Wall clock time and date at job start Tue Mar 31 2020 00:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00057 * 2 1 4 4 C 1.52993 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47197 * 53.04521 * 4 3 2 6 6 C 1.53008 * 109.47061 * 173.03617 * 4 3 2 7 7 N 1.46493 * 109.47106 * 184.17311 * 6 4 3 8 8 C 1.38820 * 120.00105 * 175.78741 * 7 6 4 9 9 C 1.39797 * 119.58297 * 359.97438 * 8 7 6 10 10 C 1.38595 * 119.49147 * 180.02562 * 9 8 7 11 11 C 1.38387 * 118.68145 * 0.28383 * 10 9 8 12 12 C 1.40555 * 119.14734 * 359.47483 * 11 10 9 13 13 C 1.41319 * 119.78552 * 180.23375 * 12 11 10 14 14 H 1.08005 * 119.99866 * 0.29500 * 13 12 11 15 15 C 1.40022 * 120.00292 * 180.29704 * 13 12 11 16 16 N 1.30747 * 119.99576 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00216 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47270 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47239 * 119.99797 * 17 15 13 20 20 H 1.48498 * 109.47148 * 239.99669 * 17 15 13 21 21 N 1.31958 * 119.58730 * 180.02562 * 8 7 6 22 22 C 1.52995 * 109.47484 * 293.03919 * 4 3 2 23 23 C 1.53002 * 109.47208 * 306.78452 * 22 4 3 24 24 C 1.53003 * 109.47127 * 66.78042 * 22 4 3 25 25 H 1.09003 * 109.47310 * 300.00729 * 1 2 3 26 26 H 1.09005 * 109.47228 * 60.00140 * 1 2 3 27 27 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46967 * 59.99645 * 3 2 1 29 29 H 1.09003 * 109.46683 * 300.00184 * 3 2 1 30 30 H 1.09003 * 109.46636 * 64.17263 * 6 4 3 31 31 H 1.08999 * 109.46926 * 304.17506 * 6 4 3 32 32 H 0.97007 * 120.00116 * 355.78194 * 7 6 4 33 33 H 1.08003 * 120.25468 * 359.97438 * 9 8 7 34 34 H 1.08007 * 120.66140 * 179.97438 * 10 9 8 35 35 H 1.08002 * 120.42502 * 179.72035 * 11 10 9 36 36 H 0.97010 * 119.99432 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47540 * 186.78451 * 22 4 3 38 38 H 1.09002 * 109.47104 * 66.45700 * 23 22 4 39 39 H 1.08995 * 109.47546 * 186.46102 * 23 22 4 40 40 H 1.09000 * 109.46740 * 306.45935 * 23 22 4 41 41 H 1.08999 * 109.46997 * 170.88583 * 24 22 4 42 42 H 1.08994 * 109.47014 * 290.88523 * 24 22 4 43 43 H 1.09007 * 109.46564 * 50.88719 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8491 0.5399 -0.8204 6 6 4.1570 2.5718 -0.1743 7 7 5.6131 2.4454 -0.2736 8 6 6.3916 3.5669 -0.5249 9 6 5.7769 4.8126 -0.6824 10 6 6.5560 5.9310 -0.9338 11 6 7.9281 5.7771 -1.0277 12 6 8.4871 4.4992 -0.8548 13 6 9.8871 4.3276 -0.9429 14 1 10.5241 5.1777 -1.1378 15 6 10.4483 3.0554 -0.7776 16 7 9.6771 2.0264 -0.5412 17 14 12.2987 2.8285 -0.8948 18 1 12.9419 4.1390 -1.1669 19 1 12.8126 2.2820 0.3868 20 1 12.6128 1.8840 -1.9969 21 7 7.7024 3.4436 -0.6132 22 6 3.9987 0.5819 1.3283 23 6 3.4161 1.3928 2.4876 24 6 3.5166 -0.8669 1.4265 25 1 -0.3634 0.5140 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.9039 3.1941 0.6841 31 1 3.7693 3.0316 -1.0833 32 1 6.0333 1.5780 -0.1636 33 1 4.7031 4.9026 -0.6095 34 1 6.1009 6.9024 -1.0590 35 1 8.5615 6.6288 -1.2273 36 1 10.0660 1.1452 -0.4263 37 1 5.0873 0.6067 1.3785 38 1 2.3327 1.2744 2.5055 39 1 3.8363 1.0361 3.4279 40 1 3.6644 2.4459 2.3551 41 1 3.9786 -1.3458 2.2898 42 1 2.4326 -0.8822 1.5394 43 1 3.7952 -1.4047 0.5202 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262375682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:44 Heat of formation + Delta-G solvation = -37.485036 kcal Electronic energy + Delta-G solvation = -21859.522565 eV Core-core repulsion = 18710.685934 eV Total energy + Delta-G solvation = -3148.836631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41555 -39.66941 -37.59556 -35.88365 -34.82385 -32.37162 -31.65938 -30.18265 -28.17757 -27.61255 -27.19602 -25.56863 -24.05566 -23.10088 -22.20623 -20.02610 -19.21158 -18.11503 -17.49940 -17.31977 -16.53175 -16.47407 -16.01781 -15.78816 -15.65182 -15.15350 -14.75701 -14.65936 -14.43333 -14.13296 -13.67402 -13.37174 -13.29458 -12.88090 -12.80250 -12.77257 -12.72445 -12.55988 -12.50173 -12.21817 -12.18949 -11.70465 -11.62044 -11.45725 -11.24620 -11.13355 -10.61646 -10.40264 -9.81630 -9.42844 -8.26694 -8.21537 -6.46737 1.06954 1.36369 1.41828 1.57039 1.57947 2.25672 2.49155 2.93863 3.07348 3.73789 3.86150 3.99036 4.07777 4.36512 4.38990 4.40836 4.44745 4.52143 4.59929 4.62384 4.64417 4.68372 4.78667 4.87873 4.92133 4.93217 5.01529 5.02132 5.09319 5.12192 5.16773 5.21117 5.32963 5.38230 5.51979 5.62581 5.73394 5.98149 6.08833 6.24308 6.30277 6.58198 6.85062 6.96109 7.23598 8.36320 8.52751 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.004041 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.141641 B = 6927.399354 C = 7769.821906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.072 3.928 4 C -0.083 4.083 5 H 0.071 0.929 6 C 0.148 3.852 7 N -0.730 5.730 8 C 0.395 3.605 9 C -0.367 4.367 10 C -0.030 4.030 11 C -0.345 4.345 12 C 0.259 3.741 13 C -0.472 4.472 14 H 0.086 0.914 15 C 0.026 3.974 16 N -0.752 5.752 17 Si 0.986 3.014 18 H -0.255 1.255 19 H -0.267 1.267 20 H -0.267 1.267 21 N -0.566 5.566 22 C -0.088 4.088 23 C -0.144 4.144 24 C -0.135 4.135 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.391 0.609 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.275 0.725 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.411 -4.846 3.225 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C -0.005 4.005 4 C -0.102 4.102 5 H 0.089 0.911 6 C 0.023 3.977 7 N -0.365 5.365 8 C 0.154 3.846 9 C -0.393 4.393 10 C -0.054 4.054 11 C -0.368 4.368 12 C 0.132 3.868 13 C -0.504 4.504 14 H 0.104 0.896 15 C -0.196 4.196 16 N -0.374 5.374 17 Si 0.806 3.194 18 H -0.179 1.179 19 H -0.192 1.192 20 H -0.192 1.192 21 N -0.289 5.289 22 C -0.107 4.107 23 C -0.201 4.201 24 C -0.192 4.192 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.226 0.774 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.142 -5.941 3.366 16.610 hybrid contribution 0.548 0.677 -0.233 0.901 sum -14.594 -5.264 3.133 15.828 Atomic orbital electron populations 1.22904 0.80117 1.03586 1.00713 1.87936 1.20765 1.27690 1.95326 1.22433 0.91539 0.85099 1.01414 1.21272 0.94723 0.95480 0.98733 0.91104 1.21164 0.79121 0.96645 1.00757 1.44265 1.04908 1.07320 1.80038 1.18972 0.89477 0.86875 0.89295 1.20958 0.99326 0.92812 1.26158 1.21008 0.93044 0.97791 0.93530 1.21690 0.95759 0.97873 1.21488 1.18681 0.93793 0.87101 0.87246 1.19956 0.91354 0.95424 1.43632 0.89633 1.26955 1.04997 0.95005 0.92620 1.70267 1.38149 1.00032 1.28974 0.85114 0.76111 0.79445 0.78705 1.17872 1.19195 1.19202 1.68185 1.01944 1.32618 1.26158 1.21023 0.99175 0.96340 0.94141 1.21895 1.01319 0.99484 0.97412 1.21829 1.02657 0.94264 1.00416 0.93144 0.93582 0.88737 0.91313 0.92538 0.92093 0.92508 0.77409 0.86301 0.85274 0.88036 0.91442 0.93303 0.91112 0.92881 0.93209 0.93547 0.90250 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -7.98 7.62 -148.98 -1.13 -9.12 16 3 C 0.07 1.43 4.97 71.98 0.36 1.78 16 4 C -0.08 -2.08 2.04 -10.79 -0.02 -2.11 16 5 H 0.07 1.97 8.10 -2.38 -0.02 1.95 16 6 C 0.15 4.43 4.19 86.38 0.36 4.79 16 7 N -0.73 -29.61 5.43 -344.98 -1.87 -31.48 16 8 C 0.39 19.66 7.65 133.42 1.02 20.68 16 9 C -0.37 -16.70 9.33 22.73 0.21 -16.49 16 10 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 11 C -0.35 -17.98 9.83 22.87 0.22 -17.76 16 12 C 0.26 15.10 6.55 40.18 0.26 15.36 16 13 C -0.47 -26.75 9.14 23.46 0.21 -26.53 16 14 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 15 C 0.03 1.36 5.50 85.29 0.47 1.83 16 16 N -0.75 -41.64 11.46 21.84 0.25 -41.39 16 17 Si 0.99 39.49 29.56 68.60 2.03 41.52 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 21 N -0.57 -32.65 7.89 -186.58 -1.47 -34.12 16 22 C -0.09 -2.23 2.61 -10.79 -0.03 -2.26 16 23 C -0.14 -3.24 8.34 71.98 0.60 -2.64 16 24 C -0.13 -3.11 8.30 71.98 0.60 -2.52 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.19 6.07 -2.39 -0.01 1.18 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.77 6.28 -2.39 -0.01 1.76 16 31 H 0.06 1.68 7.69 -2.39 -0.02 1.66 16 32 H 0.39 16.45 7.58 -92.70 -0.70 15.75 16 33 H 0.12 4.60 6.68 -2.91 -0.02 4.58 16 34 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.28 13.76 8.29 -92.70 -0.77 12.99 16 37 H 0.05 1.50 6.90 -2.39 -0.02 1.48 16 38 H 0.07 1.33 6.54 -2.39 -0.02 1.31 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.21 6.29 -2.39 -0.02 1.19 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.71 5.95 -2.39 -0.01 1.70 16 43 H 0.04 1.05 8.09 -2.38 -0.02 1.03 16 Total: -1.00 -66.01 340.13 3.84 -62.17 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.30 Total: 37.83 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 5.75 Total: -25.42 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -3.10 Total: -106.99 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.13 Total: -9.12 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -66.01 3.84 -62.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262375682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.684 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds