Wall clock time and date at job start Tue Mar 31 2020 00:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99893 * 2 1 4 4 C 1.53000 * 109.47031 * 125.00157 * 3 2 1 5 5 C 1.50692 * 109.47377 * 179.97438 * 4 3 2 6 6 O 1.21289 * 119.99811 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00521 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00772 * 180.27416 * 7 5 4 9 9 H 1.09009 * 115.54596 * 9.04115 * 8 7 5 10 10 C 1.53025 * 117.50745 * 223.31655 * 8 7 5 11 11 C 1.52805 * 117.50617 * 154.72528 * 8 7 5 12 12 C 1.53185 * 117.71531 * 359.86190 * 11 8 7 13 13 C 1.53352 * 108.77128 * 158.88829 * 12 11 8 14 14 N 1.46838 * 108.81748 * 51.30684 * 13 12 11 15 15 C 1.36937 * 120.38119 * 123.07894 * 14 13 12 16 16 H 1.08003 * 119.99409 * 208.92033 * 15 14 13 17 17 C 1.38805 * 120.00358 * 28.91788 * 15 14 13 18 18 N 1.31619 * 119.99885 * 17.84439 * 17 15 14 19 19 Si 1.86800 * 120.00276 * 197.84882 * 17 15 14 20 20 H 1.48500 * 109.47117 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47477 * 119.99957 * 19 17 15 22 22 H 1.48494 * 109.47043 * 239.99847 * 19 17 15 23 23 C 1.46848 * 119.23573 * 303.10490 * 14 13 12 24 24 C 1.53180 * 117.71702 * 215.10470 * 11 8 7 25 25 H 1.07996 * 120.00294 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00221 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99884 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47340 * 4.99939 * 3 2 1 29 29 H 1.08998 * 109.47323 * 244.99708 * 3 2 1 30 30 H 1.08999 * 109.47236 * 59.99719 * 4 3 2 31 31 H 1.09003 * 109.47008 * 300.00283 * 4 3 2 32 32 H 0.97001 * 119.99721 * 0.02562 * 7 5 4 33 33 H 1.09004 * 117.50085 * 359.97438 * 10 8 7 34 34 H 1.08999 * 117.51057 * 145.04158 * 10 8 7 35 35 H 1.08999 * 109.59200 * 278.67768 * 12 11 8 36 36 H 1.09009 * 109.58612 * 39.10487 * 12 11 8 37 37 H 1.09000 * 109.58131 * 291.50738 * 13 12 11 38 38 H 1.08999 * 109.57644 * 171.10920 * 13 12 11 39 39 H 0.97001 * 120.00044 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.57560 * 297.10366 * 23 14 13 41 41 H 1.08999 * 109.58034 * 176.70281 * 23 14 13 42 42 H 1.09008 * 109.58779 * 320.90230 * 24 11 8 43 43 H 1.08996 * 109.59240 * 81.18658 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7889 2.6378 1.1813 6 8 3.5704 3.4643 0.3209 7 7 4.7054 2.8869 2.1376 8 6 5.4341 4.1578 2.1409 9 1 5.0744 4.9077 1.4362 10 6 6.9388 4.1091 2.4149 11 6 5.9843 4.6524 3.4779 12 6 5.7319 3.7867 4.7162 13 6 6.7655 4.1480 5.7899 14 7 6.7634 5.6043 5.9783 15 6 6.5274 6.1422 7.2153 16 1 6.0724 7.1179 7.3018 17 6 6.8727 5.4336 8.3577 18 7 7.7247 4.4335 8.2794 19 14 6.1282 5.8993 10.0065 20 1 5.2069 7.0500 9.8263 21 1 5.3749 4.7425 10.5540 22 1 7.2112 6.2760 10.9499 23 6 7.0169 6.4771 4.8249 24 6 5.9883 6.1630 3.7317 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 3.7399 0.5065 1.0921 31 1 2.4772 1.2355 2.1130 32 1 4.8799 2.2260 2.8259 33 1 7.3865 3.1313 2.5931 34 1 7.5696 4.8269 1.8905 35 1 4.7283 3.9767 5.0965 36 1 5.8318 2.7337 4.4525 37 1 7.7550 3.8227 5.4686 38 1 6.5044 3.6579 6.7278 39 1 7.9664 3.9385 9.0779 40 1 8.0219 6.2960 4.4437 41 1 6.9213 7.5198 5.1278 42 1 6.2581 6.6870 2.8147 43 1 4.9978 6.4816 4.0566 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266365498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:56 Heat of formation + Delta-G solvation = 15.278714 kcal Electronic energy + Delta-G solvation = -21559.705088 eV Core-core repulsion = 18413.156465 eV Total energy + Delta-G solvation = -3146.548623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.00606 -38.48877 -35.74219 -35.32150 -33.16848 -31.60748 -30.67162 -30.11927 -28.22817 -24.89692 -24.34030 -22.47771 -21.85550 -20.79214 -20.20248 -20.02887 -18.22425 -17.11584 -16.60035 -15.96504 -15.84463 -15.01971 -14.86362 -14.25232 -14.12745 -13.65472 -13.56401 -13.40231 -13.08453 -12.77804 -12.61687 -12.34644 -12.26972 -11.70981 -11.50658 -11.37597 -11.30137 -11.26304 -10.96986 -10.74632 -10.49988 -10.28485 -10.01885 -9.90233 -9.71038 -9.59729 -9.57640 -9.33874 -8.48244 -8.43117 -6.65076 -5.80508 -3.23286 1.99462 2.59681 3.15984 3.35546 3.44010 3.46432 4.18765 4.48688 4.52543 4.67136 4.88894 5.00244 5.04140 5.07028 5.15272 5.16184 5.35554 5.38018 5.51088 5.58689 5.63065 5.72638 5.88881 5.92906 6.04838 6.10232 6.12535 6.27625 6.35814 6.44204 6.50343 6.55982 6.59575 6.65406 6.70651 6.82744 6.99210 7.32357 7.53846 7.63092 7.79036 8.23851 8.45162 9.20630 9.84267 10.40941 11.27315 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.003455 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.882796 B = 8101.285565 C = 8798.389241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.514 3.486 6 O -0.547 6.547 7 N -0.696 5.696 8 C 0.068 3.932 9 H 0.130 0.870 10 C -0.183 4.183 11 C -0.098 4.098 12 C -0.104 4.104 13 C 0.174 3.826 14 N -0.590 5.590 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.149 3.851 24 C -0.098 4.098 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.402 0.598 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.018 0.982 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -8.071 -13.747 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.173 4.173 3 C -0.116 4.116 4 C -0.177 4.177 5 C 0.300 3.700 6 O -0.424 6.424 7 N -0.346 5.346 8 C -0.038 4.038 9 H 0.148 0.852 10 C -0.221 4.221 11 C -0.099 4.099 12 C -0.144 4.144 13 C 0.047 3.953 14 N -0.312 5.312 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.023 3.977 24 C -0.137 4.137 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.237 0.763 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.129 -7.569 -14.222 18.045 hybrid contribution -0.129 -0.299 1.247 1.289 sum -8.258 -7.868 -12.975 17.276 Atomic orbital electron populations 1.23887 0.96003 1.01899 1.01249 1.22984 0.96106 0.98376 0.99818 1.20495 0.97804 0.95381 0.97964 1.21627 0.99072 0.95619 1.01351 1.20684 0.79392 0.88917 0.80960 1.90682 1.65941 1.48331 1.37494 1.45461 1.40142 1.18945 1.30020 1.21870 0.92174 0.87898 1.01812 0.85227 1.23518 0.92362 1.02762 1.03482 1.21949 1.01122 0.96995 0.89855 1.21809 1.01983 0.95457 0.95110 1.20744 0.93466 0.84731 0.96312 1.43980 1.82177 1.00818 1.04229 1.19240 1.33041 1.03239 0.82585 0.91730 1.25044 0.97421 0.99333 0.97893 1.70045 1.32804 1.23731 1.28055 0.86253 0.78733 0.77864 0.84127 1.20236 1.21572 1.21747 1.20860 0.94325 0.94644 0.87914 1.21684 1.01376 0.91465 0.99192 0.88497 0.88533 0.87327 0.90691 0.90226 0.88782 0.88672 0.76253 0.88962 0.88529 0.92088 0.93792 0.96424 0.89229 0.93718 0.96246 0.92654 0.92903 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 14.32 29.01 0.42 -1.04 16 2 C -0.15 -1.22 9.52 -36.03 -0.34 -1.56 16 3 C -0.08 -0.74 4.95 -27.88 -0.14 -0.88 16 4 C -0.14 -1.23 5.68 -27.89 -0.16 -1.39 16 5 C 0.51 6.66 7.83 -10.99 -0.09 6.57 16 6 O -0.55 -9.11 15.55 5.55 0.09 -9.03 16 7 N -0.70 -8.87 5.34 -53.89 -0.29 -9.15 16 8 C 0.07 1.00 6.14 -68.02 -0.42 0.58 16 9 H 0.13 2.04 7.40 -51.92 -0.38 1.65 16 10 C -0.18 -2.64 9.86 -26.80 -0.26 -2.91 16 11 C -0.10 -1.60 1.94 -154.50 -0.30 -1.90 16 12 C -0.10 -1.88 5.37 -26.45 -0.14 -2.02 16 13 C 0.17 3.99 5.40 -3.68 -0.02 3.97 16 14 N -0.59 -14.50 2.94 -172.26 -0.51 -15.01 16 15 C -0.25 -6.81 9.54 -15.06 -0.14 -6.96 16 16 H 0.06 1.73 7.89 -52.48 -0.41 1.32 16 17 C 0.00 0.04 4.88 -17.43 -0.09 -0.04 16 18 N -0.90 -25.75 11.23 55.49 0.62 -25.13 16 19 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.15 3.09 6.52 -3.67 -0.02 3.07 16 24 C -0.10 -1.70 5.83 -26.46 -0.15 -1.85 16 25 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 26 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 27 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 29 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.40 4.40 7.12 -40.82 -0.29 4.10 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.04 0.67 6.75 -51.92 -0.35 0.32 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.09 2.32 5.93 -51.93 -0.31 2.01 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 42 H 0.05 0.80 8.10 -51.92 -0.42 0.38 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -30.81 348.12 -8.91 -39.72 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.18 Total: 3.32 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.86 Total: -6.36 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.17 Total: -49.29 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.81 -8.91 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266365498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.995 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds