Wall clock time and date at job start Tue Mar 31 2020 00:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 C 1.52996 * 109.46891 * 239.99863 * 2 1 3 5 5 C 1.47199 * 109.46792 * 120.00355 * 2 1 3 6 6 C 2.64597 * 109.46886 * 120.00255 * 2 1 3 7 7 C 4.07804 * 109.46956 * 120.00185 * 2 1 3 8 8 O 1.21606 * 119.99817 * 139.57026 * 7 6 5 9 9 N 1.34771 * 119.99750 * 319.57223 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09003 * 112.84890 * 316.19493 * 11 10 9 13 13 C 1.53787 * 113.61418 * 87.49925 * 11 10 9 14 14 C 1.53789 * 87.07916 * 139.98375 * 13 11 10 15 15 H 1.09004 * 113.68906 * 89.12857 * 14 13 11 16 16 N 1.46494 * 113.61168 * 220.02104 * 14 13 11 17 17 C 1.36939 * 119.99992 * 252.49759 * 16 14 13 18 18 H 1.07998 * 119.99891 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00237 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99727 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00155 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47202 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46919 * 120.00133 * 21 19 17 24 24 H 1.48492 * 109.47586 * 240.00322 * 21 19 17 25 25 C 1.53780 * 113.61900 * 184.99939 * 11 10 9 26 26 H 1.09002 * 109.46838 * 300.00410 * 1 2 3 27 27 H 1.09004 * 109.47006 * 59.99907 * 1 2 3 28 28 H 1.08992 * 109.47513 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47407 * 299.99659 * 3 2 1 31 31 H 1.09002 * 109.47070 * 60.00059 * 3 2 1 32 32 H 1.09001 * 109.47372 * 300.00036 * 4 2 1 33 33 H 1.09004 * 109.47108 * 60.00292 * 4 2 1 34 34 H 1.09004 * 109.47368 * 180.02562 * 4 2 1 35 35 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 37 37 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 38 38 H 1.08998 * 113.61477 * 254.53206 * 13 11 10 39 39 H 1.08992 * 113.61461 * 25.43734 * 13 11 10 40 40 H 0.97000 * 120.00215 * 72.49761 * 16 14 13 41 41 H 0.96994 * 120.00007 * 179.97438 * 20 19 17 42 42 H 1.09004 * 113.61169 * 334.56803 * 25 11 10 43 43 H 1.09003 * 113.61760 * 105.46589 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6940 1.2019 6 6 2.4119 -1.2474 2.1604 7 6 2.8893 -1.9225 3.3297 8 8 4.0684 -2.2016 3.4318 9 7 2.0316 -2.2485 4.3168 10 6 2.5201 -2.9387 5.5133 11 6 1.3527 -3.1890 6.4700 12 1 0.6965 -2.3246 6.5723 13 6 0.6039 -4.5043 6.1974 14 6 0.5207 -4.6814 7.7228 15 1 -0.3638 -4.2265 8.1689 16 7 0.7358 -6.0610 8.1660 17 6 -0.3176 -6.8038 8.6282 18 1 -1.3070 -6.3725 8.6664 19 6 -0.1137 -8.1110 9.0487 20 7 1.0923 -8.6362 9.0035 21 14 -1.5506 -9.1240 9.6799 22 1 -2.7908 -8.3088 9.6300 23 1 -1.7172 -10.3302 8.8297 24 1 -1.2864 -9.5387 11.0810 25 6 1.7786 -3.8016 7.8147 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2491 35 1 1.0911 -2.0256 4.2356 36 1 2.9660 -3.8911 5.2267 37 1 3.2693 -2.3211 6.0086 38 1 -0.3661 -4.3638 5.7206 39 1 1.2144 -5.2598 5.7029 40 1 1.6245 -6.4484 8.1320 41 1 1.2349 -9.5494 9.2976 42 1 2.7102 -4.3650 7.7622 43 1 1.7569 -3.0938 8.6434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264390759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:53 Heat of formation + Delta-G solvation = 4.581111 kcal Electronic energy + Delta-G solvation = -20282.761488 eV Core-core repulsion = 17135.748981 eV Total energy + Delta-G solvation = -3147.012506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99229 -39.80582 -38.47850 -36.13725 -35.08879 -33.37193 -32.14906 -28.98326 -28.21549 -28.18741 -26.46143 -26.04608 -24.58666 -22.46170 -21.92709 -20.65497 -19.52300 -18.95124 -17.46511 -16.99749 -16.63696 -16.61418 -16.09924 -15.66139 -15.24801 -15.23054 -15.13733 -14.88100 -14.49275 -13.47491 -13.34967 -13.32058 -13.23791 -13.06308 -12.94499 -12.76107 -12.68715 -12.61757 -12.33022 -12.26237 -12.17300 -12.06458 -11.80703 -11.57264 -11.39026 -11.33566 -11.25117 -11.06426 -10.82448 -10.22882 -8.97760 -7.94666 -5.22987 0.43920 1.20860 1.47342 1.48064 1.58110 1.97648 2.40469 2.56628 3.08853 3.37524 3.69402 3.71917 3.89030 3.94670 3.95996 3.99135 4.24848 4.27800 4.36241 4.41728 4.54050 4.72815 4.73823 4.75075 4.83793 4.95785 4.96239 4.96386 4.98471 5.03237 5.06815 5.17528 5.20153 5.26802 5.34799 5.37255 5.39588 5.52304 5.72065 6.14136 6.27889 6.33856 6.98187 7.33228 8.11734 8.33225 9.29104 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002457 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.509141 B =11394.992657 C =11814.980473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.038 4.038 6 C -0.269 4.269 7 C 0.629 3.371 8 O -0.575 6.575 9 N -0.696 5.696 10 C 0.136 3.864 11 C -0.096 4.096 12 H 0.124 0.876 13 C -0.155 4.155 14 C 0.143 3.857 15 H 0.082 0.918 16 N -0.730 5.730 17 C -0.240 4.240 18 H 0.080 0.920 19 C -0.082 4.082 20 N -0.972 5.972 21 Si 0.973 3.027 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.295 1.295 25 C -0.135 4.135 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.418 0.582 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.068 0.932 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 23.049 -19.158 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.030 3.970 3 C -0.198 4.198 4 C -0.200 4.200 5 C -0.041 4.041 6 C -0.272 4.272 7 C 0.417 3.583 8 O -0.456 6.456 9 N -0.346 5.346 10 C 0.013 3.987 11 C -0.115 4.115 12 H 0.142 0.858 13 C -0.196 4.196 14 C 0.034 3.966 15 H 0.100 0.900 16 N -0.368 5.368 17 C -0.372 4.372 18 H 0.098 0.902 19 C -0.274 4.274 20 N -0.623 5.623 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.223 1.223 24 H -0.222 1.222 25 C -0.175 4.175 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.257 22.779 -18.959 29.723 hybrid contribution -0.260 -1.332 0.607 1.486 sum -2.517 21.447 -18.353 28.340 Atomic orbital electron populations 1.21933 0.90641 1.03059 1.04101 1.18315 0.97210 0.94898 0.86622 1.21930 1.01395 0.92353 1.04081 1.21949 1.01418 1.00646 0.95998 1.23375 0.95114 0.92023 0.93588 1.20601 1.04175 1.04539 0.97840 1.14929 0.84806 0.77668 0.80880 1.90827 1.18077 1.56250 1.80492 1.45750 1.12276 1.58379 1.18222 1.21398 0.96901 0.96405 0.84016 1.22486 0.96435 0.98032 0.94515 0.85838 1.23756 1.00020 0.96226 0.99613 1.21958 0.97140 0.84256 0.93257 0.89967 1.42652 1.08011 1.10407 1.75705 1.19773 0.90332 0.94341 1.32736 0.90227 1.25614 0.99097 0.98934 1.03710 1.69832 1.21923 1.15004 1.55590 0.85066 0.79191 0.78479 0.77002 1.18716 1.22328 1.22190 1.23330 0.98592 0.98689 0.96865 0.91790 0.88783 0.92343 0.92691 0.88558 0.91983 0.92502 0.88485 0.92695 0.74475 0.92858 0.90806 0.91379 0.92581 0.79646 0.94134 0.91339 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.43 71.98 0.61 -0.52 16 2 C 0.03 0.34 0.95 -53.99 -0.05 0.29 16 3 C -0.14 -1.22 8.43 71.98 0.61 -0.61 16 4 C -0.14 -1.42 8.43 71.98 0.61 -0.81 16 5 C -0.04 -0.75 11.77 31.13 0.37 -0.38 16 6 C -0.27 -6.66 13.61 30.02 0.41 -6.25 16 7 C 0.63 18.27 7.65 85.49 0.65 18.92 16 8 O -0.58 -21.57 17.08 -4.05 -0.07 -21.64 16 9 N -0.70 -16.20 5.55 -470.74 -2.61 -18.82 16 10 C 0.14 3.48 5.51 86.38 0.48 3.95 16 11 C -0.10 -2.32 3.75 -10.27 -0.04 -2.35 16 12 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.16 -4.93 7.43 31.13 0.23 -4.69 16 14 C 0.14 5.36 4.48 45.52 0.20 5.56 16 15 H 0.08 2.96 8.10 -2.38 -0.02 2.94 16 16 N -0.73 -36.77 5.40 -320.44 -1.73 -38.50 16 17 C -0.24 -13.27 9.97 84.03 0.84 -12.43 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 20 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 21 Si 0.97 46.29 29.55 68.60 2.03 48.31 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 C -0.14 -4.07 7.39 31.12 0.23 -3.84 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.42 7.25 8.44 -92.71 -0.78 6.46 16 36 H 0.05 1.62 7.84 -2.39 -0.02 1.60 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.06 7.90 -2.39 -0.02 2.04 16 40 H 0.37 20.39 7.92 -92.71 -0.73 19.65 16 41 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.07 2.27 8.08 -2.38 -0.02 2.25 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -72.77 365.53 2.99 -69.79 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.52 Total: 28.43 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.61 Total: -7.42 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -4.06 Total: -117.47 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.07 Total: -21.64 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -72.77 2.99 -69.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264390759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.369 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds