Wall clock time and date at job start Tue Mar 31 2020 00:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00135 * 2 1 4 4 C 1.53005 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47232 * 306.20022 * 4 3 2 6 6 C 1.52998 * 109.47006 * 186.19977 * 4 3 2 7 7 N 1.46495 * 109.47001 * 177.23057 * 6 4 3 8 8 C 1.38832 * 119.99940 * 184.32740 * 7 6 4 9 9 C 1.39798 * 119.58163 * 359.97438 * 8 7 6 10 10 C 1.38596 * 119.48598 * 179.97438 * 9 8 7 11 11 C 1.38381 * 118.68407 * 0.02562 * 10 9 8 12 12 C 1.40558 * 119.15187 * 359.97438 * 11 10 9 13 13 C 1.41313 * 119.78817 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99860 * 6.28435 * 13 12 11 15 15 C 1.40029 * 120.00178 * 186.28077 * 13 12 11 16 16 N 1.30741 * 119.99541 * 6.24306 * 15 13 12 17 17 Si 1.86797 * 119.99862 * 186.24613 * 15 13 12 18 18 H 1.48503 * 109.47121 * 94.99569 * 17 15 13 19 19 H 1.48500 * 109.46933 * 214.99071 * 17 15 13 20 20 H 1.48491 * 109.47458 * 334.99218 * 17 15 13 21 21 N 1.31956 * 119.58294 * 179.72906 * 8 7 6 22 22 C 1.52996 * 109.46849 * 66.20290 * 4 3 2 23 23 C 1.53001 * 109.47523 * 293.66797 * 22 4 3 24 24 C 1.52995 * 109.47354 * 53.66929 * 22 4 3 25 25 H 1.09003 * 109.47535 * 300.00340 * 1 2 3 26 26 H 1.09003 * 109.47412 * 59.99707 * 1 2 3 27 27 H 1.09000 * 109.47980 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46901 * 60.00389 * 3 2 1 29 29 H 1.09001 * 109.47121 * 299.99682 * 3 2 1 30 30 H 1.09006 * 109.47008 * 297.23569 * 6 4 3 31 31 H 1.09004 * 109.47136 * 57.23309 * 6 4 3 32 32 H 0.96992 * 120.00102 * 4.32738 * 7 6 4 33 33 H 1.07995 * 120.25882 * 359.95851 * 9 8 7 34 34 H 1.08004 * 120.65796 * 180.02562 * 10 9 8 35 35 H 1.08004 * 120.42637 * 179.97438 * 11 10 9 36 36 H 0.97010 * 119.99852 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47073 * 173.66550 * 22 4 3 38 38 H 1.08993 * 109.47733 * 189.19215 * 23 22 4 39 39 H 1.08997 * 109.47072 * 69.18607 * 23 22 4 40 40 H 1.09006 * 109.46829 * 309.18990 * 23 22 4 41 41 H 1.09007 * 109.47252 * 303.82814 * 24 22 4 42 42 H 1.08994 * 109.47737 * 63.82901 * 24 22 4 43 43 H 1.09001 * 109.47585 * 183.83074 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8494 0.5509 0.8302 6 6 4.1571 2.5738 0.1564 7 7 5.6154 2.4515 0.2234 8 6 6.3964 3.5757 0.4555 9 6 5.7819 4.8201 0.6235 10 6 6.5634 5.9410 0.8556 11 6 7.9379 5.7919 0.9137 12 6 8.4962 4.5141 0.7369 13 6 9.8982 4.3465 0.7931 14 1 10.5305 5.1767 1.0713 15 6 10.4677 3.1042 0.4881 16 7 9.7170 2.1348 0.0342 17 14 12.2998 2.8320 0.7298 18 1 12.5375 2.2164 2.0602 19 1 12.8103 1.9282 -0.3321 20 1 13.0082 4.1349 0.6536 21 7 7.7088 3.4552 0.5196 22 6 3.9984 0.5638 -1.3189 23 6 3.5066 -0.8827 -1.4024 24 6 3.4247 1.3657 -2.4888 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8832 3.1924 -0.6983 31 1 3.7888 3.0360 1.0723 32 1 6.0354 1.5852 0.1057 33 1 4.7067 4.9075 0.5725 34 1 6.1086 6.9115 0.9885 35 1 8.5737 6.6464 1.0927 36 1 10.1115 1.2742 -0.1775 37 1 5.0872 0.5806 -1.3662 38 1 3.9687 -1.3748 -2.2581 39 1 2.4230 -0.8918 -1.5195 40 1 3.7778 -1.4119 -0.4888 41 1 2.3387 1.4061 -2.4038 42 1 3.8286 2.3778 -2.4683 43 1 3.6979 0.8845 -3.4279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262375683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:48 Heat of formation + Delta-G solvation = -37.382911 kcal Electronic energy + Delta-G solvation = -21868.224470 eV Core-core repulsion = 18719.392267 eV Total energy + Delta-G solvation = -3148.832203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42357 -39.67757 -37.59352 -35.87915 -34.82255 -32.38033 -31.66326 -30.18884 -28.17031 -27.61979 -27.19941 -25.57233 -24.06454 -23.10226 -22.21144 -20.01508 -19.20983 -18.11823 -17.52656 -17.31938 -16.54717 -16.48026 -16.02374 -15.75236 -15.65646 -15.15042 -14.75184 -14.65153 -14.44081 -14.15430 -13.66660 -13.41229 -13.33330 -12.91830 -12.76537 -12.73795 -12.70837 -12.58076 -12.49697 -12.22397 -12.19237 -11.72955 -11.61521 -11.45933 -11.22522 -11.10135 -10.61623 -10.39379 -9.82940 -9.42064 -8.32782 -8.20522 -6.45879 1.07130 1.36008 1.41608 1.55410 1.58862 2.25525 2.48825 2.92827 3.07265 3.74052 3.85909 3.98878 4.07329 4.36797 4.39305 4.40630 4.43169 4.52193 4.59790 4.61908 4.64682 4.69364 4.78202 4.88728 4.92255 4.93497 5.01377 5.02082 5.09683 5.12752 5.16816 5.19924 5.33078 5.37707 5.51628 5.63817 5.73278 5.98010 6.08601 6.24318 6.30225 6.58032 6.84803 6.95831 7.23039 8.35205 8.52042 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.004055 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.491545 B = 6904.035997 C = 7762.819101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.071 3.929 4 C -0.083 4.083 5 H 0.071 0.929 6 C 0.148 3.852 7 N -0.730 5.730 8 C 0.395 3.605 9 C -0.366 4.366 10 C -0.029 4.029 11 C -0.345 4.345 12 C 0.262 3.738 13 C -0.474 4.474 14 H 0.086 0.914 15 C 0.029 3.971 16 N -0.755 5.755 17 Si 0.986 3.014 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.255 1.255 21 N -0.569 5.569 22 C -0.088 4.088 23 C -0.135 4.135 24 C -0.145 4.145 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.391 0.609 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.276 0.724 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.520 -5.050 -2.408 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C -0.006 4.006 4 C -0.102 4.102 5 H 0.090 0.910 6 C 0.024 3.976 7 N -0.365 5.365 8 C 0.154 3.846 9 C -0.392 4.392 10 C -0.053 4.053 11 C -0.368 4.368 12 C 0.135 3.865 13 C -0.506 4.506 14 H 0.104 0.896 15 C -0.193 4.193 16 N -0.377 5.377 17 Si 0.806 3.194 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.179 1.179 21 N -0.292 5.292 22 C -0.107 4.107 23 C -0.192 4.192 24 C -0.202 4.202 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.226 0.774 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.247 -6.135 -2.596 16.638 hybrid contribution 0.553 0.679 0.240 0.908 sum -14.694 -5.455 -2.356 15.850 Atomic orbital electron populations 1.22905 0.80133 1.03592 1.00715 1.87942 1.20751 1.27652 1.95313 1.22459 0.91547 0.85140 1.01445 1.21270 0.94730 0.95408 0.98781 0.91034 1.21141 0.79046 0.96628 1.00820 1.44267 1.04670 1.07262 1.80350 1.18946 0.89372 0.86885 0.89353 1.20954 0.99258 0.92823 1.26177 1.21010 0.93031 0.97790 0.93506 1.21693 0.95673 0.97706 1.21777 1.18653 0.93779 0.87043 0.87066 1.19920 0.91214 0.97828 1.41680 0.89620 1.26933 1.04852 0.94966 0.92562 1.70202 1.38366 1.02678 1.26440 0.85157 0.76129 0.79331 0.78786 1.19082 1.19257 1.17897 1.68117 1.01909 1.32741 1.26422 1.21017 0.99151 0.96320 0.94183 1.21831 1.02696 0.94223 1.00419 1.21902 1.01438 0.99354 0.97471 0.93558 0.93165 0.88734 0.92459 0.91250 0.92230 0.92445 0.77416 0.86277 0.85262 0.88031 0.91319 0.93348 0.93601 0.90174 0.93854 0.90947 0.93681 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -7.91 7.54 -148.98 -1.12 -9.03 16 3 C 0.07 1.40 4.97 71.98 0.36 1.75 16 4 C -0.08 -2.07 2.06 -10.79 -0.02 -2.10 16 5 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 6 C 0.15 4.45 4.17 86.38 0.36 4.81 16 7 N -0.73 -29.59 5.43 -344.98 -1.87 -31.46 16 8 C 0.40 19.69 7.65 133.42 1.02 20.71 16 9 C -0.37 -16.68 9.33 22.73 0.21 -16.47 16 10 C -0.03 -1.34 10.15 22.39 0.23 -1.11 16 11 C -0.35 -18.01 9.83 22.87 0.22 -17.79 16 12 C 0.26 15.26 6.53 40.18 0.26 15.52 16 13 C -0.47 -26.92 9.13 23.46 0.21 -26.71 16 14 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 15 C 0.03 1.51 5.48 85.29 0.47 1.98 16 16 N -0.75 -41.82 11.54 21.84 0.25 -41.56 16 17 Si 0.99 39.52 29.56 68.60 2.03 41.55 16 18 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 21 N -0.57 -32.81 7.97 -186.58 -1.49 -34.30 16 22 C -0.09 -2.25 2.61 -10.80 -0.03 -2.28 16 23 C -0.13 -3.12 8.28 71.98 0.60 -2.53 16 24 C -0.14 -3.32 8.48 71.98 0.61 -2.70 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.20 5.89 -2.39 -0.01 1.19 16 30 H 0.06 1.74 6.52 -2.38 -0.02 1.72 16 31 H 0.06 1.69 7.69 -2.38 -0.02 1.67 16 32 H 0.39 16.42 7.48 -92.71 -0.69 15.73 16 33 H 0.12 4.61 6.68 -2.91 -0.02 4.59 16 34 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 35 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 36 H 0.28 13.86 8.30 -92.70 -0.77 13.09 16 37 H 0.05 1.50 6.80 -2.39 -0.02 1.48 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.73 5.95 -2.39 -0.01 1.72 16 40 H 0.04 1.05 8.09 -2.38 -0.02 1.04 16 41 H 0.07 1.38 5.97 -2.38 -0.01 1.36 16 42 H 0.04 1.15 6.73 -2.39 -0.02 1.13 16 43 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.05 340.06 3.85 -62.20 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: 0.31 Total: 37.96 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 5.75 Total: -25.35 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.11 Total: -107.32 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -1.12 Total: -9.03 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -66.05 3.85 -62.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262375683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.818 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds