Wall clock time and date at job start Tue Mar 31 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47127 * 68.49736 * 3 2 1 5 5 C 1.53000 * 109.47353 * 179.97438 * 4 3 2 6 6 C 1.50689 * 109.47583 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99936 * 0.02562 * 6 5 4 8 8 N 1.34785 * 120.00221 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99961 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.64457 * 328.14174 * 9 8 6 11 11 C 1.55163 * 110.72010 * 91.47802 * 9 8 6 12 12 C 1.54690 * 101.67435 * 153.69915 * 11 9 8 13 13 N 1.47422 * 104.94287 * 323.27401 * 12 11 9 14 14 C 1.36938 * 125.65241 * 204.07383 * 13 12 11 15 15 H 1.07999 * 120.00132 * 227.14576 * 14 13 12 16 16 C 1.38807 * 119.99833 * 47.14318 * 14 13 12 17 17 N 1.31620 * 120.00339 * 193.23290 * 16 14 13 18 18 Si 1.86805 * 119.99850 * 13.23038 * 16 14 13 19 19 H 1.48498 * 109.46978 * 267.33833 * 18 16 14 20 20 H 1.48504 * 109.47106 * 147.33924 * 18 16 14 21 21 H 1.48491 * 109.47181 * 27.33912 * 18 16 14 22 22 C 1.47029 * 108.70263 * 23.81508 * 13 12 11 23 23 H 1.09002 * 109.88201 * 239.59250 * 22 13 12 24 24 C 1.53002 * 109.88465 * 118.58078 * 22 13 12 25 25 C 1.53002 * 109.46732 * 72.43839 * 24 22 13 26 26 H 4.44647 * 5.63321 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47022 * 308.49464 * 3 2 1 28 28 H 1.09002 * 109.46852 * 188.49677 * 3 2 1 29 29 H 1.08999 * 109.47392 * 59.99954 * 4 3 2 30 30 H 1.09002 * 109.47206 * 299.99723 * 4 3 2 31 31 H 1.09008 * 109.46974 * 59.99573 * 5 4 3 32 32 H 1.09002 * 109.47128 * 300.00248 * 5 4 3 33 33 H 0.96994 * 119.99855 * 359.97438 * 8 6 5 34 34 H 1.08995 * 111.00226 * 271.93592 * 11 9 8 35 35 H 1.09001 * 111.00252 * 35.75397 * 11 9 8 36 36 H 1.08997 * 110.38671 * 204.36461 * 12 11 9 37 37 H 1.09001 * 110.24195 * 82.11193 * 12 11 9 38 38 H 0.96994 * 120.00172 * 180.02562 * 17 16 14 39 39 H 1.08991 * 109.47005 * 192.43683 * 24 22 13 40 40 H 1.09000 * 109.47305 * 312.44148 * 24 22 13 41 41 H 1.08992 * 109.47607 * 38.59458 * 25 24 22 42 42 H 1.09004 * 109.46545 * 158.59442 * 25 24 22 43 43 H 1.08998 * 109.47116 * 278.58903 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.5278 -1.3421 5 6 4.6862 -0.5266 -1.3423 6 6 5.1888 -1.0477 -2.6639 7 8 4.4009 -1.3863 -3.5215 8 7 6.5140 -1.1375 -2.8930 9 6 7.0026 -1.6436 -4.1781 10 1 6.3141 -2.3834 -4.5865 11 6 7.2204 -0.4788 -5.1798 12 6 8.3091 -1.0650 -6.1094 13 7 9.1840 -1.8517 -5.2213 14 6 10.4947 -2.1647 -5.4649 15 1 10.8432 -3.1773 -5.3247 16 6 11.3754 -1.1805 -5.8920 17 7 12.5537 -1.5156 -6.3735 18 14 10.8883 0.6197 -5.7836 19 1 10.2713 1.0436 -7.0661 20 1 12.0949 1.4439 -5.5185 21 1 9.9117 0.8026 -4.6801 22 6 8.4181 -2.2395 -4.0276 23 1 8.8977 -1.8406 -3.1337 24 6 8.3337 -3.7644 -3.9361 25 6 9.6983 -4.3274 -3.5339 26 1 -1.0499 -0.0002 -0.0001 27 1 3.0096 -0.6388 0.8043 28 1 3.0088 1.0172 0.1518 29 1 2.7926 0.1117 -2.1464 30 1 2.7934 -1.5444 -1.4939 31 1 5.0502 -1.1658 -0.5379 32 1 5.0488 0.4901 -1.1907 33 1 7.1442 -0.8663 -2.2073 34 1 6.3064 -0.2633 -5.7331 35 1 7.5851 0.4125 -4.6692 36 1 8.8738 -0.2634 -6.5853 37 1 7.8551 -1.7091 -6.8625 38 1 13.1692 -0.8278 -6.6716 39 1 7.5911 -4.0429 -3.1886 40 1 8.0442 -4.1711 -4.9051 41 1 10.1595 -3.6705 -2.7966 42 1 9.5692 -5.3211 -3.1049 43 1 10.3384 -4.3919 -4.4138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264050283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:53 Heat of formation + Delta-G solvation = 0.879086 kcal Electronic energy + Delta-G solvation = -21746.081290 eV Core-core repulsion = 18598.908252 eV Total energy + Delta-G solvation = -3147.173038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.06899 -39.49110 -36.49531 -35.52196 -34.23851 -33.92230 -33.15912 -31.16027 -29.13970 -28.22642 -26.06165 -23.81836 -23.41773 -21.96769 -21.58122 -20.81495 -19.08490 -18.87125 -17.99682 -17.75640 -16.85666 -16.54307 -16.05434 -15.68597 -15.39797 -15.23346 -14.59340 -14.44662 -14.37657 -14.13243 -13.77848 -13.76533 -13.43351 -13.26207 -13.15072 -12.97353 -12.66924 -12.44198 -12.32586 -12.19128 -11.88719 -11.84793 -11.73086 -11.50342 -11.25323 -11.14151 -10.93992 -10.79008 -10.64478 -9.97194 -8.54205 -8.13115 -5.71363 1.32930 1.39424 1.52007 1.72673 1.86899 1.95172 2.25393 2.44035 3.08786 3.35622 3.56045 3.72911 3.83314 3.86311 4.12853 4.14670 4.21892 4.29546 4.43646 4.47097 4.57682 4.61466 4.71388 4.73197 4.78993 4.85356 4.85673 4.92553 5.04830 5.10683 5.20831 5.22512 5.24503 5.24783 5.36598 5.43106 5.54485 5.65667 5.98715 6.38207 6.64709 6.74779 6.88176 7.34354 7.54207 8.25917 9.01398 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.003676 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.693589 B = 7616.029025 C = 8125.133594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.094 4.094 5 C -0.130 4.130 6 C 0.509 3.491 7 O -0.589 6.589 8 N -0.710 5.710 9 C 0.148 3.852 10 H 0.088 0.912 11 C -0.136 4.136 12 C 0.111 3.889 13 N -0.613 5.613 14 C -0.237 4.237 15 H 0.065 0.935 16 C -0.017 4.017 17 N -0.952 5.952 18 Si 0.946 3.054 19 H -0.286 1.286 20 H -0.309 1.309 21 H -0.248 1.248 22 C 0.152 3.848 23 H 0.050 0.950 24 C -0.118 4.118 25 C -0.138 4.138 26 H 0.238 0.762 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.415 0.585 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 3.843 15.252 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.132 4.132 5 C -0.170 4.170 6 C 0.298 3.702 7 O -0.469 6.469 8 N -0.361 5.361 9 C 0.042 3.958 10 H 0.106 0.894 11 C -0.175 4.175 12 C -0.013 4.013 13 N -0.340 5.340 14 C -0.366 4.366 15 H 0.082 0.918 16 C -0.214 4.214 17 N -0.596 5.596 18 Si 0.775 3.225 19 H -0.213 1.213 20 H -0.238 1.238 21 H -0.172 1.172 22 C 0.046 3.954 23 H 0.068 0.932 24 C -0.157 4.157 25 C -0.195 4.195 26 H 0.255 0.745 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.393 3.626 14.585 23.753 hybrid contribution 0.551 0.832 -0.519 1.125 sum -17.841 4.458 14.067 23.153 Atomic orbital electron populations 1.25704 0.97117 1.00903 1.00286 1.23868 0.95891 1.00794 1.01007 1.18857 0.83686 1.04068 0.98094 1.21167 0.93837 1.01531 0.96659 1.21718 0.96257 1.05288 0.93708 1.21453 0.81553 0.76800 0.90432 1.90692 1.56280 1.51022 1.48879 1.45954 1.07540 1.65678 1.16949 1.21701 0.94650 0.95212 0.84232 0.89418 1.23060 0.98346 0.98256 0.97834 1.21922 0.91481 0.94090 0.93828 1.44588 1.07761 1.64083 1.17590 1.18662 0.82880 0.93869 1.41180 0.91799 1.26363 0.94750 1.02046 0.98211 1.69909 1.10033 1.34477 1.45131 0.85744 0.76444 0.81475 0.78849 1.21289 1.23783 1.17207 1.21445 0.89592 0.93805 0.90543 0.93188 1.21832 0.97419 0.95983 1.00466 1.21753 0.97176 0.99847 1.00718 0.74500 0.87474 0.87639 0.92942 0.92738 0.85499 0.85843 0.74828 0.90111 0.91057 0.95274 0.95031 0.92845 0.90809 0.93692 0.93448 0.92342 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.60 19.25 74.32 1.43 -2.17 16 2 C -0.22 -3.78 13.34 31.12 0.42 -3.36 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.04 16 4 C -0.09 -1.52 4.46 30.59 0.14 -1.39 16 5 C -0.13 -1.67 5.70 29.84 0.17 -1.50 16 6 C 0.51 11.83 7.83 87.65 0.69 12.52 16 7 O -0.59 -19.25 15.63 -3.04 -0.05 -19.30 16 8 N -0.71 -16.44 5.18 -436.92 -2.26 -18.70 16 9 C 0.15 4.59 2.84 46.18 0.13 4.72 16 10 H 0.09 2.95 7.25 -2.39 -0.02 2.93 16 11 C -0.14 -4.55 6.76 31.91 0.22 -4.34 16 12 C 0.11 4.62 6.24 86.78 0.54 5.16 16 13 N -0.61 -27.66 2.47 -668.69 -1.65 -29.31 16 14 C -0.24 -12.86 9.55 84.03 0.80 -12.05 16 15 H 0.06 3.77 5.25 -2.91 -0.02 3.76 16 16 C -0.02 -0.96 5.48 84.86 0.46 -0.50 16 17 N -0.95 -58.47 13.97 21.65 0.30 -58.17 16 18 Si 0.95 45.46 25.13 68.60 1.72 47.18 16 19 H -0.29 -13.57 6.82 99.48 0.68 -12.89 16 20 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 21 H -0.25 -10.99 6.95 99.48 0.69 -10.29 16 22 C 0.15 5.43 2.93 45.34 0.13 5.56 16 23 H 0.05 1.76 7.47 -2.39 -0.02 1.74 16 24 C -0.12 -3.95 5.40 30.60 0.17 -3.78 16 25 C -0.14 -4.84 9.11 71.98 0.66 -4.19 16 26 H 0.24 2.17 7.80 -4.42 -0.03 2.14 16 27 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 7.31 8.37 -92.71 -0.78 6.53 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.07 2.35 7.99 -2.39 -0.02 2.33 16 36 H 0.03 1.30 4.21 -2.39 -0.01 1.29 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.66 7.79 -2.39 -0.02 1.64 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.04 1.63 5.53 -2.39 -0.01 1.61 16 Total: -1.00 -72.09 347.27 4.35 -67.74 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.17 Total: 15.85 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 6.11 Total: -5.28 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -3.61 Total: -106.19 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.72 Total: 47.18 kcal Total: -72.09 4.35 -67.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264050283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.617 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds