Wall clock time and date at job start Tue Mar 31 2020 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32999 * 119.99940 * 2 1 4 4 C 1.50701 * 119.99685 * 179.97438 * 3 2 1 5 5 C 1.47099 * 120.00028 * 0.02562 * 3 2 1 6 6 O 1.21612 * 119.99881 * 0.02562 * 5 3 2 7 7 N 1.34777 * 120.00065 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00358 * 179.97438 * 7 5 3 9 9 H 1.09007 * 115.56103 * 9.32134 * 8 7 5 10 10 C 1.53033 * 117.50534 * 223.61222 * 8 7 5 11 11 C 1.52841 * 59.98843 * 252.53337 * 10 8 7 12 12 C 1.53178 * 117.65802 * 252.27202 * 11 10 8 13 13 C 1.53351 * 108.76826 * 269.97797 * 12 11 10 14 14 N 1.46843 * 108.81556 * 308.69024 * 13 12 11 15 15 C 1.36936 * 120.38776 * 236.92137 * 14 13 12 16 16 H 1.07996 * 120.00397 * 151.80008 * 15 14 13 17 17 C 1.38818 * 119.99591 * 331.80514 * 15 14 13 18 18 N 1.31621 * 119.99603 * 159.31022 * 17 15 14 19 19 Si 1.86801 * 119.99962 * 339.30458 * 17 15 14 20 20 H 1.48499 * 109.46863 * 94.26096 * 19 17 15 21 21 H 1.48503 * 109.46850 * 214.25660 * 19 17 15 22 22 H 1.48492 * 109.47446 * 334.26105 * 19 17 15 23 23 C 1.46853 * 119.23311 * 56.90063 * 14 13 12 24 24 C 1.53185 * 117.65532 * 107.69629 * 11 10 8 25 25 H 1.08996 * 109.47056 * 59.99548 * 1 2 3 26 26 H 1.08997 * 109.47028 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47267 * 299.99792 * 1 2 3 28 28 H 1.07994 * 119.99991 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47088 * 269.99730 * 4 3 2 30 30 H 1.08996 * 109.47543 * 30.00220 * 4 3 2 31 31 H 1.09006 * 109.46981 * 150.00551 * 4 3 2 32 32 H 0.97000 * 119.99873 * 0.02562 * 7 5 3 33 33 H 1.09004 * 117.50437 * 145.04073 * 10 8 7 34 34 H 1.09002 * 117.50653 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.58994 * 29.76027 * 12 11 10 36 36 H 1.09008 * 109.58901 * 150.19321 * 12 11 10 37 37 H 1.09004 * 109.58141 * 188.89570 * 13 12 11 38 38 H 1.08992 * 109.58091 * 68.49205 * 13 12 11 39 39 H 0.97001 * 119.99452 * 179.97438 * 18 17 15 40 40 H 1.08992 * 109.58270 * 183.30051 * 23 14 13 41 41 H 1.08997 * 109.57770 * 62.88976 * 23 14 13 42 42 H 1.08999 * 109.58923 * 209.80490 * 24 11 10 43 43 H 1.08999 * 109.58976 * 330.23627 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.2203 2.4257 0.0015 7 7 2.1103 3.5929 0.0011 8 6 1.3779 4.8617 0.0011 9 1 0.3023 4.7838 0.1599 10 6 1.8760 5.9653 -0.9347 11 6 2.0897 6.0879 0.5737 12 6 1.2424 7.1151 1.3307 13 6 1.9898 8.4541 1.3486 14 7 3.3576 8.2266 1.8320 15 6 3.8278 8.9044 2.9250 16 1 4.5904 8.4614 3.5482 17 6 3.3239 10.1609 3.2320 18 7 3.4462 10.6388 4.4523 19 14 2.4726 11.1736 1.9132 20 1 1.0072 10.9424 1.9806 21 1 2.7571 12.6142 2.1346 22 1 2.9765 10.7692 0.5762 23 6 4.2154 7.2634 1.1298 24 6 3.5132 5.9003 1.1077 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.0469 -0.9353 0.0004 29 1 4.0419 1.1520 1.0284 30 1 4.0425 0.2617 -0.5129 31 1 4.0425 2.0417 -0.5133 32 1 3.0803 3.5929 0.0007 33 1 1.1281 6.6135 -1.3916 34 1 2.7484 5.7472 -1.5507 35 1 0.2830 7.2389 0.8285 36 1 1.0807 6.7732 2.3531 37 1 1.4781 9.1492 2.0143 38 1 2.0226 8.8676 0.3407 39 1 3.0944 11.5170 4.6667 40 1 5.1684 7.1749 1.6514 41 1 4.3860 7.6031 0.1083 42 1 3.4738 5.4930 2.1179 43 1 4.0605 5.2179 0.4574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266369516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:02 Heat of formation + Delta-G solvation = 24.807600 kcal Electronic energy + Delta-G solvation = -22086.903871 eV Core-core repulsion = 18940.768451 eV Total energy + Delta-G solvation = -3146.135420 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.23883 -38.76473 -35.87715 -35.05953 -33.33337 -31.76648 -30.55827 -30.03838 -28.61111 -25.25129 -24.20924 -23.46216 -23.01411 -21.39686 -20.76386 -19.44660 -18.34810 -16.68538 -16.50501 -16.04945 -15.19092 -15.11698 -14.61900 -14.24884 -14.14961 -13.80975 -13.68639 -13.38712 -12.99394 -12.88016 -12.83240 -12.78757 -12.29437 -12.16083 -12.12807 -11.88071 -11.72507 -11.65275 -11.16201 -10.78695 -10.61207 -10.30223 -9.97124 -9.84829 -9.67364 -9.48169 -9.43238 -9.29598 -8.70747 -8.41054 -6.94255 -5.94991 -3.30743 1.21255 3.08382 3.13821 3.32492 3.48815 3.52137 4.07538 4.51748 4.53340 4.61259 4.82240 4.93842 4.97335 4.99413 5.13213 5.15948 5.30770 5.31926 5.43288 5.45198 5.64106 5.69771 5.73302 5.85286 5.89289 5.92894 5.98499 6.05290 6.15572 6.23831 6.32077 6.36132 6.37910 6.43439 6.54469 6.61554 6.70323 6.71200 6.95740 7.50154 7.98230 8.19811 8.33535 8.95602 9.72802 10.11032 11.21061 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034273 B = 0.003833 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.782681 B = 7303.800535 C = 7559.273580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.115 4.115 5 C 0.551 3.449 6 O -0.540 6.540 7 N -0.693 5.693 8 C 0.075 3.925 9 H 0.133 0.867 10 C -0.185 4.185 11 C -0.102 4.102 12 C -0.098 4.098 13 C 0.132 3.868 14 N -0.604 5.604 15 C -0.261 4.261 16 H 0.084 0.916 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.882 3.118 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.153 3.847 24 C -0.098 4.098 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.064 0.936 41 H 0.023 0.977 42 H 0.069 0.931 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 -18.883 -11.259 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.172 4.172 5 C 0.341 3.659 6 O -0.419 6.419 7 N -0.343 5.343 8 C -0.031 4.031 9 H 0.151 0.849 10 C -0.223 4.223 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.006 3.994 14 N -0.327 5.327 15 C -0.390 4.390 16 H 0.102 0.898 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.713 3.287 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.027 3.973 24 C -0.137 4.137 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.237 0.763 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.399 -18.732 -11.131 21.921 hybrid contribution 0.065 0.706 -0.713 1.005 sum -2.334 -18.026 -11.843 21.694 Atomic orbital electron populations 1.21029 0.91733 1.00843 1.04255 1.23614 0.97266 0.96578 0.91574 1.21476 0.96406 0.93169 1.08866 1.20781 0.90915 1.02840 1.02699 1.18381 0.87285 0.83957 0.76281 1.90767 1.13583 1.87527 1.50066 1.45368 1.10016 1.04726 1.74219 1.21852 0.96926 0.79257 1.05019 0.84929 1.23564 1.03440 1.01737 0.93607 1.21931 0.97344 0.96711 0.94356 1.21686 0.96405 0.95955 0.99740 1.21288 0.86137 0.94486 0.97490 1.44272 1.08051 1.47297 1.33109 1.18930 1.22313 0.97266 1.00454 0.89809 1.25300 0.99034 0.96884 0.96332 1.69845 1.48575 1.19074 1.17630 0.86933 0.78635 0.79329 0.83807 1.21634 1.23199 1.19489 1.20859 0.93413 0.87712 0.95311 1.21617 0.92551 0.99336 1.00232 0.90115 0.93118 0.90043 0.85882 0.90855 0.91148 0.91784 0.76291 0.88355 0.88920 0.92553 0.91116 0.90967 0.95566 0.92781 0.91772 0.95869 0.91271 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.45 36.00 0.30 -0.91 16 2 C -0.07 -0.63 9.95 -36.13 -0.36 -0.99 16 3 C -0.20 -1.97 6.00 -102.85 -0.62 -2.59 16 4 C -0.12 -0.83 9.61 36.01 0.35 -0.49 16 5 C 0.55 7.26 7.72 -12.67 -0.10 7.17 16 6 O -0.54 -8.63 12.64 5.27 0.07 -8.56 16 7 N -0.69 -8.57 5.29 -55.02 -0.29 -8.86 16 8 C 0.08 1.05 6.14 -67.96 -0.42 0.63 16 9 H 0.13 2.01 7.40 -51.93 -0.38 1.63 16 10 C -0.18 -2.48 9.86 -26.80 -0.26 -2.74 16 11 C -0.10 -1.58 1.94 -154.45 -0.30 -1.88 16 12 C -0.10 -1.76 5.83 -26.46 -0.15 -1.92 16 13 C 0.13 2.86 4.23 -3.67 -0.02 2.84 16 14 N -0.60 -14.17 2.71 -172.25 -0.47 -14.63 16 15 C -0.26 -7.26 10.00 -15.06 -0.15 -7.41 16 16 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 17 C 0.02 0.68 5.23 -17.43 -0.09 0.58 16 18 N -0.91 -27.87 13.97 55.49 0.78 -27.09 16 19 Si 0.88 22.38 24.40 -169.99 -4.15 18.23 16 20 H -0.29 -7.07 6.66 56.52 0.38 -6.70 16 21 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 22 H -0.27 -6.71 6.65 56.52 0.38 -6.34 16 23 C 0.15 2.92 6.52 -3.67 -0.02 2.89 16 24 C -0.10 -1.53 5.37 -26.45 -0.14 -1.67 16 25 H 0.08 0.92 7.22 -51.93 -0.38 0.54 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.96 7.22 -51.93 -0.37 0.58 16 28 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 6.71 -51.93 -0.35 0.08 16 32 H 0.40 4.17 5.22 -40.82 -0.21 3.96 16 33 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 37 H 0.07 1.73 4.31 -51.93 -0.22 1.50 16 38 H 0.03 0.56 7.27 -51.93 -0.38 0.18 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.61 6.75 -51.93 -0.35 0.26 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -31.97 333.87 -7.90 -39.87 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.89 Total: 2.49 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.98 Total: -6.48 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.02 Total: -50.59 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.07 Total: -8.56 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.15 Total: 18.23 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.97 -7.90 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266369516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.676 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds