Wall clock time and date at job start Tue Mar 31 2020 00:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99893 * 2 1 4 4 C 1.53000 * 109.47031 * 125.00157 * 3 2 1 5 5 C 1.50692 * 109.47377 * 179.97438 * 4 3 2 6 6 O 1.21289 * 119.99811 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00521 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00772 * 180.27416 * 7 5 4 9 9 H 1.09009 * 115.54596 * 9.04115 * 8 7 5 10 10 C 1.53025 * 117.50745 * 223.31655 * 8 7 5 11 11 C 1.52805 * 117.50617 * 154.72528 * 8 7 5 12 12 C 1.53185 * 117.71531 * 359.86190 * 11 8 7 13 13 C 1.53352 * 108.77128 * 158.88829 * 12 11 8 14 14 N 1.46838 * 108.81748 * 51.30684 * 13 12 11 15 15 C 1.36937 * 120.38119 * 123.07894 * 14 13 12 16 16 H 1.08003 * 119.99409 * 208.92033 * 15 14 13 17 17 C 1.38805 * 120.00358 * 28.91788 * 15 14 13 18 18 N 1.31619 * 119.99885 * 17.84439 * 17 15 14 19 19 Si 1.86800 * 120.00276 * 197.84882 * 17 15 14 20 20 H 1.48500 * 109.47117 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47477 * 119.99957 * 19 17 15 22 22 H 1.48494 * 109.47043 * 239.99847 * 19 17 15 23 23 C 1.46848 * 119.23573 * 303.10490 * 14 13 12 24 24 C 1.53180 * 117.71702 * 215.10470 * 11 8 7 25 25 H 1.07996 * 120.00294 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00221 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99884 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47340 * 4.99939 * 3 2 1 29 29 H 1.08998 * 109.47323 * 244.99708 * 3 2 1 30 30 H 1.08999 * 109.47236 * 59.99719 * 4 3 2 31 31 H 1.09003 * 109.47008 * 300.00283 * 4 3 2 32 32 H 0.97001 * 119.99721 * 0.02562 * 7 5 4 33 33 H 1.09004 * 117.50085 * 359.97438 * 10 8 7 34 34 H 1.08999 * 117.51057 * 145.04158 * 10 8 7 35 35 H 1.08999 * 109.59200 * 278.67768 * 12 11 8 36 36 H 1.09009 * 109.58612 * 39.10487 * 12 11 8 37 37 H 1.09000 * 109.58131 * 291.50738 * 13 12 11 38 38 H 1.08999 * 109.57644 * 171.10920 * 13 12 11 39 39 H 0.97001 * 120.00044 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.57560 * 297.10366 * 23 14 13 41 41 H 1.08999 * 109.58034 * 176.70281 * 23 14 13 42 42 H 1.09008 * 109.58779 * 320.90230 * 24 11 8 43 43 H 1.08996 * 109.59240 * 81.18658 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7889 2.6378 1.1813 6 8 3.5704 3.4643 0.3209 7 7 4.7054 2.8869 2.1376 8 6 5.4341 4.1578 2.1409 9 1 5.0744 4.9077 1.4362 10 6 6.9388 4.1091 2.4149 11 6 5.9843 4.6524 3.4779 12 6 5.7319 3.7867 4.7162 13 6 6.7655 4.1480 5.7899 14 7 6.7634 5.6043 5.9783 15 6 6.5274 6.1422 7.2153 16 1 6.0724 7.1179 7.3018 17 6 6.8727 5.4336 8.3577 18 7 7.7247 4.4335 8.2794 19 14 6.1282 5.8993 10.0065 20 1 5.2069 7.0500 9.8263 21 1 5.3749 4.7425 10.5540 22 1 7.2112 6.2760 10.9499 23 6 7.0169 6.4771 4.8249 24 6 5.9883 6.1630 3.7317 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 3.7399 0.5065 1.0921 31 1 2.4772 1.2355 2.1130 32 1 4.8799 2.2260 2.8259 33 1 7.3865 3.1313 2.5931 34 1 7.5696 4.8269 1.8905 35 1 4.7283 3.9767 5.0965 36 1 5.8318 2.7337 4.4525 37 1 7.7550 3.8227 5.4686 38 1 6.5044 3.6579 6.7278 39 1 7.9664 3.9385 9.0779 40 1 8.0219 6.2960 4.4437 41 1 6.9213 7.5198 5.1278 42 1 6.2581 6.6870 2.8147 43 1 4.9978 6.4816 4.0566 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266365498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:55 Heat of formation + Delta-G solvation = -2.532100 kcal Electronic energy + Delta-G solvation = -21560.477423 eV Core-core repulsion = 18413.156465 eV Total energy + Delta-G solvation = -3147.320958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14134 -39.78220 -37.17534 -36.22227 -34.53956 -33.27895 -31.74556 -31.49163 -29.85830 -26.26158 -25.67563 -24.05619 -23.14041 -22.26204 -21.28108 -20.64049 -19.81309 -18.45008 -17.96648 -17.17458 -16.79571 -16.71708 -15.82375 -15.67224 -15.43508 -15.22578 -14.90640 -14.67725 -14.47210 -14.09984 -13.76251 -13.53063 -13.34734 -13.06471 -13.05075 -12.89178 -12.60815 -12.49756 -12.29099 -11.99832 -11.96724 -11.88742 -11.78315 -11.36066 -11.26334 -10.98694 -10.67697 -10.48824 -10.19627 -9.64474 -8.61627 -7.86234 -5.32138 1.40635 1.45694 1.48277 1.58470 1.59031 2.16749 2.51822 2.95975 3.28454 3.63770 3.71649 3.83824 3.87717 3.99472 4.00250 4.13727 4.20854 4.36215 4.47792 4.53105 4.62956 4.70793 4.72017 4.85792 4.91081 4.94725 4.98753 5.00671 5.08974 5.10649 5.22096 5.23266 5.31056 5.37254 5.52666 5.56028 5.66376 5.77561 5.79280 5.92672 6.41716 6.55102 7.17211 7.24838 7.89113 8.39930 9.18829 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.003455 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.882796 B = 8101.285565 C = 8798.389241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C -0.078 4.078 4 C -0.128 4.128 5 C 0.511 3.489 6 O -0.588 6.588 7 N -0.692 5.692 8 C 0.084 3.916 9 H 0.122 0.878 10 C -0.170 4.170 11 C -0.118 4.118 12 C -0.088 4.088 13 C 0.180 3.820 14 N -0.609 5.609 15 C -0.262 4.262 16 H 0.062 0.938 17 C -0.049 4.049 18 N -0.932 5.932 19 Si 0.963 3.037 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.293 1.293 23 C 0.146 3.854 24 C -0.087 4.087 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.413 0.587 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.073 0.927 37 H -0.001 1.001 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.018 0.982 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 -9.206 -14.666 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.176 4.176 3 C -0.115 4.115 4 C -0.168 4.168 5 C 0.300 3.700 6 O -0.468 6.468 7 N -0.342 5.342 8 C -0.022 4.022 9 H 0.140 0.860 10 C -0.208 4.208 11 C -0.119 4.119 12 C -0.127 4.127 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.393 4.393 16 H 0.079 0.921 17 C -0.244 4.244 18 N -0.578 5.578 19 Si 0.792 3.208 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.220 1.220 23 C 0.020 3.980 24 C -0.126 4.126 25 H 0.110 0.890 26 H 0.129 0.871 27 H 0.145 0.855 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.250 0.750 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.017 0.983 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.931 -8.711 -15.152 19.627 hybrid contribution 0.136 0.093 1.486 1.495 sum -8.795 -8.619 -13.666 18.396 Atomic orbital electron populations 1.24047 0.96149 1.02433 1.00714 1.23010 0.96169 0.98157 1.00235 1.20443 0.97577 0.95768 0.97747 1.21662 0.99194 0.94041 1.01863 1.21388 0.78889 0.89731 0.79994 1.90669 1.67100 1.49956 1.39064 1.45452 1.39895 1.18430 1.30390 1.21656 0.92602 0.88493 0.99474 0.86022 1.23596 0.92369 1.03265 1.01587 1.21809 1.04054 0.96041 0.90020 1.21537 0.99386 0.97541 0.94247 1.20558 0.93900 0.83858 0.96293 1.44254 1.82568 1.01861 1.04534 1.19515 1.32512 1.03231 0.84025 0.92076 1.25749 0.98018 0.99676 1.00965 1.70181 1.34126 1.24848 1.28609 0.85270 0.77808 0.77648 0.80090 1.19404 1.21467 1.21962 1.20979 0.95330 0.93896 0.87770 1.21514 0.99524 0.92748 0.98837 0.89039 0.87050 0.85541 0.92495 0.91270 0.85980 0.87046 0.74994 0.88041 0.87457 0.93206 0.90854 0.98279 0.92605 0.94074 0.96438 0.93036 0.90244 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.60 14.32 67.78 0.97 -1.63 16 2 C -0.16 -2.12 9.52 25.64 0.24 -1.88 16 3 C -0.08 -1.34 4.95 29.85 0.15 -1.19 16 4 C -0.13 -1.97 5.68 29.85 0.17 -1.80 16 5 C 0.51 12.23 7.83 87.66 0.69 12.91 16 6 O -0.59 -19.01 15.55 -3.06 -0.05 -19.06 16 7 N -0.69 -15.86 5.34 -442.79 -2.37 -18.23 16 8 C 0.08 2.27 6.14 44.93 0.28 2.55 16 9 H 0.12 3.59 7.40 -2.38 -0.02 3.57 16 10 C -0.17 -4.47 9.86 30.55 0.30 -4.16 16 11 C -0.12 -3.66 1.94 -52.18 -0.10 -3.76 16 12 C -0.09 -3.08 5.37 30.77 0.17 -2.91 16 13 C 0.18 8.36 5.40 86.43 0.47 8.83 16 14 N -0.61 -30.34 2.94 -698.91 -2.05 -32.39 16 15 C -0.26 -14.44 9.54 84.03 0.80 -13.64 16 16 H 0.06 3.33 7.89 -2.91 -0.02 3.30 16 17 C -0.05 -2.69 4.88 84.86 0.41 -2.28 16 18 N -0.93 -54.36 11.23 21.65 0.24 -54.12 16 19 Si 0.96 44.61 29.59 68.60 2.03 46.64 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 C 0.15 6.02 6.52 86.43 0.56 6.59 16 24 C -0.09 -2.91 5.83 30.77 0.18 -2.74 16 25 H 0.09 1.28 7.84 -2.91 -0.02 1.26 16 26 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 27 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 28 H 0.06 1.17 7.75 -2.39 -0.02 1.15 16 29 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 7.71 7.12 -92.71 -0.66 7.05 16 33 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 2.09 6.75 -2.38 -0.02 2.08 16 37 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.06 2.97 5.93 -2.39 -0.01 2.95 16 39 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 2.11 7.92 -2.39 -0.02 2.09 16 42 H 0.08 2.23 8.10 -2.38 -0.02 2.21 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -67.62 348.12 3.41 -64.21 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.32 Total: 18.04 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.29 Total: -5.10 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -4.18 Total: -104.73 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.62 3.41 -64.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266365498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.680 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds