Wall clock time and date at job start Tue Mar 31 2020 00:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52995 * 109.47311 * 2 1 4 4 C 1.53001 * 109.47542 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47260 * 305.00462 * 4 3 2 6 6 C 1.53006 * 109.46858 * 65.00218 * 4 3 2 7 7 C 1.53000 * 109.47594 * 185.00261 * 4 3 2 8 8 H 1.09009 * 109.47039 * 296.78471 * 7 4 3 9 9 C 1.53002 * 109.47131 * 176.78781 * 7 4 3 10 10 O 1.42891 * 109.46905 * 304.49102 * 9 7 4 11 11 N 1.46492 * 109.47197 * 56.78160 * 7 4 3 12 12 C 1.38825 * 120.00520 * 205.00109 * 11 7 4 13 13 C 1.39796 * 119.58039 * 0.02562 * 12 11 7 14 14 C 1.38600 * 119.49207 * 179.97438 * 13 12 11 15 15 C 1.38385 * 118.67529 * 0.27650 * 14 13 12 16 16 C 1.40557 * 119.15176 * 359.47612 * 15 14 13 17 17 C 1.41325 * 119.78408 * 180.22880 * 16 15 14 18 18 H 1.08000 * 119.99729 * 0.30233 * 17 16 15 19 19 C 1.40026 * 119.99614 * 180.29721 * 17 16 15 20 20 N 1.30744 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99364 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47419 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47172 * 120.00408 * 21 19 17 24 24 H 1.48504 * 109.46504 * 239.99888 * 21 19 17 25 25 N 1.31949 * 119.58957 * 180.02562 * 12 11 7 26 26 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46845 * 299.99706 * 1 2 3 28 28 H 1.09000 * 109.47515 * 59.99631 * 1 2 3 29 29 H 1.09004 * 109.46845 * 240.00294 * 2 1 3 30 30 H 1.09000 * 109.47515 * 120.00369 * 2 1 3 31 31 H 1.08998 * 109.47346 * 60.00168 * 3 2 1 32 32 H 1.09002 * 109.47638 * 300.00039 * 3 2 1 33 33 H 1.08998 * 109.47143 * 64.45606 * 6 4 3 34 34 H 1.09002 * 109.46988 * 184.46134 * 6 4 3 35 35 H 1.09003 * 109.46721 * 304.45302 * 6 4 3 36 36 H 1.08998 * 109.47143 * 64.49554 * 9 7 4 37 37 H 1.09005 * 109.46723 * 184.49321 * 9 7 4 38 38 H 0.96704 * 114.00085 * 180.02562 * 10 9 7 39 39 H 0.97004 * 119.99796 * 25.00541 * 11 7 4 40 40 H 1.08000 * 120.25448 * 0.02562 * 13 12 11 41 41 H 1.07992 * 120.65831 * 180.02562 * 14 13 12 42 42 H 1.08004 * 120.42362 * 179.72503 * 15 14 13 43 43 H 0.96996 * 119.99968 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8529 0.8408 6 6 4.0794 0.8331 -1.3084 7 6 4.0800 2.8795 0.1251 8 1 3.7642 3.4547 -0.7453 9 6 5.6080 2.8731 0.2051 10 8 6.0249 2.0338 1.2838 11 7 3.5300 3.4884 1.3386 12 6 3.3984 4.8677 1.4249 13 6 3.7931 5.6673 0.3482 14 6 3.6604 7.0441 0.4361 15 6 3.1427 7.5885 1.5982 16 6 2.7590 6.7314 2.6441 17 6 2.2242 7.2728 3.8350 18 1 2.1070 8.3415 3.9373 19 6 1.8463 6.4234 4.8821 20 7 1.9886 5.1297 4.7583 21 14 1.1387 7.1390 6.4559 22 1 1.0820 8.6187 6.3452 23 1 -0.2302 6.6053 6.6706 24 1 2.0027 6.7616 7.6033 25 7 2.9025 5.4076 2.5220 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.7823 1.4664 -2.1443 34 1 5.1665 0.7602 -1.2760 35 1 3.6523 -0.1616 -1.4363 36 1 6.0191 2.4938 -0.7304 37 1 5.9671 3.8882 0.3747 38 1 6.9843 1.9827 1.3941 39 1 3.2578 2.9279 2.0820 40 1 4.1975 5.2155 -0.5455 41 1 3.9589 7.6796 -0.3845 42 1 3.0312 8.6581 1.6988 43 1 1.7272 4.5414 5.4839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261511176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:42 Heat of formation + Delta-G solvation = -33.292344 kcal Electronic energy + Delta-G solvation = -22198.767974 eV Core-core repulsion = 19050.113151 eV Total energy + Delta-G solvation = -3148.654822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.91515 -37.57134 -35.86371 -34.33516 -33.19191 -31.89659 -30.30944 -28.92286 -27.46162 -26.22690 -25.32787 -23.41738 -21.54472 -21.07797 -20.27149 -19.49006 -17.41783 -16.99921 -16.16620 -15.40191 -15.25551 -14.67927 -14.51396 -14.49229 -13.94529 -13.42854 -13.37157 -13.10611 -12.79091 -12.61150 -12.25772 -12.06888 -11.91424 -11.75724 -11.63023 -11.33558 -11.18981 -10.95264 -10.92125 -10.62506 -10.45683 -10.38494 -10.23349 -10.11001 -9.86015 -9.63916 -9.43154 -8.81076 -7.86195 -7.44009 -6.41318 -6.27037 -4.42565 2.90622 3.14570 3.18926 3.29275 3.34097 4.02259 4.21432 4.60889 4.77773 4.89521 5.02488 5.11760 5.30672 5.41453 5.49221 5.57122 5.61795 5.69440 5.84173 5.89055 5.92492 5.99291 6.06081 6.09912 6.14893 6.20321 6.25524 6.28002 6.37131 6.56050 6.63406 6.68884 6.91525 6.94610 7.02407 7.31060 7.65556 7.84482 7.87854 7.98838 8.23548 8.44948 8.78535 8.86425 9.19495 10.31068 10.46595 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.005169 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.492365 B = 5415.132439 C = 6240.130771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.115 4.115 4 C -0.093 4.093 5 H 0.082 0.918 6 C -0.144 4.144 7 C 0.174 3.826 8 H 0.084 0.916 9 C 0.058 3.942 10 O -0.562 6.562 11 N -0.722 5.722 12 C 0.415 3.585 13 C -0.373 4.373 14 C -0.032 4.032 15 C -0.319 4.319 16 C 0.293 3.707 17 C -0.435 4.435 18 H 0.082 0.918 19 C 0.071 3.929 20 N -0.713 5.713 21 Si 0.903 3.097 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.275 1.275 25 N -0.531 5.531 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.369 0.631 39 H 0.397 0.603 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -9.442 -8.230 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.112 4.112 5 H 0.100 0.900 6 C -0.202 4.202 7 C 0.066 3.934 8 H 0.102 0.898 9 C -0.021 4.021 10 O -0.366 6.366 11 N -0.357 5.357 12 C 0.175 3.825 13 C -0.399 4.399 14 C -0.056 4.056 15 C -0.342 4.342 16 C 0.166 3.834 17 C -0.467 4.467 18 H 0.100 0.900 19 C -0.154 4.154 20 N -0.335 5.335 21 Si 0.728 3.272 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.200 1.200 25 N -0.253 5.253 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.215 0.785 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.016 -10.219 -7.542 12.860 hybrid contribution 0.564 0.816 0.108 0.998 sum 2.580 -9.403 -7.435 12.262 Atomic orbital electron populations 1.21773 0.96228 1.01001 1.01991 1.21567 0.95559 0.97361 1.01550 1.21648 0.94571 0.96184 1.02907 1.21284 0.95454 0.95640 0.98849 0.89996 1.21866 1.00793 1.00664 0.96873 1.20775 0.89959 0.93209 0.89468 0.89776 1.22853 0.96990 0.93819 0.88469 1.86512 1.26707 1.69828 1.53590 1.44094 1.70770 1.03402 1.17427 1.18548 0.89550 0.84151 0.90239 1.20605 1.24399 0.94077 1.00782 1.20574 0.95292 0.93926 0.95815 1.21515 1.16709 0.98609 0.97406 1.18208 0.87406 0.86299 0.91482 1.19611 1.35369 0.94372 0.97361 0.89953 1.26044 0.94755 0.94669 0.99909 1.70166 1.29872 1.03313 1.30136 0.86349 0.79022 0.80445 0.81419 1.18489 1.19980 1.19986 1.68226 1.23322 1.12814 1.20902 0.93258 0.92563 0.92968 0.92287 0.92253 0.90872 0.92355 0.92887 0.92743 0.92394 0.94021 0.93182 0.78530 0.76783 0.89392 0.89131 0.88866 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.15 0.37 -1.35 16 2 C -0.12 -1.43 5.69 -26.74 -0.15 -1.58 16 3 C -0.12 -1.59 4.57 -26.73 -0.12 -1.71 16 4 C -0.09 -1.26 1.87 -90.62 -0.17 -1.42 16 5 H 0.08 1.20 7.46 -51.93 -0.39 0.82 16 6 C -0.14 -1.57 8.65 37.16 0.32 -1.25 16 7 C 0.17 2.77 1.63 -67.93 -0.11 2.66 16 8 H 0.08 1.37 6.43 -51.92 -0.33 1.04 16 9 C 0.06 0.85 6.36 37.16 0.24 1.09 16 10 O -0.56 -8.24 12.68 -35.23 -0.45 -8.69 16 11 N -0.72 -14.75 4.37 -53.91 -0.24 -14.99 16 12 C 0.42 10.22 7.63 -155.33 -1.18 9.04 16 13 C -0.37 -8.62 8.84 -38.87 -0.34 -8.96 16 14 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 15 C -0.32 -8.23 9.83 -38.65 -0.38 -8.61 16 16 C 0.29 8.30 6.55 -85.00 -0.56 7.75 16 17 C -0.43 -12.01 9.14 -37.74 -0.34 -12.35 16 18 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 19 C 0.07 1.86 5.50 -17.34 -0.10 1.77 16 20 N -0.71 -19.33 11.46 55.55 0.64 -18.70 16 21 Si 0.90 19.09 29.56 -169.99 -5.02 14.06 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 N -0.53 -14.90 7.89 -10.33 -0.08 -14.98 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.62 6.47 -51.93 -0.34 0.28 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.20 7.09 -51.93 -0.37 0.84 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.56 6.85 -51.93 -0.36 0.21 16 35 H 0.06 0.57 6.37 -51.93 -0.33 0.24 16 36 H 0.04 0.50 6.85 -51.93 -0.36 0.14 16 37 H 0.05 0.83 7.75 -51.93 -0.40 0.43 16 38 H 0.37 3.78 9.12 45.56 0.42 4.20 16 39 H 0.40 8.52 8.32 -40.82 -0.34 8.18 16 40 H 0.09 1.79 6.14 -52.49 -0.32 1.47 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.09 2.24 8.06 -52.48 -0.42 1.82 16 43 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -30.56 343.53 -8.95 -39.51 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -6.04 Total: 14.69 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.93 Total: -16.08 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.32 Total: -48.66 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.45 Total: -8.69 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.56 -8.95 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261511176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.217 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds