Wall clock time and date at job start Tue Mar 31 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47127 * 68.49736 * 3 2 1 5 5 C 1.53000 * 109.47353 * 179.97438 * 4 3 2 6 6 C 1.50689 * 109.47583 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99936 * 0.02562 * 6 5 4 8 8 N 1.34785 * 120.00221 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99961 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.64457 * 328.14174 * 9 8 6 11 11 C 1.55163 * 110.72010 * 91.47802 * 9 8 6 12 12 C 1.54690 * 101.67435 * 153.69915 * 11 9 8 13 13 N 1.47422 * 104.94287 * 323.27401 * 12 11 9 14 14 C 1.36938 * 125.65241 * 204.07383 * 13 12 11 15 15 H 1.07999 * 120.00132 * 227.14576 * 14 13 12 16 16 C 1.38807 * 119.99833 * 47.14318 * 14 13 12 17 17 N 1.31620 * 120.00339 * 193.23290 * 16 14 13 18 18 Si 1.86805 * 119.99850 * 13.23038 * 16 14 13 19 19 H 1.48498 * 109.46978 * 267.33833 * 18 16 14 20 20 H 1.48504 * 109.47106 * 147.33924 * 18 16 14 21 21 H 1.48491 * 109.47181 * 27.33912 * 18 16 14 22 22 C 1.47029 * 108.70263 * 23.81508 * 13 12 11 23 23 H 1.09002 * 109.88201 * 239.59250 * 22 13 12 24 24 C 1.53002 * 109.88465 * 118.58078 * 22 13 12 25 25 C 1.53002 * 109.46732 * 72.43839 * 24 22 13 26 26 H 4.44647 * 5.63321 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47022 * 308.49464 * 3 2 1 28 28 H 1.09002 * 109.46852 * 188.49677 * 3 2 1 29 29 H 1.08999 * 109.47392 * 59.99954 * 4 3 2 30 30 H 1.09002 * 109.47206 * 299.99723 * 4 3 2 31 31 H 1.09008 * 109.46974 * 59.99573 * 5 4 3 32 32 H 1.09002 * 109.47128 * 300.00248 * 5 4 3 33 33 H 0.96994 * 119.99855 * 359.97438 * 8 6 5 34 34 H 1.08995 * 111.00226 * 271.93592 * 11 9 8 35 35 H 1.09001 * 111.00252 * 35.75397 * 11 9 8 36 36 H 1.08997 * 110.38671 * 204.36461 * 12 11 9 37 37 H 1.09001 * 110.24195 * 82.11193 * 12 11 9 38 38 H 0.96994 * 120.00172 * 180.02562 * 17 16 14 39 39 H 1.08991 * 109.47005 * 192.43683 * 24 22 13 40 40 H 1.09000 * 109.47305 * 312.44148 * 24 22 13 41 41 H 1.08992 * 109.47607 * 38.59458 * 25 24 22 42 42 H 1.09004 * 109.46545 * 158.59442 * 25 24 22 43 43 H 1.08998 * 109.47116 * 278.58903 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.5278 -1.3421 5 6 4.6862 -0.5266 -1.3423 6 6 5.1888 -1.0477 -2.6639 7 8 4.4009 -1.3863 -3.5215 8 7 6.5140 -1.1375 -2.8930 9 6 7.0026 -1.6436 -4.1781 10 1 6.3141 -2.3834 -4.5865 11 6 7.2204 -0.4788 -5.1798 12 6 8.3091 -1.0650 -6.1094 13 7 9.1840 -1.8517 -5.2213 14 6 10.4947 -2.1647 -5.4649 15 1 10.8432 -3.1773 -5.3247 16 6 11.3754 -1.1805 -5.8920 17 7 12.5537 -1.5156 -6.3735 18 14 10.8883 0.6197 -5.7836 19 1 10.2713 1.0436 -7.0661 20 1 12.0949 1.4439 -5.5185 21 1 9.9117 0.8026 -4.6801 22 6 8.4181 -2.2395 -4.0276 23 1 8.8977 -1.8406 -3.1337 24 6 8.3337 -3.7644 -3.9361 25 6 9.6983 -4.3274 -3.5339 26 1 -1.0499 -0.0002 -0.0001 27 1 3.0096 -0.6388 0.8043 28 1 3.0088 1.0172 0.1518 29 1 2.7926 0.1117 -2.1464 30 1 2.7934 -1.5444 -1.4939 31 1 5.0502 -1.1658 -0.5379 32 1 5.0488 0.4901 -1.1907 33 1 7.1442 -0.8663 -2.2073 34 1 6.3064 -0.2633 -5.7331 35 1 7.5851 0.4125 -4.6692 36 1 8.8738 -0.2634 -6.5853 37 1 7.8551 -1.7091 -6.8625 38 1 13.1692 -0.8278 -6.6716 39 1 7.5911 -4.0429 -3.1886 40 1 8.0442 -4.1711 -4.9051 41 1 10.1595 -3.6705 -2.7966 42 1 9.5692 -5.3211 -3.1049 43 1 10.3384 -4.3919 -4.4138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264050283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:53 Heat of formation + Delta-G solvation = 21.411670 kcal Electronic energy + Delta-G solvation = -21745.190931 eV Core-core repulsion = 18598.908252 eV Total energy + Delta-G solvation = -3146.282678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.88511 -38.05719 -35.79388 -34.10932 -32.59363 -32.56706 -32.04401 -29.55277 -28.12390 -26.90667 -24.35108 -22.69346 -21.98204 -20.68606 -20.29290 -19.42373 -18.41168 -16.95214 -16.82450 -16.40184 -16.07828 -15.10394 -14.53542 -14.40781 -14.26289 -14.00946 -13.68201 -12.98741 -12.86629 -12.69124 -12.53056 -12.39460 -12.21737 -11.89482 -11.73360 -11.46847 -11.23109 -11.18433 -10.93510 -10.81404 -10.48243 -10.45748 -10.33887 -10.27627 -10.04442 -9.93218 -9.68832 -9.42758 -8.76116 -8.53575 -6.63005 -6.01161 -3.60173 2.55381 2.60143 2.72893 3.29653 3.29747 3.41556 3.47255 4.11725 4.48453 4.62735 4.76894 4.84867 4.98699 5.13590 5.20835 5.24027 5.27194 5.36625 5.39439 5.43060 5.59560 5.78661 5.82692 5.89070 5.90219 5.96150 6.06666 6.08161 6.20593 6.35981 6.43295 6.52211 6.57774 6.65760 6.76966 6.85109 7.05479 7.08037 7.38075 7.65267 8.01224 8.33698 8.41058 8.85061 9.61931 10.25712 11.11320 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.003676 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.693589 B = 7616.029025 C = 8125.133594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.511 3.489 7 O -0.545 6.545 8 N -0.718 5.718 9 C 0.134 3.866 10 H 0.097 0.903 11 C -0.146 4.146 12 C 0.119 3.881 13 N -0.598 5.598 14 C -0.252 4.252 15 H 0.090 0.910 16 C 0.040 3.960 17 N -0.903 5.903 18 Si 0.888 3.112 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.267 1.267 22 C 0.153 3.847 23 H 0.044 0.956 24 C -0.123 4.123 25 C -0.144 4.144 26 H 0.216 0.784 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.031 0.969 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.147 2.766 12.707 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.184 4.184 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.182 4.182 6 C 0.297 3.703 7 O -0.422 6.422 8 N -0.368 5.368 9 C 0.029 3.971 10 H 0.115 0.885 11 C -0.186 4.186 12 C -0.006 4.006 13 N -0.325 5.325 14 C -0.380 4.380 15 H 0.107 0.893 16 C -0.161 4.161 17 N -0.544 5.544 18 Si 0.719 3.281 19 H -0.213 1.213 20 H -0.230 1.230 21 H -0.192 1.192 22 C 0.046 3.954 23 H 0.062 0.938 24 C -0.163 4.163 25 C -0.201 4.201 26 H 0.233 0.767 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.431 2.544 11.993 20.501 hybrid contribution 0.044 1.294 0.289 1.326 sum -16.387 3.838 12.282 20.835 Atomic orbital electron populations 1.24908 0.96010 1.01325 1.00908 1.23134 0.94612 1.00244 1.00371 1.18787 0.84825 1.02674 0.98831 1.21267 0.93095 1.03131 0.96172 1.21685 0.97266 1.03278 0.95970 1.20614 0.82357 0.78009 0.89314 1.90698 1.55302 1.49166 1.47024 1.46087 1.06880 1.65880 1.17951 1.22090 0.96276 0.96005 0.82750 0.88508 1.23151 0.99224 0.98017 0.98176 1.21847 0.90935 0.94613 0.93201 1.44505 1.08556 1.63938 1.15508 1.18712 0.81250 0.94835 1.43220 0.89266 1.25753 0.94636 0.98171 0.97558 1.69779 1.08484 1.33485 1.42619 0.86677 0.76862 0.86191 0.78400 1.21327 1.23001 1.19228 1.21333 0.88872 0.92958 0.92194 0.93815 1.21898 0.97059 0.96972 1.00348 1.21849 0.97640 0.98240 1.02358 0.76737 0.89442 0.89473 0.90754 0.90710 0.88659 0.88727 0.76597 0.91316 0.91478 0.93699 0.94950 0.92567 0.93754 0.92204 0.93175 0.94978 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.89 19.25 29.55 0.57 -1.32 16 2 C -0.18 -1.77 13.34 -37.12 -0.50 -2.27 16 3 C -0.01 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.10 -0.92 4.46 -26.73 -0.12 -1.04 16 5 C -0.14 -1.20 5.70 -27.89 -0.16 -1.36 16 6 C 0.51 6.73 7.83 -10.99 -0.09 6.65 16 7 O -0.54 -9.37 15.63 5.56 0.09 -9.28 16 8 N -0.72 -9.59 5.18 -52.03 -0.27 -9.86 16 9 C 0.13 2.24 2.84 -66.09 -0.19 2.05 16 10 H 0.10 1.72 7.25 -51.93 -0.38 1.35 16 11 C -0.15 -2.63 6.76 -24.70 -0.17 -2.80 16 12 C 0.12 2.52 6.24 -2.65 -0.02 2.51 16 13 N -0.60 -13.67 2.47 -162.71 -0.40 -14.07 16 14 C -0.25 -6.74 9.55 -15.06 -0.14 -6.88 16 15 H 0.09 2.52 5.25 -52.49 -0.28 2.25 16 16 C 0.04 1.13 5.48 -17.43 -0.10 1.04 16 17 N -0.90 -26.90 13.97 55.49 0.78 -26.13 16 18 Si 0.89 21.93 25.13 -169.99 -4.27 17.66 16 19 H -0.29 -7.01 6.82 56.52 0.39 -6.62 16 20 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 21 H -0.27 -6.35 6.95 56.52 0.39 -5.96 16 22 C 0.15 2.88 2.93 -66.95 -0.20 2.68 16 23 H 0.04 0.83 7.47 -51.93 -0.39 0.44 16 24 C -0.12 -2.17 5.40 -26.73 -0.14 -2.31 16 25 C -0.14 -2.59 9.11 37.16 0.34 -2.25 16 26 H 0.22 1.17 7.80 -54.09 -0.42 0.75 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.40 4.41 8.37 -40.82 -0.34 4.07 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 36 H 0.05 1.03 4.21 -51.93 -0.22 0.81 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.91 7.79 -51.93 -0.40 0.50 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.55 5.53 -51.93 -0.29 1.26 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -32.17 347.27 -6.85 -39.03 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.93 Total: 3.00 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.07 Total: -5.59 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.10 Total: -50.06 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.27 Total: 17.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.17 -6.85 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264050283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.438 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds