Wall clock time and date at job start Tue Mar 31 2020 00:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 C 1.52996 * 109.46891 * 239.99863 * 2 1 3 5 5 C 1.47199 * 109.46792 * 120.00355 * 2 1 3 6 6 C 2.64597 * 109.46886 * 120.00255 * 2 1 3 7 7 C 4.07804 * 109.46956 * 120.00185 * 2 1 3 8 8 O 1.21606 * 119.99817 * 139.57026 * 7 6 5 9 9 N 1.34771 * 119.99750 * 319.57223 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09003 * 112.84890 * 316.19493 * 11 10 9 13 13 C 1.53787 * 113.61418 * 87.49925 * 11 10 9 14 14 C 1.53789 * 87.07916 * 139.98375 * 13 11 10 15 15 H 1.09004 * 113.68906 * 89.12857 * 14 13 11 16 16 N 1.46494 * 113.61168 * 220.02104 * 14 13 11 17 17 C 1.36939 * 119.99992 * 252.49759 * 16 14 13 18 18 H 1.07998 * 119.99891 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00237 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99727 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00155 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47202 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46919 * 120.00133 * 21 19 17 24 24 H 1.48492 * 109.47586 * 240.00322 * 21 19 17 25 25 C 1.53780 * 113.61900 * 184.99939 * 11 10 9 26 26 H 1.09002 * 109.46838 * 300.00410 * 1 2 3 27 27 H 1.09004 * 109.47006 * 59.99907 * 1 2 3 28 28 H 1.08992 * 109.47513 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47407 * 299.99659 * 3 2 1 31 31 H 1.09002 * 109.47070 * 60.00059 * 3 2 1 32 32 H 1.09001 * 109.47372 * 300.00036 * 4 2 1 33 33 H 1.09004 * 109.47108 * 60.00292 * 4 2 1 34 34 H 1.09004 * 109.47368 * 180.02562 * 4 2 1 35 35 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 37 37 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 38 38 H 1.08998 * 113.61477 * 254.53206 * 13 11 10 39 39 H 1.08992 * 113.61461 * 25.43734 * 13 11 10 40 40 H 0.97000 * 120.00215 * 72.49761 * 16 14 13 41 41 H 0.96994 * 120.00007 * 179.97438 * 20 19 17 42 42 H 1.09004 * 113.61169 * 334.56803 * 25 11 10 43 43 H 1.09003 * 113.61760 * 105.46589 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6940 1.2019 6 6 2.4119 -1.2474 2.1604 7 6 2.8893 -1.9225 3.3297 8 8 4.0684 -2.2016 3.4318 9 7 2.0316 -2.2485 4.3168 10 6 2.5201 -2.9387 5.5133 11 6 1.3527 -3.1890 6.4700 12 1 0.6965 -2.3246 6.5723 13 6 0.6039 -4.5043 6.1974 14 6 0.5207 -4.6814 7.7228 15 1 -0.3638 -4.2265 8.1689 16 7 0.7358 -6.0610 8.1660 17 6 -0.3176 -6.8038 8.6282 18 1 -1.3070 -6.3725 8.6664 19 6 -0.1137 -8.1110 9.0487 20 7 1.0923 -8.6362 9.0035 21 14 -1.5506 -9.1240 9.6799 22 1 -2.7908 -8.3088 9.6300 23 1 -1.7172 -10.3302 8.8297 24 1 -1.2864 -9.5387 11.0810 25 6 1.7786 -3.8016 7.8147 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2491 35 1 1.0911 -2.0256 4.2356 36 1 2.9660 -3.8911 5.2267 37 1 3.2693 -2.3211 6.0086 38 1 -0.3661 -4.3638 5.7206 39 1 1.2144 -5.2598 5.7029 40 1 1.6245 -6.4484 8.1320 41 1 1.2349 -9.5494 9.2976 42 1 2.7102 -4.3650 7.7622 43 1 1.7569 -3.0938 8.6434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264390759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:53 Heat of formation + Delta-G solvation = 25.461019 kcal Electronic energy + Delta-G solvation = -20281.856067 eV Core-core repulsion = 17135.748981 eV Total energy + Delta-G solvation = -3146.107085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82500 -38.46194 -37.89378 -34.74241 -33.34275 -32.45629 -30.27345 -27.78063 -27.76801 -27.66136 -25.10449 -24.33659 -23.34565 -21.15641 -21.04508 -19.29043 -18.36899 -17.04525 -16.33091 -16.20229 -15.51811 -15.01498 -14.78819 -14.73666 -14.60491 -14.16050 -13.57153 -13.39860 -12.98530 -12.92143 -12.86670 -12.21612 -12.17309 -11.95874 -11.84423 -11.74792 -11.70373 -11.42184 -11.26165 -10.88076 -10.78042 -10.54517 -10.50250 -10.32923 -10.15211 -10.04696 -9.84141 -9.52223 -9.11094 -8.88133 -6.97015 -5.79004 -3.07918 1.42217 2.09470 2.95341 3.40032 3.41937 3.47407 3.49860 3.90734 4.43734 4.45811 4.54040 4.57578 4.90792 4.94703 5.08934 5.13149 5.14446 5.21569 5.27661 5.37345 5.37572 5.45668 5.48663 5.55200 5.62301 5.78650 5.79454 5.79627 5.83354 5.91655 6.08077 6.19593 6.29100 6.34469 6.40510 6.58280 6.81030 7.00572 7.10144 7.34919 7.68834 8.02898 8.39552 9.50633 10.08931 10.43039 11.43434 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002457 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.509141 B =11394.992657 C =11814.980473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.074 4.074 6 C -0.218 4.218 7 C 0.629 3.371 8 O -0.527 6.527 9 N -0.711 5.711 10 C 0.131 3.869 11 C -0.128 4.128 12 H 0.089 0.911 13 C -0.162 4.162 14 C 0.166 3.834 15 H 0.076 0.924 16 N -0.713 5.713 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.142 4.142 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.404 0.596 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.081 0.919 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 20.589 -17.805 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.036 3.964 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.076 4.076 6 C -0.221 4.221 7 C 0.415 3.585 8 O -0.404 6.404 9 N -0.361 5.361 10 C 0.009 3.991 11 C -0.147 4.147 12 H 0.107 0.893 13 C -0.203 4.203 14 C 0.054 3.946 15 H 0.094 0.906 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.182 4.182 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.159 20.250 -17.592 26.824 hybrid contribution -0.863 -0.683 0.278 1.135 sum -1.022 19.567 -17.313 26.147 Atomic orbital electron populations 1.21915 0.92178 1.02987 1.02847 1.17945 0.96029 0.94396 0.87992 1.21905 1.01858 0.93310 1.02809 1.21914 1.01894 1.00715 0.95460 1.22502 0.97134 0.93968 0.94023 1.20805 1.01844 1.02504 0.96976 1.14716 0.85330 0.78225 0.80245 1.90862 1.16108 1.54064 1.79404 1.45911 1.11737 1.59389 1.19083 1.21549 0.96822 0.97113 0.83635 1.22656 0.96911 0.98568 0.96585 0.89266 1.23966 0.99191 0.94972 1.02142 1.21519 0.95110 0.86405 0.91604 0.90638 1.42424 1.09235 1.08284 1.75135 1.19347 0.89401 0.94096 1.34616 0.91046 1.24781 0.96631 0.97431 1.02167 1.69671 1.19800 1.14993 1.53506 0.86116 0.81563 0.80261 0.78226 1.20548 1.21861 1.21847 1.23453 1.00905 0.99147 0.94645 0.91865 0.91138 0.91803 0.91873 0.91098 0.91922 0.91847 0.91118 0.91844 0.76189 0.90756 0.91302 0.92741 0.90269 0.78045 0.93487 0.90013 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.43 37.16 0.31 -0.47 16 2 C 0.04 0.25 0.95 -157.30 -0.15 0.10 16 3 C -0.14 -0.80 8.43 37.16 0.31 -0.49 16 4 C -0.14 -0.86 8.43 37.16 0.31 -0.55 16 5 C -0.07 -0.76 11.77 -37.12 -0.44 -1.20 16 6 C -0.22 -2.74 13.61 -38.83 -0.53 -3.26 16 7 C 0.63 9.06 7.65 -14.33 -0.11 8.95 16 8 O -0.53 -9.56 17.08 5.27 0.09 -9.47 16 9 N -0.71 -8.63 5.55 -62.76 -0.35 -8.98 16 10 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 11 C -0.13 -1.69 3.75 -89.81 -0.34 -2.03 16 12 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 13 C -0.16 -2.65 7.43 -25.91 -0.19 -2.84 16 14 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 15 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 16 N -0.71 -17.74 5.40 -52.64 -0.28 -18.02 16 17 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 C -0.14 -2.22 7.39 -25.92 -0.19 -2.42 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 3.91 8.44 -40.82 -0.34 3.57 16 36 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 40 H 0.39 10.23 7.92 -40.82 -0.32 9.90 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -32.66 365.53 -8.28 -40.93 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.37 Total: 7.19 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.57 Total: -6.98 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.09 Total: -54.47 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.66 -8.28 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264390759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.391 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds