Wall clock time and date at job start Tue Mar 31 2020 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32999 * 119.99940 * 2 1 4 4 C 1.50701 * 119.99685 * 179.97438 * 3 2 1 5 5 C 1.47099 * 120.00028 * 0.02562 * 3 2 1 6 6 O 1.21612 * 119.99881 * 0.02562 * 5 3 2 7 7 N 1.34777 * 120.00065 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00358 * 179.97438 * 7 5 3 9 9 H 1.09007 * 115.56103 * 9.32134 * 8 7 5 10 10 C 1.53033 * 117.50534 * 223.61222 * 8 7 5 11 11 C 1.52841 * 59.98843 * 252.53337 * 10 8 7 12 12 C 1.53178 * 117.65802 * 252.27202 * 11 10 8 13 13 C 1.53351 * 108.76826 * 269.97797 * 12 11 10 14 14 N 1.46843 * 108.81556 * 308.69024 * 13 12 11 15 15 C 1.36936 * 120.38776 * 236.92137 * 14 13 12 16 16 H 1.07996 * 120.00397 * 151.80008 * 15 14 13 17 17 C 1.38818 * 119.99591 * 331.80514 * 15 14 13 18 18 N 1.31621 * 119.99603 * 159.31022 * 17 15 14 19 19 Si 1.86801 * 119.99962 * 339.30458 * 17 15 14 20 20 H 1.48499 * 109.46863 * 94.26096 * 19 17 15 21 21 H 1.48503 * 109.46850 * 214.25660 * 19 17 15 22 22 H 1.48492 * 109.47446 * 334.26105 * 19 17 15 23 23 C 1.46853 * 119.23311 * 56.90063 * 14 13 12 24 24 C 1.53185 * 117.65532 * 107.69629 * 11 10 8 25 25 H 1.08996 * 109.47056 * 59.99548 * 1 2 3 26 26 H 1.08997 * 109.47028 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47267 * 299.99792 * 1 2 3 28 28 H 1.07994 * 119.99991 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47088 * 269.99730 * 4 3 2 30 30 H 1.08996 * 109.47543 * 30.00220 * 4 3 2 31 31 H 1.09006 * 109.46981 * 150.00551 * 4 3 2 32 32 H 0.97000 * 119.99873 * 0.02562 * 7 5 3 33 33 H 1.09004 * 117.50437 * 145.04073 * 10 8 7 34 34 H 1.09002 * 117.50653 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.58994 * 29.76027 * 12 11 10 36 36 H 1.09008 * 109.58901 * 150.19321 * 12 11 10 37 37 H 1.09004 * 109.58141 * 188.89570 * 13 12 11 38 38 H 1.08992 * 109.58091 * 68.49205 * 13 12 11 39 39 H 0.97001 * 119.99452 * 179.97438 * 18 17 15 40 40 H 1.08992 * 109.58270 * 183.30051 * 23 14 13 41 41 H 1.08997 * 109.57770 * 62.88976 * 23 14 13 42 42 H 1.08999 * 109.58923 * 209.80490 * 24 11 10 43 43 H 1.08999 * 109.58976 * 330.23627 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.2203 2.4257 0.0015 7 7 2.1103 3.5929 0.0011 8 6 1.3779 4.8617 0.0011 9 1 0.3023 4.7838 0.1599 10 6 1.8760 5.9653 -0.9347 11 6 2.0897 6.0879 0.5737 12 6 1.2424 7.1151 1.3307 13 6 1.9898 8.4541 1.3486 14 7 3.3576 8.2266 1.8320 15 6 3.8278 8.9044 2.9250 16 1 4.5904 8.4614 3.5482 17 6 3.3239 10.1609 3.2320 18 7 3.4462 10.6388 4.4523 19 14 2.4726 11.1736 1.9132 20 1 1.0072 10.9424 1.9806 21 1 2.7571 12.6142 2.1346 22 1 2.9765 10.7692 0.5762 23 6 4.2154 7.2634 1.1298 24 6 3.5132 5.9003 1.1077 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.0469 -0.9353 0.0004 29 1 4.0419 1.1520 1.0284 30 1 4.0425 0.2617 -0.5129 31 1 4.0425 2.0417 -0.5133 32 1 3.0803 3.5929 0.0007 33 1 1.1281 6.6135 -1.3916 34 1 2.7484 5.7472 -1.5507 35 1 0.2830 7.2389 0.8285 36 1 1.0807 6.7732 2.3531 37 1 1.4781 9.1492 2.0143 38 1 2.0226 8.8676 0.3407 39 1 3.0944 11.5170 4.6667 40 1 5.1684 7.1749 1.6514 41 1 4.3860 7.6031 0.1083 42 1 3.4738 5.4930 2.1179 43 1 4.0605 5.2179 0.4574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266369516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:02 Heat of formation + Delta-G solvation = 4.291330 kcal Electronic energy + Delta-G solvation = -22087.793523 eV Core-core repulsion = 18940.768451 eV Total energy + Delta-G solvation = -3147.025072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29503 -40.00133 -37.39827 -35.88318 -34.63187 -33.61978 -32.06012 -30.90924 -30.08568 -26.07213 -25.95411 -24.58460 -24.31054 -22.93370 -21.95061 -20.39614 -19.85359 -18.42787 -17.55378 -17.38160 -16.75199 -16.11842 -15.96991 -15.62926 -15.33683 -15.10067 -14.94480 -14.50248 -14.39757 -14.08331 -13.94238 -13.83222 -13.66373 -13.51975 -13.38661 -12.94385 -12.82192 -12.58651 -12.41205 -12.33946 -12.25154 -12.13123 -11.62738 -11.47184 -11.32344 -10.83402 -10.70654 -10.53951 -10.06231 -9.56716 -8.86022 -8.16760 -5.47928 0.43241 1.30241 1.41063 1.50769 2.12154 2.20757 2.42047 2.93155 3.06840 3.36027 3.69722 3.76121 3.79822 3.91867 3.96424 4.01725 4.36483 4.38490 4.46333 4.52681 4.60803 4.69140 4.78289 4.79595 4.83958 4.87382 4.89704 4.91638 4.95389 4.99358 5.03921 5.10478 5.19868 5.26142 5.29351 5.48432 5.50574 5.57919 5.67519 5.88511 6.13554 6.56940 6.94251 7.24244 7.64500 8.04965 9.03355 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034273 B = 0.003833 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.782681 B = 7303.800535 C = 7559.273580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.062 4.062 3 C -0.210 4.210 4 C -0.112 4.112 5 C 0.542 3.458 6 O -0.577 6.577 7 N -0.687 5.687 8 C 0.083 3.917 9 H 0.118 0.882 10 C -0.164 4.164 11 C -0.120 4.120 12 C -0.092 4.092 13 C 0.128 3.872 14 N -0.619 5.619 15 C -0.249 4.249 16 H 0.051 0.949 17 C -0.037 4.037 18 N -0.959 5.959 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.312 1.312 22 H -0.257 1.257 23 C 0.147 3.853 24 C -0.086 4.086 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.159 0.841 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.411 0.589 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.051 0.949 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 -20.997 -14.099 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.082 4.082 3 C -0.213 4.213 4 C -0.169 4.169 5 C 0.333 3.667 6 O -0.459 6.459 7 N -0.337 5.337 8 C -0.023 4.023 9 H 0.136 0.864 10 C -0.202 4.202 11 C -0.122 4.122 12 C -0.131 4.131 13 C 0.003 3.997 14 N -0.343 5.343 15 C -0.378 4.378 16 H 0.068 0.932 17 C -0.231 4.231 18 N -0.605 5.605 19 Si 0.777 3.223 20 H -0.204 1.204 21 H -0.241 1.241 22 H -0.181 1.181 23 C 0.022 3.978 24 C -0.125 4.125 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.177 0.823 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.041 -20.886 -14.014 25.235 hybrid contribution -0.046 1.241 0.203 1.258 sum -2.087 -19.645 -13.812 24.105 Atomic orbital electron populations 1.20976 0.92961 1.01716 1.02239 1.23937 0.96611 0.97783 0.89819 1.21611 0.97924 0.91751 1.09997 1.20821 0.88593 1.04163 1.03326 1.19019 0.87126 0.85100 0.75459 1.90757 1.15270 1.88090 1.51749 1.45308 1.10498 1.04047 1.73873 1.21638 0.96263 0.79690 1.04750 0.86373 1.23661 1.04082 1.00485 0.92016 1.21787 0.96876 0.97435 0.96068 1.21531 0.97504 0.94649 0.99462 1.21306 0.85316 0.96079 0.97005 1.44419 1.09551 1.47730 1.32635 1.18892 1.20691 0.97236 1.01027 0.93153 1.25938 1.01000 0.98174 0.98018 1.69979 1.51343 1.19526 1.19652 0.85874 0.78230 0.76850 0.81393 1.20449 1.24118 1.18128 1.21067 0.92940 0.88409 0.95339 1.21455 0.92882 0.97756 1.00362 0.91966 0.90704 0.92418 0.82337 0.90495 0.89109 0.91256 0.74990 0.87518 0.86907 0.90330 0.93267 0.93681 0.94338 0.93021 0.92458 0.94161 0.93035 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.45 71.23 0.60 -1.69 16 2 C -0.06 -0.94 9.95 24.52 0.24 -0.70 16 3 C -0.21 -3.68 6.00 -18.70 -0.11 -3.80 16 4 C -0.11 -1.22 9.61 71.24 0.68 -0.53 16 5 C 0.54 13.43 7.72 86.57 0.67 14.10 16 6 O -0.58 -18.25 12.64 -4.07 -0.05 -18.31 16 7 N -0.69 -15.27 5.29 -446.23 -2.36 -17.63 16 8 C 0.08 2.13 6.14 44.97 0.28 2.40 16 9 H 0.12 3.44 7.40 -2.38 -0.02 3.42 16 10 C -0.16 -3.76 9.86 30.55 0.30 -3.46 16 11 C -0.12 -3.42 1.94 -52.14 -0.10 -3.52 16 12 C -0.09 -3.18 5.83 30.77 0.18 -3.00 16 13 C 0.13 5.39 4.23 86.43 0.37 5.76 16 14 N -0.62 -28.78 2.71 -698.89 -1.89 -30.67 16 15 C -0.25 -14.16 10.00 84.04 0.84 -13.32 16 16 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 17 C -0.04 -2.17 5.23 84.86 0.44 -1.72 16 18 N -0.96 -60.99 13.97 21.65 0.30 -60.69 16 19 Si 0.95 46.91 24.40 68.60 1.67 48.58 16 20 H -0.28 -13.09 6.66 99.48 0.66 -12.43 16 21 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 22 H -0.26 -12.02 6.65 99.48 0.66 -11.36 16 23 C 0.15 5.35 6.52 86.43 0.56 5.92 16 24 C -0.09 -2.46 5.37 30.77 0.17 -2.30 16 25 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 28 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16 31 H 0.07 0.67 6.71 -2.38 -0.02 0.65 16 32 H 0.41 7.15 5.22 -92.71 -0.48 6.66 16 33 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.33 8.10 -2.39 -0.02 2.32 16 36 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.05 2.14 4.31 -2.38 -0.01 2.13 16 38 H 0.04 1.54 7.27 -2.39 -0.02 1.52 16 39 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.06 2.12 7.92 -2.39 -0.02 2.11 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.09 1.85 6.75 -2.39 -0.02 1.83 16 Total: -1.00 -72.25 333.87 3.22 -69.03 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.42 Total: 15.57 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.12 Total: -5.88 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -3.95 Total: -108.99 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.67 Total: 48.58 kcal Total: -72.25 3.22 -69.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266369516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.320 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds