Wall clock time and date at job start Tue Mar 31 2020 00:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00135 * 2 1 4 4 C 1.53005 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47232 * 306.20022 * 4 3 2 6 6 C 1.52998 * 109.47006 * 186.19977 * 4 3 2 7 7 N 1.46495 * 109.47001 * 177.23057 * 6 4 3 8 8 C 1.38832 * 119.99940 * 184.32740 * 7 6 4 9 9 C 1.39798 * 119.58163 * 359.97438 * 8 7 6 10 10 C 1.38596 * 119.48598 * 179.97438 * 9 8 7 11 11 C 1.38381 * 118.68407 * 0.02562 * 10 9 8 12 12 C 1.40558 * 119.15187 * 359.97438 * 11 10 9 13 13 C 1.41313 * 119.78817 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99860 * 6.28435 * 13 12 11 15 15 C 1.40029 * 120.00178 * 186.28077 * 13 12 11 16 16 N 1.30741 * 119.99541 * 6.24306 * 15 13 12 17 17 Si 1.86797 * 119.99862 * 186.24613 * 15 13 12 18 18 H 1.48503 * 109.47121 * 94.99569 * 17 15 13 19 19 H 1.48500 * 109.46933 * 214.99071 * 17 15 13 20 20 H 1.48491 * 109.47458 * 334.99218 * 17 15 13 21 21 N 1.31956 * 119.58294 * 179.72906 * 8 7 6 22 22 C 1.52996 * 109.46849 * 66.20290 * 4 3 2 23 23 C 1.53001 * 109.47523 * 293.66797 * 22 4 3 24 24 C 1.52995 * 109.47354 * 53.66929 * 22 4 3 25 25 H 1.09003 * 109.47535 * 300.00340 * 1 2 3 26 26 H 1.09003 * 109.47412 * 59.99707 * 1 2 3 27 27 H 1.09000 * 109.47980 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46901 * 60.00389 * 3 2 1 29 29 H 1.09001 * 109.47121 * 299.99682 * 3 2 1 30 30 H 1.09006 * 109.47008 * 297.23569 * 6 4 3 31 31 H 1.09004 * 109.47136 * 57.23309 * 6 4 3 32 32 H 0.96992 * 120.00102 * 4.32738 * 7 6 4 33 33 H 1.07995 * 120.25882 * 359.95851 * 9 8 7 34 34 H 1.08004 * 120.65796 * 180.02562 * 10 9 8 35 35 H 1.08004 * 120.42637 * 179.97438 * 11 10 9 36 36 H 0.97010 * 119.99852 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47073 * 173.66550 * 22 4 3 38 38 H 1.08993 * 109.47733 * 189.19215 * 23 22 4 39 39 H 1.08997 * 109.47072 * 69.18607 * 23 22 4 40 40 H 1.09006 * 109.46829 * 309.18990 * 23 22 4 41 41 H 1.09007 * 109.47252 * 303.82814 * 24 22 4 42 42 H 1.08994 * 109.47737 * 63.82901 * 24 22 4 43 43 H 1.09001 * 109.47585 * 183.83074 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8494 0.5509 0.8302 6 6 4.1571 2.5738 0.1564 7 7 5.6154 2.4515 0.2234 8 6 6.3964 3.5757 0.4555 9 6 5.7819 4.8201 0.6235 10 6 6.5634 5.9410 0.8556 11 6 7.9379 5.7919 0.9137 12 6 8.4962 4.5141 0.7369 13 6 9.8982 4.3465 0.7931 14 1 10.5305 5.1767 1.0713 15 6 10.4677 3.1042 0.4881 16 7 9.7170 2.1348 0.0342 17 14 12.2998 2.8320 0.7298 18 1 12.5375 2.2164 2.0602 19 1 12.8103 1.9282 -0.3321 20 1 13.0082 4.1349 0.6536 21 7 7.7088 3.4552 0.5196 22 6 3.9984 0.5638 -1.3189 23 6 3.5066 -0.8827 -1.4024 24 6 3.4247 1.3657 -2.4888 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8832 3.1924 -0.6983 31 1 3.7888 3.0360 1.0723 32 1 6.0354 1.5852 0.1057 33 1 4.7067 4.9075 0.5725 34 1 6.1086 6.9115 0.9885 35 1 8.5737 6.6464 1.0927 36 1 10.1115 1.2742 -0.1775 37 1 5.0872 0.5806 -1.3662 38 1 3.9687 -1.3748 -2.2581 39 1 2.4230 -0.8918 -1.5195 40 1 3.7778 -1.4119 -0.4888 41 1 2.3387 1.4061 -2.4038 42 1 3.8286 2.3778 -2.4683 43 1 3.6979 0.8845 -3.4279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262375683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:48 Heat of formation + Delta-G solvation = -20.517748 kcal Electronic energy + Delta-G solvation = -21867.493142 eV Core-core repulsion = 18719.392267 eV Total energy + Delta-G solvation = -3148.100874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.17690 -38.08641 -36.50152 -34.25508 -33.06154 -30.69322 -30.10363 -28.64263 -27.19570 -26.64648 -25.34641 -24.46877 -22.82320 -21.30618 -20.41048 -18.89684 -17.32779 -16.72556 -16.52835 -16.14813 -15.09112 -14.84226 -14.65931 -14.55259 -14.12726 -13.98800 -13.34213 -13.11128 -12.94112 -12.70098 -12.45192 -11.98740 -11.91027 -11.85581 -11.70612 -11.58846 -11.31752 -11.17480 -10.96592 -10.65108 -10.48138 -10.44769 -10.32787 -10.10484 -9.88651 -9.59613 -9.41287 -8.83124 -7.88251 -7.45889 -6.48529 -6.31602 -4.42771 2.90563 3.13771 3.17166 3.27300 3.33524 3.55436 4.01410 4.38411 4.76865 4.87502 4.89612 5.02838 5.14513 5.15859 5.35300 5.42205 5.45443 5.46698 5.56906 5.75817 5.79057 5.88064 6.03742 6.08028 6.10784 6.16019 6.19297 6.31284 6.35687 6.51907 6.61813 6.64831 6.89911 6.93027 6.98170 7.06679 7.28552 7.63690 7.85208 7.95634 8.21292 8.40852 8.73070 8.84383 9.15893 10.27748 10.43802 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.004055 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.491545 B = 6904.035997 C = 7762.819101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.065 3.935 4 C -0.092 4.092 5 H 0.083 0.917 6 C 0.148 3.852 7 N -0.735 5.735 8 C 0.413 3.587 9 C -0.367 4.367 10 C -0.032 4.032 11 C -0.318 4.318 12 C 0.295 3.705 13 C -0.437 4.437 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.718 5.718 17 Si 0.904 3.096 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.262 1.262 21 N -0.534 5.534 22 C -0.089 4.089 23 C -0.143 4.143 24 C -0.150 4.150 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.395 0.605 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.270 0.730 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.073 -4.983 -2.256 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.298 6.298 3 C -0.011 4.011 4 C -0.111 4.111 5 H 0.102 0.898 6 C 0.022 3.978 7 N -0.373 5.373 8 C 0.173 3.827 9 C -0.393 4.393 10 C -0.056 4.056 11 C -0.341 4.341 12 C 0.168 3.832 13 C -0.469 4.469 14 H 0.101 0.899 15 C -0.151 4.151 16 N -0.340 5.340 17 Si 0.729 3.271 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.186 1.186 21 N -0.256 5.256 22 C -0.107 4.107 23 C -0.200 4.200 24 C -0.207 4.207 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.231 0.769 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.741 -6.066 -2.440 15.217 hybrid contribution 0.283 0.668 0.203 0.753 sum -13.458 -5.398 -2.237 14.672 Atomic orbital electron populations 1.22716 0.81884 1.02435 0.99799 1.87984 1.18891 1.27821 1.95142 1.22568 0.93459 0.84714 1.00406 1.21407 0.92989 0.97393 0.99329 0.89830 1.20947 0.81710 0.94714 1.00403 1.44083 1.03080 1.08591 1.81509 1.18485 0.89629 0.84980 0.89628 1.20595 0.97698 0.93448 1.27594 1.20590 0.93815 0.95998 0.95217 1.21530 0.94225 0.98192 1.20131 1.18178 0.92892 0.85820 0.86295 1.19569 0.90793 0.96582 1.39989 0.89917 1.26022 0.99734 0.95856 0.93507 1.70106 1.36025 1.02097 1.25738 0.86375 0.82800 0.79229 0.78718 1.19567 1.20276 1.18603 1.68147 1.00316 1.32103 1.25009 1.21055 1.00756 0.95300 0.93598 1.21910 1.02243 0.95150 1.00670 1.21945 1.00421 1.00464 0.97829 0.94288 0.94303 0.89898 0.93351 0.92459 0.92930 0.92984 0.76913 0.89285 0.89024 0.88762 0.91890 0.90604 0.93908 0.91040 0.93088 0.92821 0.92302 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.23 7.54 -35.23 -0.27 -4.49 16 3 C 0.07 0.72 4.97 37.16 0.18 0.91 16 4 C -0.09 -1.20 2.06 -90.62 -0.19 -1.39 16 5 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 6 C 0.15 2.31 4.17 -4.05 -0.02 2.29 16 7 N -0.74 -14.77 5.43 -60.39 -0.33 -15.10 16 8 C 0.41 10.19 7.65 -155.31 -1.19 9.00 16 9 C -0.37 -8.58 9.33 -38.87 -0.36 -8.94 16 10 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 11 C -0.32 -8.18 9.83 -38.65 -0.38 -8.56 16 12 C 0.30 8.34 6.53 -85.00 -0.55 7.79 16 13 C -0.44 -12.01 9.13 -37.74 -0.34 -12.36 16 14 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 15 C 0.07 1.92 5.48 -17.34 -0.09 1.82 16 16 N -0.72 -19.32 11.54 55.55 0.64 -18.68 16 17 Si 0.90 18.98 29.56 -169.99 -5.03 13.96 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 N -0.53 -14.94 7.97 -10.32 -0.08 -15.02 16 22 C -0.09 -1.16 2.61 -90.62 -0.24 -1.39 16 23 C -0.14 -1.73 8.28 37.16 0.31 -1.42 16 24 C -0.15 -1.82 8.48 37.16 0.32 -1.51 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 5.89 -51.93 -0.31 0.28 16 30 H 0.05 0.81 6.52 -51.93 -0.34 0.48 16 31 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 32 H 0.40 8.03 7.48 -40.82 -0.31 7.72 16 33 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 34 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 35 H 0.09 2.26 8.06 -52.48 -0.42 1.83 16 36 H 0.27 6.60 8.30 -40.82 -0.34 6.26 16 37 H 0.08 1.15 6.80 -51.93 -0.35 0.79 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.84 5.95 -51.93 -0.31 0.54 16 40 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.05 0.58 5.97 -51.93 -0.31 0.27 16 42 H 0.06 0.79 6.73 -51.93 -0.35 0.44 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -29.90 340.06 -8.57 -38.47 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.79 Total: 9.30 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.84 Total: -13.56 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.23 Total: -48.80 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.27 Total: -4.49 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.90 -8.57 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262375683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.957 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds