Wall clock time and date at job start Tue Mar 31 2020 00:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52995 * 109.47311 * 2 1 4 4 C 1.53001 * 109.47542 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47260 * 305.00462 * 4 3 2 6 6 C 1.53006 * 109.46858 * 65.00218 * 4 3 2 7 7 C 1.53000 * 109.47594 * 185.00261 * 4 3 2 8 8 H 1.09009 * 109.47039 * 296.78471 * 7 4 3 9 9 C 1.53002 * 109.47131 * 176.78781 * 7 4 3 10 10 O 1.42891 * 109.46905 * 304.49102 * 9 7 4 11 11 N 1.46492 * 109.47197 * 56.78160 * 7 4 3 12 12 C 1.38825 * 120.00520 * 205.00109 * 11 7 4 13 13 C 1.39796 * 119.58039 * 0.02562 * 12 11 7 14 14 C 1.38600 * 119.49207 * 179.97438 * 13 12 11 15 15 C 1.38385 * 118.67529 * 0.27650 * 14 13 12 16 16 C 1.40557 * 119.15176 * 359.47612 * 15 14 13 17 17 C 1.41325 * 119.78408 * 180.22880 * 16 15 14 18 18 H 1.08000 * 119.99729 * 0.30233 * 17 16 15 19 19 C 1.40026 * 119.99614 * 180.29721 * 17 16 15 20 20 N 1.30744 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99364 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47419 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47172 * 120.00408 * 21 19 17 24 24 H 1.48504 * 109.46504 * 239.99888 * 21 19 17 25 25 N 1.31949 * 119.58957 * 180.02562 * 12 11 7 26 26 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46845 * 299.99706 * 1 2 3 28 28 H 1.09000 * 109.47515 * 59.99631 * 1 2 3 29 29 H 1.09004 * 109.46845 * 240.00294 * 2 1 3 30 30 H 1.09000 * 109.47515 * 120.00369 * 2 1 3 31 31 H 1.08998 * 109.47346 * 60.00168 * 3 2 1 32 32 H 1.09002 * 109.47638 * 300.00039 * 3 2 1 33 33 H 1.08998 * 109.47143 * 64.45606 * 6 4 3 34 34 H 1.09002 * 109.46988 * 184.46134 * 6 4 3 35 35 H 1.09003 * 109.46721 * 304.45302 * 6 4 3 36 36 H 1.08998 * 109.47143 * 64.49554 * 9 7 4 37 37 H 1.09005 * 109.46723 * 184.49321 * 9 7 4 38 38 H 0.96704 * 114.00085 * 180.02562 * 10 9 7 39 39 H 0.97004 * 119.99796 * 25.00541 * 11 7 4 40 40 H 1.08000 * 120.25448 * 0.02562 * 13 12 11 41 41 H 1.07992 * 120.65831 * 180.02562 * 14 13 12 42 42 H 1.08004 * 120.42362 * 179.72503 * 15 14 13 43 43 H 0.96996 * 119.99968 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8529 0.8408 6 6 4.0794 0.8331 -1.3084 7 6 4.0800 2.8795 0.1251 8 1 3.7642 3.4547 -0.7453 9 6 5.6080 2.8731 0.2051 10 8 6.0249 2.0338 1.2838 11 7 3.5300 3.4884 1.3386 12 6 3.3984 4.8677 1.4249 13 6 3.7931 5.6673 0.3482 14 6 3.6604 7.0441 0.4361 15 6 3.1427 7.5885 1.5982 16 6 2.7590 6.7314 2.6441 17 6 2.2242 7.2728 3.8350 18 1 2.1070 8.3415 3.9373 19 6 1.8463 6.4234 4.8821 20 7 1.9886 5.1297 4.7583 21 14 1.1387 7.1390 6.4559 22 1 1.0820 8.6187 6.3452 23 1 -0.2302 6.6053 6.6706 24 1 2.0027 6.7616 7.6033 25 7 2.9025 5.4076 2.5220 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.7823 1.4664 -2.1443 34 1 5.1665 0.7602 -1.2760 35 1 3.6523 -0.1616 -1.4363 36 1 6.0191 2.4938 -0.7304 37 1 5.9671 3.8882 0.3747 38 1 6.9843 1.9827 1.3941 39 1 3.2578 2.9279 2.0820 40 1 4.1975 5.2155 -0.5455 41 1 3.9589 7.6796 -0.3845 42 1 3.0312 8.6581 1.6988 43 1 1.7272 4.5414 5.4839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261511176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:41 Heat of formation + Delta-G solvation = -52.708911 kcal Electronic energy + Delta-G solvation = -22199.609939 eV Core-core repulsion = 19050.113151 eV Total energy + Delta-G solvation = -3149.496788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46579 -39.15247 -36.96406 -35.95840 -34.91069 -33.18093 -32.19065 -30.61092 -28.76491 -27.45684 -27.12078 -24.58123 -23.41160 -22.53070 -21.67475 -20.79631 -19.24769 -18.30585 -17.83079 -16.89531 -16.48091 -16.27874 -16.23333 -15.70573 -15.43389 -14.95928 -14.69678 -14.40624 -14.29251 -14.02611 -13.70950 -13.46303 -13.12980 -12.99286 -12.83768 -12.73009 -12.69937 -12.56021 -12.35834 -12.23504 -11.90320 -11.70609 -11.54394 -11.39322 -11.31087 -11.12859 -10.80017 -10.56756 -9.81889 -9.40860 -8.21995 -8.20932 -6.46920 1.07167 1.37708 1.40414 1.55853 1.57204 2.24834 2.67377 2.93699 3.49815 3.67936 3.95374 4.05463 4.10394 4.30978 4.36375 4.41611 4.44255 4.50868 4.55482 4.64402 4.69446 4.83343 4.88882 4.89823 4.98463 5.01937 5.05981 5.07041 5.14116 5.16652 5.24112 5.30459 5.38202 5.39269 5.56947 5.59538 5.74165 5.98327 6.11414 6.24540 6.60884 6.86295 6.92841 6.99411 7.26214 8.38069 8.53435 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.005169 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.492365 B = 5415.132439 C = 6240.130771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.112 4.112 4 C -0.083 4.083 5 H 0.069 0.931 6 C -0.139 4.139 7 C 0.165 3.835 8 H 0.085 0.915 9 C 0.065 3.935 10 O -0.580 6.580 11 N -0.716 5.716 12 C 0.400 3.600 13 C -0.368 4.368 14 C -0.029 4.029 15 C -0.348 4.348 16 C 0.260 3.740 17 C -0.473 4.473 18 H 0.085 0.915 19 C 0.025 3.975 20 N -0.751 5.751 21 Si 0.985 3.015 22 H -0.255 1.255 23 H -0.267 1.267 24 H -0.267 1.267 25 N -0.567 5.567 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.389 0.611 39 H 0.388 0.612 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -10.500 -9.598 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.150 4.150 4 C -0.102 4.102 5 H 0.088 0.912 6 C -0.196 4.196 7 C 0.059 3.941 8 H 0.102 0.898 9 C -0.014 4.014 10 O -0.387 6.387 11 N -0.349 5.349 12 C 0.158 3.842 13 C -0.394 4.394 14 C -0.053 4.053 15 C -0.371 4.371 16 C 0.133 3.867 17 C -0.505 4.505 18 H 0.103 0.897 19 C -0.196 4.196 20 N -0.374 5.374 21 Si 0.806 3.194 22 H -0.178 1.178 23 H -0.192 1.192 24 H -0.192 1.192 25 N -0.290 5.290 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.237 0.763 39 H 0.221 0.779 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.118 0.882 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.647 -11.307 -8.957 14.665 hybrid contribution 0.448 1.060 0.408 1.221 sum 3.095 -10.247 -8.549 13.699 Atomic orbital electron populations 1.21778 0.96054 1.01939 1.01259 1.21534 0.95713 0.95812 1.02427 1.21591 0.95029 0.97376 1.01010 1.21197 0.94939 0.93820 1.00205 0.91213 1.21838 1.01434 1.01300 0.95039 1.21130 0.91188 0.94393 0.87384 0.89758 1.22730 0.95647 0.92951 0.90114 1.86469 1.28787 1.69565 1.53879 1.44289 1.70218 1.01857 1.18546 1.18992 0.89156 0.85922 0.90084 1.20948 1.23144 0.94095 1.01217 1.20995 0.93781 0.94606 0.95968 1.21667 1.18369 0.98873 0.98163 1.18684 0.88220 0.87135 0.92709 1.19955 1.37105 0.94907 0.98527 0.89694 1.26960 0.94583 0.94844 1.03219 1.70274 1.30817 1.04734 1.31532 0.85125 0.78231 0.79702 0.76381 1.17816 1.19182 1.19220 1.68191 1.24875 1.13127 1.22830 0.91476 0.94374 0.92663 0.90117 0.92523 0.94528 0.92447 0.92040 0.91731 0.90906 0.90227 0.95472 0.76268 0.77852 0.86341 0.85354 0.88191 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.91 71.98 0.71 -2.58 16 2 C -0.12 -2.57 5.69 30.59 0.17 -2.39 16 3 C -0.11 -3.04 4.57 30.59 0.14 -2.90 16 4 C -0.08 -2.10 1.87 -10.79 -0.02 -2.12 16 5 H 0.07 1.98 7.46 -2.39 -0.02 1.96 16 6 C -0.14 -2.54 8.65 71.98 0.62 -1.92 16 7 C 0.16 5.08 1.63 44.99 0.07 5.15 16 8 H 0.08 2.59 6.43 -2.38 -0.02 2.58 16 9 C 0.06 1.77 6.36 71.98 0.46 2.22 16 10 O -0.58 -16.12 12.68 -148.98 -1.89 -18.01 16 11 N -0.72 -29.81 4.37 -324.46 -1.42 -31.23 16 12 C 0.40 20.06 7.63 133.42 1.02 21.07 16 13 C -0.37 -16.78 8.84 22.73 0.20 -16.58 16 14 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 15 C -0.35 -18.28 9.83 22.87 0.22 -18.05 16 16 C 0.26 15.30 6.55 40.18 0.26 15.56 16 17 C -0.47 -27.13 9.14 23.46 0.21 -26.92 16 18 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 19 C 0.03 1.36 5.50 85.29 0.47 1.83 16 20 N -0.75 -42.28 11.46 21.84 0.25 -42.03 16 21 Si 0.99 40.03 29.56 68.60 2.03 42.05 16 22 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 25 N -0.57 -33.09 7.89 -186.59 -1.47 -34.57 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.44 6.47 -2.39 -0.02 1.42 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.25 7.09 -2.39 -0.02 1.23 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.07 6.85 -2.39 -0.02 1.06 16 35 H 0.07 1.15 6.37 -2.39 -0.02 1.13 16 36 H 0.08 1.59 6.85 -2.39 -0.02 1.58 16 37 H 0.03 0.86 7.75 -2.38 -0.02 0.84 16 38 H 0.39 7.24 9.12 -74.05 -0.68 6.56 16 39 H 0.39 17.38 8.32 -92.71 -0.77 16.61 16 40 H 0.12 4.57 6.14 -2.91 -0.02 4.56 16 41 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 42 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.27 13.99 8.29 -92.71 -0.77 13.23 16 Total: -1.00 -69.02 343.53 1.85 -67.17 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -0.43 Total: 45.36 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 4.78 Total: -28.74 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -2.64 Total: -107.83 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -1.89 Total: -18.01 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.05 kcal Total: -69.02 1.85 -67.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261511176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.461 kcal (2) G-P(sol) polarization free energy of solvation -69.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds