Wall clock time and date at job start Tue Mar 31 2020 00:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47314 * 2 1 4 4 C 1.52999 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47014 * 55.00231 * 4 3 2 6 6 C 1.53001 * 109.47260 * 295.00203 * 4 3 2 7 7 C 1.52995 * 109.47128 * 174.99965 * 4 3 2 8 8 H 1.09000 * 109.47388 * 63.20151 * 7 4 3 9 9 C 1.52996 * 109.47458 * 183.20593 * 7 4 3 10 10 O 1.42900 * 109.47203 * 55.46363 * 9 7 4 11 11 N 1.46502 * 109.47205 * 303.20488 * 7 4 3 12 12 C 1.38820 * 120.00148 * 154.99829 * 11 7 4 13 13 C 1.39794 * 119.58566 * 0.02562 * 12 11 7 14 14 C 1.38599 * 119.49262 * 179.97438 * 13 12 11 15 15 C 1.38388 * 118.67823 * 359.97438 * 14 13 12 16 16 C 1.40554 * 119.15498 * 0.02562 * 15 14 13 17 17 C 1.41312 * 119.78880 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99950 * 0.02562 * 17 16 15 19 19 C 1.40028 * 120.00061 * 179.97438 * 17 16 15 20 20 N 1.30744 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47145 * 90.00259 * 21 19 17 23 23 H 1.48497 * 109.47348 * 210.00397 * 21 19 17 24 24 H 1.48503 * 109.47104 * 330.00470 * 21 19 17 25 25 N 1.31962 * 119.58501 * 179.72266 * 12 11 7 26 26 H 1.08996 * 109.47084 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47063 * 299.99875 * 1 2 3 28 28 H 1.09002 * 109.46785 * 59.99963 * 1 2 3 29 29 H 1.08994 * 109.47632 * 239.99669 * 2 1 3 30 30 H 1.09002 * 109.46785 * 120.00037 * 2 1 3 31 31 H 1.09000 * 109.46744 * 59.99571 * 3 2 1 32 32 H 1.08997 * 109.46977 * 300.00468 * 3 2 1 33 33 H 1.08997 * 109.46824 * 295.56725 * 6 4 3 34 34 H 1.08998 * 109.46678 * 175.57333 * 6 4 3 35 35 H 1.08994 * 109.47098 * 55.56887 * 6 4 3 36 36 H 1.08997 * 109.47573 * 175.47168 * 9 7 4 37 37 H 1.08999 * 109.46593 * 295.46505 * 9 7 4 38 38 H 0.96704 * 113.99790 * 180.02562 * 10 9 7 39 39 H 0.97000 * 119.99812 * 334.99843 * 11 7 4 40 40 H 1.07992 * 120.25495 * 359.95461 * 13 12 11 41 41 H 1.07993 * 120.65966 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.42388 * 179.97438 * 15 14 13 43 43 H 0.97002 * 120.00083 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 4.0801 2.8794 -0.1251 8 1 3.7641 3.4546 0.7452 9 6 5.6080 2.8732 -0.2049 10 8 6.0253 2.0331 -1.2829 11 7 3.5303 3.4884 -1.3388 12 6 3.3987 4.8676 -1.4250 13 6 3.7941 5.6673 -0.3488 14 6 3.6623 7.0442 -0.4371 15 6 3.1399 7.5882 -1.5974 16 6 2.7605 6.7315 -2.6450 17 6 2.2250 7.2726 -3.8355 18 1 2.1088 8.3414 -3.9384 19 6 1.8460 6.4231 -4.8822 20 7 1.9871 5.1293 -4.7578 21 14 1.1375 7.1384 -6.4557 22 1 2.2386 7.4176 -7.4122 23 1 0.1919 6.1658 -7.0597 24 1 0.4189 8.4005 -6.1460 25 7 2.9075 5.4078 -2.5243 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.7821 1.4660 2.1442 34 1 5.1666 0.7607 1.2760 35 1 3.6528 -0.1618 1.4360 36 1 5.9671 3.8881 -0.3750 37 1 6.0190 2.4945 0.7309 38 1 6.9847 1.9814 -1.3926 39 1 3.2582 2.9278 -2.0822 40 1 4.1988 5.2157 0.5448 41 1 3.9622 7.6798 0.3828 42 1 3.0245 8.6575 -1.6964 43 1 1.7249 4.5409 -5.4831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261511175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:39 Heat of formation + Delta-G solvation = -33.288982 kcal Electronic energy + Delta-G solvation = -22198.641665 eV Core-core repulsion = 19049.986989 eV Total energy + Delta-G solvation = -3148.654677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.91440 -37.56958 -35.86268 -34.33471 -33.19137 -31.89618 -30.30743 -28.92261 -27.46167 -26.22712 -25.32713 -23.41743 -21.54378 -21.07759 -20.27069 -19.48968 -17.41658 -16.99818 -16.16484 -15.40046 -15.25525 -14.68338 -14.51440 -14.49171 -13.94393 -13.42811 -13.36704 -13.10545 -12.78857 -12.61323 -12.25711 -12.06658 -11.91289 -11.75657 -11.62996 -11.33616 -11.17329 -10.95775 -10.93050 -10.63316 -10.45185 -10.38308 -10.23473 -10.11430 -9.87517 -9.63919 -9.42121 -8.80915 -7.86091 -7.43879 -6.41277 -6.26886 -4.42541 2.91940 3.14186 3.17377 3.29389 3.34607 4.02273 4.21443 4.60924 4.77808 4.89615 5.02528 5.11786 5.30701 5.41481 5.49239 5.57125 5.61818 5.69513 5.84189 5.89117 5.92526 5.99331 6.06107 6.10003 6.14891 6.20382 6.25561 6.28043 6.37181 6.56106 6.63445 6.68932 6.91571 6.94662 7.02383 7.31147 7.65604 7.84489 7.87907 7.98922 8.23134 8.44980 8.78549 8.86428 9.19545 10.31172 10.46658 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.005170 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.642232 B = 5414.916736 C = 6240.517433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.115 4.115 4 C -0.093 4.093 5 H 0.082 0.918 6 C -0.144 4.144 7 C 0.174 3.826 8 H 0.084 0.916 9 C 0.058 3.942 10 O -0.562 6.562 11 N -0.722 5.722 12 C 0.415 3.585 13 C -0.373 4.373 14 C -0.032 4.032 15 C -0.319 4.319 16 C 0.293 3.707 17 C -0.435 4.435 18 H 0.082 0.918 19 C 0.071 3.929 20 N -0.713 5.713 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.262 1.262 25 N -0.531 5.531 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.369 0.631 39 H 0.397 0.603 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 -9.451 8.222 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.112 4.112 5 H 0.100 0.900 6 C -0.202 4.202 7 C 0.066 3.934 8 H 0.102 0.898 9 C -0.021 4.021 10 O -0.366 6.366 11 N -0.357 5.357 12 C 0.175 3.825 13 C -0.399 4.399 14 C -0.056 4.056 15 C -0.343 4.343 16 C 0.166 3.834 17 C -0.467 4.467 18 H 0.100 0.900 19 C -0.154 4.154 20 N -0.335 5.335 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.186 1.186 25 N -0.253 5.253 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.215 0.785 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.004 -10.233 7.533 12.864 hybrid contribution 0.569 0.827 -0.108 1.010 sum 2.574 -9.406 7.425 12.256 Atomic orbital electron populations 1.21773 0.96228 1.01002 1.01991 1.21569 0.95559 0.97362 1.01550 1.21648 0.94570 0.96183 1.02907 1.21282 0.95453 0.95640 0.98851 0.89996 1.21862 1.00793 1.00664 0.96873 1.20774 0.89959 0.93210 0.89467 0.89775 1.22851 0.96989 0.93810 0.88480 1.86514 1.26696 1.69787 1.53640 1.44095 1.70780 1.03403 1.17416 1.18551 0.89564 0.84149 0.90224 1.20601 1.24397 0.94065 1.00813 1.20574 0.95277 0.93926 0.95822 1.21513 1.16684 0.98623 0.97438 1.18199 0.87387 0.86308 0.91481 1.19571 1.35378 0.94341 0.97432 0.90002 1.26042 0.94769 0.94669 0.99897 1.70157 1.29878 1.03303 1.30156 0.86400 0.79356 0.79869 0.81562 1.19551 1.20277 1.18643 1.68237 1.23403 1.12807 1.20827 0.93258 0.92967 0.92563 0.92254 0.92288 0.92355 0.90873 0.92888 0.92743 0.92393 0.93179 0.94024 0.78532 0.76784 0.89396 0.89135 0.88872 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.43 5.69 -26.73 -0.15 -1.59 16 3 C -0.12 -1.59 4.57 -26.73 -0.12 -1.71 16 4 C -0.09 -1.26 1.87 -90.62 -0.17 -1.42 16 5 H 0.08 1.20 7.46 -51.93 -0.39 0.82 16 6 C -0.14 -1.57 8.65 37.16 0.32 -1.25 16 7 C 0.17 2.77 1.63 -67.93 -0.11 2.66 16 8 H 0.08 1.37 6.43 -51.93 -0.33 1.04 16 9 C 0.06 0.85 6.35 37.16 0.24 1.09 16 10 O -0.56 -8.24 12.68 -35.23 -0.45 -8.69 16 11 N -0.72 -14.75 4.37 -53.91 -0.24 -14.99 16 12 C 0.42 10.22 7.63 -155.32 -1.18 9.04 16 13 C -0.37 -8.62 8.84 -38.87 -0.34 -8.97 16 14 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 15 C -0.32 -8.23 9.83 -38.65 -0.38 -8.61 16 16 C 0.29 8.31 6.55 -85.00 -0.56 7.75 16 17 C -0.44 -12.01 9.14 -37.74 -0.34 -12.36 16 18 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 19 C 0.07 1.86 5.50 -17.34 -0.10 1.77 16 20 N -0.71 -19.34 11.46 55.55 0.64 -18.70 16 21 Si 0.90 19.09 29.56 -169.99 -5.02 14.06 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 25 N -0.53 -14.90 7.89 -10.33 -0.08 -14.98 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.62 6.47 -51.93 -0.34 0.28 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.20 7.09 -51.93 -0.37 0.84 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.56 6.85 -51.93 -0.36 0.21 16 35 H 0.06 0.57 6.37 -51.93 -0.33 0.24 16 36 H 0.05 0.83 7.74 -51.93 -0.40 0.43 16 37 H 0.04 0.50 6.85 -51.93 -0.36 0.14 16 38 H 0.37 3.78 9.12 45.56 0.42 4.20 16 39 H 0.40 8.52 8.32 -40.82 -0.34 8.18 16 40 H 0.09 1.79 6.14 -52.49 -0.32 1.47 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.09 2.24 8.06 -52.48 -0.42 1.82 16 43 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -30.54 343.52 -8.95 -39.49 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -6.04 Total: 14.72 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.93 Total: -16.08 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.32 Total: -48.67 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.45 Total: -8.69 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.54 -8.95 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261511175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.200 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds