Wall clock time and date at job start Tue Mar 31 2020 00:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00057 * 2 1 4 4 C 1.52993 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47197 * 53.04521 * 4 3 2 6 6 C 1.53008 * 109.47061 * 173.03617 * 4 3 2 7 7 N 1.46493 * 109.47106 * 184.17311 * 6 4 3 8 8 C 1.38820 * 120.00105 * 175.78741 * 7 6 4 9 9 C 1.39797 * 119.58297 * 359.97438 * 8 7 6 10 10 C 1.38595 * 119.49147 * 180.02562 * 9 8 7 11 11 C 1.38387 * 118.68145 * 0.28383 * 10 9 8 12 12 C 1.40555 * 119.14734 * 359.47483 * 11 10 9 13 13 C 1.41319 * 119.78552 * 180.23375 * 12 11 10 14 14 H 1.08005 * 119.99866 * 0.29500 * 13 12 11 15 15 C 1.40022 * 120.00292 * 180.29704 * 13 12 11 16 16 N 1.30747 * 119.99576 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00216 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47270 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47239 * 119.99797 * 17 15 13 20 20 H 1.48498 * 109.47148 * 239.99669 * 17 15 13 21 21 N 1.31958 * 119.58730 * 180.02562 * 8 7 6 22 22 C 1.52995 * 109.47484 * 293.03919 * 4 3 2 23 23 C 1.53002 * 109.47208 * 306.78452 * 22 4 3 24 24 C 1.53003 * 109.47127 * 66.78042 * 22 4 3 25 25 H 1.09003 * 109.47310 * 300.00729 * 1 2 3 26 26 H 1.09005 * 109.47228 * 60.00140 * 1 2 3 27 27 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46967 * 59.99645 * 3 2 1 29 29 H 1.09003 * 109.46683 * 300.00184 * 3 2 1 30 30 H 1.09003 * 109.46636 * 64.17263 * 6 4 3 31 31 H 1.08999 * 109.46926 * 304.17506 * 6 4 3 32 32 H 0.97007 * 120.00116 * 355.78194 * 7 6 4 33 33 H 1.08003 * 120.25468 * 359.97438 * 9 8 7 34 34 H 1.08007 * 120.66140 * 179.97438 * 10 9 8 35 35 H 1.08002 * 120.42502 * 179.72035 * 11 10 9 36 36 H 0.97010 * 119.99432 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47540 * 186.78451 * 22 4 3 38 38 H 1.09002 * 109.47104 * 66.45700 * 23 22 4 39 39 H 1.08995 * 109.47546 * 186.46102 * 23 22 4 40 40 H 1.09000 * 109.46740 * 306.45935 * 23 22 4 41 41 H 1.08999 * 109.46997 * 170.88583 * 24 22 4 42 42 H 1.08994 * 109.47014 * 290.88523 * 24 22 4 43 43 H 1.09007 * 109.46564 * 50.88719 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8491 0.5399 -0.8204 6 6 4.1570 2.5718 -0.1743 7 7 5.6131 2.4454 -0.2736 8 6 6.3916 3.5669 -0.5249 9 6 5.7769 4.8126 -0.6824 10 6 6.5560 5.9310 -0.9338 11 6 7.9281 5.7771 -1.0277 12 6 8.4871 4.4992 -0.8548 13 6 9.8871 4.3276 -0.9429 14 1 10.5241 5.1777 -1.1378 15 6 10.4483 3.0554 -0.7776 16 7 9.6771 2.0264 -0.5412 17 14 12.2987 2.8285 -0.8948 18 1 12.9419 4.1390 -1.1669 19 1 12.8126 2.2820 0.3868 20 1 12.6128 1.8840 -1.9969 21 7 7.7024 3.4436 -0.6132 22 6 3.9987 0.5819 1.3283 23 6 3.4161 1.3928 2.4876 24 6 3.5166 -0.8669 1.4265 25 1 -0.3634 0.5140 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.9039 3.1941 0.6841 31 1 3.7693 3.0316 -1.0833 32 1 6.0333 1.5780 -0.1636 33 1 4.7031 4.9026 -0.6095 34 1 6.1009 6.9024 -1.0590 35 1 8.5615 6.6288 -1.2273 36 1 10.0660 1.1452 -0.4263 37 1 5.0873 0.6067 1.3785 38 1 2.3327 1.2744 2.5055 39 1 3.8363 1.0361 3.4279 40 1 3.6644 2.4459 2.3551 41 1 3.9786 -1.3458 2.2898 42 1 2.4326 -0.8822 1.5394 43 1 3.7952 -1.4047 0.5202 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262375682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:45 Heat of formation + Delta-G solvation = -20.635627 kcal Electronic energy + Delta-G solvation = -21858.791920 eV Core-core repulsion = 18710.685934 eV Total energy + Delta-G solvation = -3148.105986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.16541 -38.08088 -36.50524 -34.26134 -33.06213 -30.68868 -30.09588 -28.63728 -27.20614 -26.64165 -25.34410 -24.46243 -22.81802 -21.30472 -20.40459 -18.91292 -17.32926 -16.70333 -16.51389 -16.14667 -15.08408 -14.83909 -14.67361 -14.56348 -14.14222 -13.99216 -13.32942 -13.11103 -12.92367 -12.68046 -12.43101 -12.01554 -11.91379 -11.85262 -11.70451 -11.60042 -11.32242 -11.17770 -10.94242 -10.63966 -10.49435 -10.43606 -10.33743 -10.13500 -9.86023 -9.60087 -9.44542 -8.83377 -7.86889 -7.46828 -6.46136 -6.28980 -4.43685 2.89781 3.14034 3.18416 3.27623 3.33177 3.55841 4.01446 4.38873 4.76586 4.88326 4.90563 5.02439 5.15050 5.15829 5.37105 5.41788 5.43749 5.46625 5.56571 5.72520 5.81761 5.86842 6.02350 6.07625 6.10556 6.15164 6.19513 6.31254 6.35042 6.52014 6.61906 6.63264 6.90102 6.93097 6.98176 7.07000 7.29092 7.63851 7.85359 7.95859 8.21270 8.41171 8.73359 8.84496 9.16486 10.28738 10.44442 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.004041 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.141641 B = 6927.399354 C = 7769.821906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.067 3.933 4 C -0.093 4.093 5 H 0.084 0.916 6 C 0.148 3.852 7 N -0.735 5.735 8 C 0.412 3.588 9 C -0.368 4.368 10 C -0.032 4.032 11 C -0.317 4.317 12 C 0.293 3.707 13 C -0.435 4.435 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.715 5.715 17 Si 0.904 3.096 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.274 1.274 21 N -0.531 5.531 22 C -0.089 4.089 23 C -0.149 4.149 24 C -0.142 4.142 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.268 0.732 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 -4.831 2.943 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C -0.010 4.010 4 C -0.111 4.111 5 H 0.102 0.898 6 C 0.022 3.978 7 N -0.372 5.372 8 C 0.172 3.828 9 C -0.394 4.394 10 C -0.057 4.057 11 C -0.341 4.341 12 C 0.165 3.835 13 C -0.467 4.467 14 H 0.101 0.899 15 C -0.154 4.154 16 N -0.337 5.337 17 Si 0.729 3.271 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.200 1.200 21 N -0.253 5.253 22 C -0.107 4.107 23 C -0.206 4.206 24 C -0.199 4.199 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.231 0.769 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.669 -5.925 3.080 15.213 hybrid contribution 0.287 0.684 -0.156 0.758 sum -13.382 -5.240 2.924 14.666 Atomic orbital electron populations 1.22715 0.81867 1.02429 0.99796 1.87977 1.18902 1.27849 1.95154 1.22541 0.93431 0.84680 1.00384 1.21410 0.93000 0.97472 0.99262 0.89783 1.20969 0.81785 0.94738 1.00333 1.44081 1.03323 1.08647 1.81189 1.18512 0.89732 0.84981 0.89547 1.20600 0.97776 0.93438 1.27557 1.20588 0.93828 0.96001 0.95240 1.21528 0.94317 0.98354 1.19850 1.18203 0.92904 0.85865 0.86479 1.19610 0.90940 0.94265 1.41876 0.89908 1.26046 0.99764 0.95926 0.93629 1.70170 1.35770 0.99426 1.28340 0.86335 0.82959 0.79381 0.78473 1.18480 1.19975 1.19969 1.68216 1.00350 1.31976 1.24759 1.21061 1.00745 0.95338 0.93580 1.21938 1.00234 1.00453 0.97967 1.21907 1.02208 0.95157 1.00678 0.94310 0.94284 0.89901 0.92578 0.93352 0.92885 0.92978 0.76892 0.89306 0.89033 0.88776 0.92036 0.90610 0.92949 0.92980 0.92255 0.93896 0.91100 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.25 7.62 -35.23 -0.27 -4.52 16 3 C 0.07 0.74 4.97 37.15 0.18 0.92 16 4 C -0.09 -1.21 2.04 -90.62 -0.18 -1.39 16 5 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 6 C 0.15 2.30 4.19 -4.04 -0.02 2.28 16 7 N -0.73 -14.79 5.43 -60.39 -0.33 -15.11 16 8 C 0.41 10.18 7.65 -155.32 -1.19 8.99 16 9 C -0.37 -8.59 9.33 -38.87 -0.36 -8.95 16 10 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 11 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 12 C 0.29 8.27 6.55 -85.00 -0.56 7.71 16 13 C -0.43 -11.94 9.14 -37.74 -0.34 -12.29 16 14 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 15 C 0.07 1.85 5.50 -17.34 -0.10 1.75 16 16 N -0.72 -19.24 11.46 55.55 0.64 -18.60 16 17 Si 0.90 18.96 29.56 -169.99 -5.02 13.94 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 N -0.53 -14.87 7.89 -10.33 -0.08 -14.95 16 22 C -0.09 -1.15 2.61 -90.62 -0.24 -1.39 16 23 C -0.15 -1.79 8.34 37.16 0.31 -1.48 16 24 C -0.14 -1.72 8.30 37.16 0.31 -1.41 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.58 6.07 -51.93 -0.32 0.26 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.82 6.28 -51.93 -0.33 0.49 16 31 H 0.05 0.82 7.69 -51.93 -0.40 0.42 16 32 H 0.40 8.05 7.58 -40.82 -0.31 7.74 16 33 H 0.09 1.84 6.68 -52.48 -0.35 1.49 16 34 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 37 H 0.08 1.14 6.90 -51.93 -0.36 0.78 16 38 H 0.05 0.56 6.54 -51.93 -0.34 0.22 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.76 6.29 -51.93 -0.33 0.44 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.83 5.95 -51.93 -0.31 0.53 16 43 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -29.91 340.13 -8.59 -38.50 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.80 Total: 9.22 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.85 Total: -13.61 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.23 Total: -48.66 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.27 Total: -4.52 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.91 -8.59 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262375682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.866 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds