * 64.99466 * 4 3 2 7 7 C 1.52996 * 109.47340 * 184.99547 * 4 3 2 8 8 H 1.08997 * 109.47226 * 299.99828 * 7 4 3 9 9 C 1.52999 * 109.47057 * 59.99851 * 7 4 3 10 10 O 1.42905 * 109.47114 * 55.00379 * 9 7 4 11 11 N 1.46505 * 109.47259 * 180.02562 * 7 4 3 12 12 C 1.38815 * 119.99872 * 155.00308 * 11 7 4 13 13 C 1.39795 * 119.58978 * 359.97438 * 12 11 7 14 14 C 1.38592 * 119.49615 * 180.02562 * 13 12 11 15 15 C 1.38397 * 118.67826 * 359.97438 * 14 13 12 16 16 C 1.40559 * 119.14805 * 0.02562 * 15 14 13 17 17 C 1.41317 * 119.78326 * 180.28127 * 16 15 14 18 18 H 1.07998 * 119.99795 * 359.71829 * 17 16 15 19 19 C 1.40020 * 120.00268 * 179.72614 * 17 16 15 20 20 N 1.30752 * 119.99675 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00241 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47134 * 90.00112 * 21 19 17 23 23 H 1.48500 * 109.47445 * 209.99476 * 21 19 17 24 24 H 1.48496 * 109.47369 * 330.00053 * 21 19 17 25 25 N 1.31956 * 119.58128 * 179.97438 * 12 11 7 26 26 H 1.08998 * 109.47050 * 59.99974 * 1 2 3 27 27 H 1.08990 * 109.47470 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47045 * 300.00605 * 1 2 3 29 29 H 1.08999 * 109.47045 * 239.99394 * 2 1 3 30 30 H 1.09004 * 109.46932 * 119.99598 * 2 1 3 31 31 H 1.08999 * 109.47419 * 59.99623 * 3 2 1 32 32 H 1.09004 * 109.46653 * 299.99769 * 3 2 1 33 33 H 1.08996 * 109.47349 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47245 * 300.00491 * 6 4 3 35 35 H 1.09010 * 109.47242 * 59.99969 * 6 4 3 36 36 H 1.09002 * 109.47217 * 174.99607 * 9 7 4 37 37 H 1.08997 * 109.47265 * 295.00031 * 9 7 4 38 38 H 0.96693 * 113.99848 * 180.02562 * 10 9 7 39 39 H 0.97001 * 119.99904 * 334.99778 * 11 7 4 40 40 H 1.08001 * 120.25000 * 0.02562 * 13 12 11 41 41 H 1.07991 * 120.66369 * 180.02562 * 14 13 12 42 42 H 1.07992 * 120.42668 * 180.02562 * 15 14 13 43 43 H 0.97000 * 119.99838 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0806 0.8325 -1.3063 7 6 4.0800 2.8794 0.1262 8 1 3.7171 3.4687 -0.7158 9 6 3.5695 3.4894 1.4332 10 8 3.9471 2.6530 2.5287 11 7 5.5451 2.8795 0.1262 12 6 6.2391 4.0092 -0.2850 13 6 5.5314 5.1419 -0.6978 14 6 6.2263 6.2685 -1.1085 15 6 7.6098 6.2366 -1.0963 16 6 8.2640 5.0677 -0.6702 17 6 9.6762 5.0225 -0.6467 18 1 10.2493 5.8827 -0.9598 19 6 10.3326 3.8625 -0.2177 20 7 9.6387 2.8212 0.1617 21 14 12.1993 3.8025 -0.1873 22 1 12.6881 4.2693 1.1349 23 1 12.6536 2.4078 -0.4186 24 1 12.7403 4.6827 -1.2540 25 7 7.5586 4.0003 -0.2812 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 5.1706 0.8321 -1.3057 34 1 3.7173 -0.1912 -1.3959 35 1 3.7176 1.4218 -2.1485 36 1 4.0041 4.4801 1.5660 37 1 2.4832 3.5711 1.3961 38 1 3.6555 2.9789 3.3911 39 1 6.0301 2.0901 0.4137 40 1 4.4514 5.1390 -0.6968 41 1 5.6987 7.1539 -1.4308 42 1 8.1795 7.0987 -1.4101 43 1 10.0934 2.0177 0.4593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261511174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:35 Heat of formation + Delta-G solvation = -52.725107 kcal Electronic energy + Delta-G solvation = -22054.423973 eV Core-core repulsion = 18904.926483 eV Total energy + Delta-G solvation = -3149.497490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46589 -39.18387 -36.84716 -36.05415 -34.98426 -32.96908 -32.17596 -30.57764 -29.14204 -27.32664 -27.07816 -24.33891 -23.41584 -22.79628 -21.61713 -20.78238 -19.22663 -18.29871 -17.83744 -16.80248 -16.48542 -16.28292 -16.22780 -15.76473 -15.33205 -15.00108 -14.67579 -14.48707 -14.28069 -13.99333 -13.69638 -13.38746 -13.33041 -13.02406 -12.86676 -12.71899 -12.64016 -12.53333 -12.27441 -12.13809 -11.88835 -11.75947 -11.47958 -11.41084 -11.33394 -11.12999 -10.79035 -10.57484 -9.81810 -9.40846 -8.22460 -8.20677 -6.46749 1.08079 1.37705 1.40769 1.54253 1.58992 2.25211 2.65681 2.93978 3.48954 3.74829 3.94439 4.04096 4.10293 4.27420 4.35960 4.38992 4.46722 4.49909 4.60048 4.64556 4.75473 4.85490 4.89363 4.92996 4.96643 5.00249 5.02567 5.07915 5.13457 5.20671 5.24095 5.32894 5.36950 5.46196 5.56182 5.58290 5.74169 5.98433 6.11373 6.24425 6.60789 6.86301 6.92832 6.99295 7.26180 8.38097 8.53546 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.004230 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.295056 B = 6617.637297 C = 7121.453566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.081 4.081 5 H 0.068 0.932 6 C -0.142 4.142 7 C 0.166 3.834 8 H 0.085 0.915 9 C 0.064 3.936 10 O -0.579 6.579 11 N -0.717 5.717 12 C 0.399 3.601 13 C -0.368 4.368 14 C -0.029 4.029 15 C -0.348 4.348 16 C 0.260 3.740 17 C -0.473 4.473 18 H 0.085 0.915 19 C 0.025 3.975 20 N -0.751 5.751 21 Si 0.986 3.014 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.256 1.256 25 N -0.568 5.568 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.388 0.612 39 H 0.388 0.612 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.078 -4.678 1.680 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.142 4.142 4 C -0.100 4.100 5 H 0.087 0.913 6 C -0.200 4.200 7 C 0.060 3.940 8 H 0.103 0.897 9 C -0.015 4.015 10 O -0.386 6.386 11 N -0.350 5.350 12 C 0.158 3.842 13 C -0.394 4.394 14 C -0.054 4.054 15 C -0.371 4.371 16 C 0.133 3.867 17 C -0.505 4.505 18 H 0.103 0.897 19 C -0.196 4.196 20 N -0.374 5.374 21 Si 0.806 3.194 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.180 1.180 25 N -0.291 5.291 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.237 0.763 39 H 0.222 0.778 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.118 0.882 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.568 -5.900 1.504 15.789 hybrid contribution 0.559 0.952 0.320 1.150 sum -14.009 -4.948 1.824 14.969 Atomic orbital electron populations 1.21752 0.94995 1.01916 1.02017 1.21538 0.96396 0.96220 1.01912 1.21614 0.92250 0.97841 1.02535 1.21178 0.96780 0.93879 0.98188 0.91341 1.21814 1.00019 1.01150 0.96996 1.21098 0.79346 0.97792 0.95785 0.89712 1.22747 0.98779 0.92515 0.87441 1.86474 1.82263 1.51698 1.18176 1.44280 1.04591 1.13446 1.72637 1.18994 0.89672 0.86883 0.88645 1.20941 0.98898 0.96124 1.23393 1.20998 0.93413 0.96990 0.93949 1.21673 0.95233 1.00432 1.19768 1.18676 0.94050 0.86870 0.87122 1.19927 0.90827 1.00374 1.39403 0.89676 1.26963 1.05472 0.94359 0.92832 1.70272 1.38657 1.02374 1.26058 0.85166 0.75910 0.78612 0.79687 1.18879 1.19342 1.17997 1.68196 1.04173 1.29708 1.26977 0.92464 0.92362 0.92542 0.91916 0.92514 0.91069 0.91371 0.94945 0.91076 0.92871 0.95458 0.90261 0.76307 0.77834 0.86333 0.85338 0.88164 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.11 5.69 30.59 0.17 -1.94 16 3 C -0.10 -2.01 4.47 30.59 0.14 -1.87 16 4 C -0.08 -2.08 1.83 -10.80 -0.02 -2.10 16 5 H 0.07 1.97 7.56 -2.38 -0.02 1.95 16 6 C -0.14 -3.82 8.79 71.98 0.63 -3.18 16 7 C 0.17 5.10 1.63 44.99 0.07 5.18 16 8 H 0.09 2.61 6.43 -2.39 -0.02 2.59 16 9 C 0.06 1.76 6.26 71.98 0.45 2.21 16 10 O -0.58 -16.06 12.73 -148.98 -1.90 -17.96 16 11 N -0.72 -29.78 4.49 -324.46 -1.46 -31.24 16 12 C 0.40 20.01 7.63 133.42 1.02 21.03 16 13 C -0.37 -16.72 8.84 22.73 0.20 -16.52 16 14 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 15 C -0.35 -18.26 9.83 22.87 0.22 -18.04 16 16 C 0.26 15.29 6.55 40.18 0.26 15.55 16 17 C -0.47 -27.10 9.14 23.46 0.21 -26.89 16 18 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 19 C 0.03 1.35 5.50 85.29 0.47 1.82 16 20 N -0.75 -42.20 11.46 21.84 0.25 -41.95 16 21 Si 0.99 39.92 29.56 68.60 2.03 41.95 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 N -0.57 -33.07 7.89 -186.59 -1.47 -34.54 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.08 6.57 -2.39 -0.02 1.07 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.28 6.28 -2.39 -0.02 1.27 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.03 1.05 7.44 -2.39 -0.02 1.03 16 34 H 0.07 1.60 6.57 -2.39 -0.02 1.59 16 35 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.03 0.87 7.76 -2.39 -0.02 0.85 16 37 H 0.08 1.60 6.60 -2.39 -0.02 1.58 16 38 H 0.39 7.23 9.12 -74.06 -0.68 6.56 16 39 H 0.39 17.31 8.51 -92.71 -0.79 16.52 16 40 H 0.12 4.56 6.15 -2.91 -0.02 4.55 16 41 H 0.13 4.83 8.06 -2.92 -0.02 4.81 16 42 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 43 H 0.27 14.00 8.29 -92.71 -0.77 13.23 16 Total: -1.00 -68.54 343.74 1.78 -66.76 By element: Atomic # 1 Polarization: 44.69 SS G_CDS: -0.45 Total: 44.24 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 4.78 Total: -27.26 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -2.68 Total: -107.73 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -1.90 Total: -17.96 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -68.54 1.78 -66.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261511174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.033 kcal (2) G-P(sol) polarization free energy of solvation -68.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds