Wall clock time and date at job start Tue Mar 31 2020 00:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.47203 * 109.47240 * 240.00111 * 2 1 3 6 6 C 2.64601 * 109.47146 * 239.99942 * 2 1 3 7 7 C 4.07807 * 109.47138 * 240.00033 * 2 1 3 8 8 O 1.21610 * 120.00136 * 78.01291 * 7 6 5 9 9 N 1.34775 * 119.99457 * 258.00723 * 7 6 5 10 10 C 1.46510 * 119.99509 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.46881 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.85635 * 45.33181 * 11 10 9 13 13 C 1.53788 * 113.61461 * 176.53090 * 11 10 9 14 14 C 1.53781 * 87.08345 * 139.97657 * 13 11 10 15 15 H 1.09000 * 113.61471 * 220.01835 * 14 13 11 16 16 N 1.46502 * 113.61324 * 89.19938 * 14 13 11 17 17 C 1.36929 * 119.99828 * 155.00051 * 16 14 13 18 18 H 1.08000 * 120.00630 * 359.97438 * 17 16 14 19 19 C 1.38817 * 120.00178 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00362 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99696 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47507 * 89.99847 * 21 19 17 23 23 H 1.48502 * 109.46749 * 210.00097 * 21 19 17 24 24 H 1.48506 * 109.47054 * 329.99599 * 21 19 17 25 25 C 1.53784 * 113.61345 * 274.13308 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 0.96999 * 120.00623 * 0.02562 * 9 7 6 36 36 H 1.08998 * 109.46894 * 299.99967 * 10 9 7 37 37 H 1.08995 * 109.47355 * 59.99845 * 10 9 7 38 38 H 1.09001 * 113.61102 * 254.53091 * 13 11 10 39 39 H 1.09005 * 113.60981 * 25.42509 * 13 11 10 40 40 H 0.96998 * 119.99907 * 335.00034 * 16 14 13 41 41 H 0.96997 * 120.00217 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.61180 * 334.57189 * 25 11 10 43 43 H 1.09004 * 113.61431 * 105.47269 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0207 -0.6939 -1.2019 6 6 2.4120 -1.2474 -2.1604 7 6 2.8893 -1.9224 -3.3297 8 8 2.4278 -1.6485 -4.4210 9 7 3.8502 -2.8611 -3.2207 10 6 4.3390 -3.5514 -4.4170 11 6 5.4183 -4.5599 -4.0187 12 1 5.1425 -5.1529 -3.1468 13 6 5.9401 -5.4010 -5.1957 14 6 7.3420 -5.2458 -4.5829 15 1 8.1259 -5.0811 -5.3222 16 7 7.6806 -6.2958 -3.6190 17 6 8.9920 -6.6091 -3.3804 18 1 9.7768 -6.0825 -3.9031 19 6 9.3130 -7.6036 -2.4667 20 7 10.5735 -7.9051 -2.2377 21 14 7.9557 -8.5151 -1.5632 22 1 7.5549 -9.7105 -2.3477 23 1 8.4489 -8.9411 -0.2288 24 1 6.7842 -7.6180 -1.3947 25 6 6.8275 -3.9507 -3.9286 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 4.2182 -3.0798 -2.3503 36 1 3.5125 -4.0750 -4.8975 37 1 4.7598 -2.8231 -5.1103 38 1 5.5742 -6.4277 -5.1946 39 1 5.8302 -4.9124 -6.1639 40 1 6.9758 -6.7691 -3.1499 41 1 10.7978 -8.5998 -1.5990 42 1 6.9607 -3.0649 -4.5498 43 1 7.1771 -3.8083 -2.9060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263861590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:50 Heat of formation + Delta-G solvation = 9.466860 kcal Electronic energy + Delta-G solvation = -20536.700224 eV Core-core repulsion = 17389.899580 eV Total energy + Delta-G solvation = -3146.800644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02191 -39.94441 -38.49631 -36.16188 -35.04581 -33.40382 -32.59897 -29.15344 -28.22939 -28.21565 -26.47285 -25.76626 -24.56448 -23.03109 -21.90415 -20.40625 -19.61930 -19.30508 -17.44308 -16.95729 -16.66569 -16.60748 -16.10056 -15.68966 -15.28209 -15.25080 -15.06959 -14.86202 -14.63313 -14.14808 -13.41893 -13.37684 -13.32892 -13.12730 -13.03600 -12.77576 -12.71672 -12.63929 -12.33589 -12.28170 -12.19751 -11.91406 -11.81418 -11.62806 -11.39786 -11.34968 -11.26435 -10.99479 -10.85847 -10.22354 -9.30280 -8.03145 -5.36867 0.42733 1.19447 1.36810 1.41201 1.48080 1.98923 2.39324 2.47665 3.07283 3.27157 3.50715 3.71691 3.76653 3.92497 3.93987 3.95552 3.99332 4.25433 4.29760 4.35095 4.67555 4.71988 4.72333 4.73247 4.81616 4.92772 4.94071 4.94248 4.95972 5.04584 5.06529 5.16183 5.18360 5.29868 5.33204 5.34490 5.40915 5.52912 5.80332 6.12890 6.22292 6.30803 6.95038 7.07425 7.84262 8.02801 9.18404 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.003099 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.929617 B = 9033.499223 C = 9975.580356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.029 3.971 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.041 4.041 6 C -0.270 4.270 7 C 0.632 3.368 8 O -0.571 6.571 9 N -0.701 5.701 10 C 0.137 3.863 11 C -0.107 4.107 12 H 0.090 0.910 13 C -0.131 4.131 14 C 0.145 3.855 15 H 0.059 0.941 16 N -0.734 5.734 17 C -0.232 4.232 18 H 0.057 0.943 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.956 3.044 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.249 1.249 25 C -0.157 4.157 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.092 0.908 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.164 16.624 5.793 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.029 3.971 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.044 4.044 6 C -0.272 4.272 7 C 0.420 3.580 8 O -0.452 6.452 9 N -0.351 5.351 10 C 0.014 3.986 11 C -0.126 4.126 12 H 0.108 0.892 13 C -0.170 4.170 14 C 0.036 3.964 15 H 0.077 0.923 16 N -0.376 5.376 17 C -0.363 4.363 18 H 0.075 0.925 19 C -0.257 4.257 20 N -0.635 5.635 21 Si 0.783 3.217 22 H -0.205 1.205 23 H -0.224 1.224 24 H -0.174 1.174 25 C -0.197 4.197 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.200 0.800 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.214 16.775 4.971 28.276 hybrid contribution 0.185 -1.009 0.790 1.295 sum -22.029 15.765 5.761 27.695 Atomic orbital electron populations 1.21935 0.91080 1.02975 1.03831 1.18304 0.96944 0.94942 0.86874 1.21932 1.01606 0.92454 1.03849 1.21940 1.01665 1.00645 0.95602 1.23385 0.93508 0.93277 0.94208 1.20699 1.05734 1.04346 0.96467 1.14852 0.79233 0.78953 0.84971 1.90813 1.59652 1.66334 1.28388 1.45856 1.38294 1.38444 1.12526 1.21480 0.96507 0.94156 0.86439 1.22597 0.93296 0.96863 0.99794 0.89182 1.23358 0.95240 1.00199 0.98211 1.21378 0.95442 0.88460 0.91121 0.92292 1.42443 1.03232 1.42733 1.49151 1.19068 0.84208 1.14585 1.18466 0.92546 1.25529 0.98307 1.00663 1.01203 1.69885 1.18124 1.35616 1.39869 0.85398 0.79539 0.79077 0.77675 1.20512 1.22351 1.17366 1.23766 0.95705 0.98877 1.01376 0.92498 0.88573 0.92327 0.88572 0.92318 0.92464 0.92227 0.92240 0.88753 0.74959 0.90797 0.90779 0.91199 0.87271 0.79963 0.93329 0.88972 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.43 71.98 0.61 -0.77 16 2 C 0.03 0.36 0.95 -53.99 -0.05 0.31 16 3 C -0.14 -1.40 8.43 71.98 0.61 -0.80 16 4 C -0.14 -1.37 8.43 71.98 0.61 -0.76 16 5 C -0.04 -0.83 11.77 31.13 0.37 -0.46 16 6 C -0.27 -6.70 13.61 30.02 0.41 -6.29 16 7 C 0.63 17.67 7.65 85.49 0.65 18.33 16 8 O -0.57 -19.93 17.08 -4.06 -0.07 -20.00 16 9 N -0.70 -16.23 5.55 -470.74 -2.61 -18.84 16 10 C 0.14 3.13 5.50 86.38 0.47 3.60 16 11 C -0.11 -2.64 3.63 -10.27 -0.04 -2.68 16 12 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 13 C -0.13 -3.45 7.39 31.12 0.23 -3.22 16 14 C 0.15 5.15 4.57 45.58 0.21 5.36 16 15 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 16 N -0.73 -32.92 5.11 -320.16 -1.64 -34.55 16 17 C -0.23 -13.04 10.45 84.04 0.88 -12.16 16 18 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 19 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 20 N -0.98 -62.80 13.97 21.65 0.30 -62.50 16 21 Si 0.96 44.53 27.74 68.60 1.90 46.44 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.25 -10.27 6.52 99.48 0.65 -9.63 16 25 C -0.16 -4.60 7.44 31.18 0.23 -4.37 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 35 H 0.41 8.18 8.44 -92.71 -0.78 7.40 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.72 7.88 -2.39 -0.02 1.70 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 2.35 8.10 -2.38 -0.02 2.33 16 40 H 0.37 15.63 5.76 -92.71 -0.53 15.09 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.09 2.37 7.92 -2.38 -0.02 2.35 16 43 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -72.85 362.34 3.16 -69.69 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.38 Total: 27.04 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.65 Total: -7.27 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -3.95 Total: -115.89 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.07 Total: -20.00 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.44 kcal Total: -72.85 3.16 -69.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263861590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.155 kcal (2) G-P(sol) polarization free energy of solvation -72.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds