Wall clock time and date at job start Tue Mar 31 2020 00:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.47203 * 109.47240 * 240.00111 * 2 1 3 6 6 C 2.64601 * 109.47146 * 239.99942 * 2 1 3 7 7 C 4.07807 * 109.47138 * 240.00033 * 2 1 3 8 8 O 1.21610 * 120.00136 * 78.01291 * 7 6 5 9 9 N 1.34775 * 119.99457 * 258.00723 * 7 6 5 10 10 C 1.46510 * 119.99509 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.46881 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.85635 * 45.33181 * 11 10 9 13 13 C 1.53788 * 113.61461 * 176.53090 * 11 10 9 14 14 C 1.53781 * 87.08345 * 139.97657 * 13 11 10 15 15 H 1.09000 * 113.61471 * 220.01835 * 14 13 11 16 16 N 1.46502 * 113.61324 * 89.19938 * 14 13 11 17 17 C 1.36929 * 119.99828 * 155.00051 * 16 14 13 18 18 H 1.08000 * 120.00630 * 359.97438 * 17 16 14 19 19 C 1.38817 * 120.00178 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00362 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99696 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47507 * 89.99847 * 21 19 17 23 23 H 1.48502 * 109.46749 * 210.00097 * 21 19 17 24 24 H 1.48506 * 109.47054 * 329.99599 * 21 19 17 25 25 C 1.53784 * 113.61345 * 274.13308 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 0.96999 * 120.00623 * 0.02562 * 9 7 6 36 36 H 1.08998 * 109.46894 * 299.99967 * 10 9 7 37 37 H 1.08995 * 109.47355 * 59.99845 * 10 9 7 38 38 H 1.09001 * 113.61102 * 254.53091 * 13 11 10 39 39 H 1.09005 * 113.60981 * 25.42509 * 13 11 10 40 40 H 0.96998 * 119.99907 * 335.00034 * 16 14 13 41 41 H 0.96997 * 120.00217 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.61180 * 334.57189 * 25 11 10 43 43 H 1.09004 * 113.61431 * 105.47269 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0207 -0.6939 -1.2019 6 6 2.4120 -1.2474 -2.1604 7 6 2.8893 -1.9224 -3.3297 8 8 2.4278 -1.6485 -4.4210 9 7 3.8502 -2.8611 -3.2207 10 6 4.3390 -3.5514 -4.4170 11 6 5.4183 -4.5599 -4.0187 12 1 5.1425 -5.1529 -3.1468 13 6 5.9401 -5.4010 -5.1957 14 6 7.3420 -5.2458 -4.5829 15 1 8.1259 -5.0811 -5.3222 16 7 7.6806 -6.2958 -3.6190 17 6 8.9920 -6.6091 -3.3804 18 1 9.7768 -6.0825 -3.9031 19 6 9.3130 -7.6036 -2.4667 20 7 10.5735 -7.9051 -2.2377 21 14 7.9557 -8.5151 -1.5632 22 1 7.5549 -9.7105 -2.3477 23 1 8.4489 -8.9411 -0.2288 24 1 6.7842 -7.6180 -1.3947 25 6 6.8275 -3.9507 -3.9286 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 4.2182 -3.0798 -2.3503 36 1 3.5125 -4.0750 -4.8975 37 1 4.7598 -2.8231 -5.1103 38 1 5.5742 -6.4277 -5.1946 39 1 5.8302 -4.9124 -6.1639 40 1 6.9758 -6.7691 -3.1499 41 1 10.7978 -8.5998 -1.5990 42 1 6.9607 -3.0649 -4.5498 43 1 7.1771 -3.8083 -2.9060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263861590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:50 Heat of formation + Delta-G solvation = 30.581844 kcal Electronic energy + Delta-G solvation = -20535.784610 eV Core-core repulsion = 17389.899580 eV Total energy + Delta-G solvation = -3145.885030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.88900 -38.64819 -37.89531 -34.82148 -33.31781 -32.46310 -30.69021 -27.91012 -27.76871 -27.75506 -25.22019 -24.28849 -23.11250 -21.76000 -21.07588 -19.09709 -18.16498 -17.67329 -16.36018 -16.19516 -15.57122 -15.07202 -14.73178 -14.71899 -14.50408 -14.32532 -13.64648 -13.59958 -12.92646 -12.90521 -12.81029 -12.55199 -12.21159 -12.16190 -12.09158 -11.76217 -11.72484 -11.61116 -11.40552 -10.95968 -10.79704 -10.55791 -10.53109 -10.37654 -10.23713 -10.04683 -9.70922 -9.58252 -9.16698 -8.94719 -7.34069 -5.83056 -3.19402 1.39809 2.08267 2.93760 3.31486 3.34713 3.37308 3.40480 3.89344 4.44602 4.46523 4.52701 4.54091 4.84315 4.89418 4.98910 5.09793 5.14591 5.15485 5.28830 5.35824 5.38357 5.38608 5.39136 5.46106 5.56076 5.63250 5.71867 5.79655 5.80549 5.81111 5.87169 6.09114 6.19024 6.22900 6.44640 6.58756 6.69197 6.85682 6.99742 7.31486 7.94768 7.98590 8.36631 9.14282 9.86465 10.05635 11.35051 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.003099 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.929617 B = 9033.499223 C = 9975.580356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.221 4.221 7 C 0.630 3.370 8 O -0.530 6.530 9 N -0.711 5.711 10 C 0.131 3.869 11 C -0.125 4.125 12 H 0.090 0.910 13 C -0.148 4.148 14 C 0.173 3.827 15 H 0.072 0.928 16 N -0.730 5.730 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.168 4.168 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.073 0.927 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.350 15.695 4.629 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.036 3.964 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.073 4.073 6 C -0.224 4.224 7 C 0.417 3.583 8 O -0.408 6.408 9 N -0.361 5.361 10 C 0.008 3.992 11 C -0.143 4.143 12 H 0.109 0.891 13 C -0.187 4.187 14 C 0.061 3.939 15 H 0.090 0.910 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.579 5.579 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.208 4.208 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.240 0.760 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.366 15.813 3.822 25.292 hybrid contribution -0.741 -0.839 1.188 1.632 sum -20.107 14.974 5.010 25.566 Atomic orbital electron populations 1.21911 0.92263 1.02897 1.02852 1.17956 0.96036 0.94481 0.87929 1.21906 1.01885 0.93272 1.02858 1.21921 1.01955 1.00663 0.95454 1.22524 0.95535 0.94981 0.94303 1.20772 1.03580 1.02440 0.95594 1.14707 0.79487 0.79073 0.85057 1.90847 1.58152 1.64909 1.26856 1.45928 1.38967 1.39152 1.12092 1.21566 0.96791 0.94431 0.86396 1.22775 0.94181 0.97229 1.00162 0.89134 1.23461 0.98843 0.99536 0.96883 1.21036 0.93479 0.88024 0.91358 0.90982 1.42518 1.05149 1.41356 1.47978 1.19113 0.82738 1.15881 1.19954 0.89005 1.24686 0.95782 0.99052 0.99528 1.69695 1.15463 1.34331 1.38407 0.86560 0.81958 0.80245 0.79778 1.20986 1.21657 1.20428 1.23902 0.94868 0.99686 1.02386 0.91872 0.91095 0.91926 0.91071 0.91812 0.91882 0.91870 0.91731 0.91091 0.75964 0.91342 0.90941 0.91337 0.89875 0.80523 0.92960 0.90852 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.43 37.16 0.31 -0.56 16 2 C 0.04 0.26 0.95 -157.30 -0.15 0.11 16 3 C -0.14 -0.88 8.43 37.15 0.31 -0.56 16 4 C -0.14 -0.88 8.43 37.16 0.31 -0.57 16 5 C -0.07 -0.75 11.77 -37.12 -0.44 -1.19 16 6 C -0.22 -2.81 13.61 -38.83 -0.53 -3.34 16 7 C 0.63 8.99 7.65 -14.33 -0.11 8.88 16 8 O -0.53 -9.29 17.08 5.27 0.09 -9.20 16 9 N -0.71 -8.77 5.55 -62.76 -0.35 -9.12 16 10 C 0.13 1.65 5.50 -4.04 -0.02 1.62 16 11 C -0.12 -1.70 3.63 -89.80 -0.33 -2.03 16 12 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.15 -2.14 7.39 -25.91 -0.19 -2.33 16 14 C 0.17 3.15 4.57 -67.03 -0.31 2.84 16 15 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 16 N -0.73 -16.64 5.11 -52.55 -0.27 -16.91 16 17 C -0.25 -6.81 10.45 -15.06 -0.16 -6.97 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 21 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 25 C -0.17 -2.60 7.44 -25.83 -0.19 -2.79 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.41 4.35 8.44 -40.82 -0.34 4.01 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.36 8.08 5.76 -40.82 -0.24 7.85 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.07 1.02 7.92 -51.92 -0.41 0.61 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -32.71 362.34 -7.91 -40.62 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.33 Total: 7.14 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.58 Total: -6.81 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.16 Total: -54.10 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.71 -7.91 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263861590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.204 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds