Wall clock time and date at job start Tue Mar 31 2020 00:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32987 * 120.00551 * 2 1 4 4 C 1.50705 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.47100 * 120.00512 * 180.02562 * 3 2 1 6 6 O 1.21615 * 119.99884 * 359.97438 * 5 3 2 7 7 N 1.34775 * 120.00188 * 180.02562 * 5 3 2 8 8 C 1.46499 * 120.00136 * 179.97438 * 7 5 3 9 9 H 1.09000 * 115.56284 * 9.29775 * 8 7 5 10 10 C 1.53030 * 117.50552 * 223.58220 * 8 7 5 11 11 C 1.52819 * 117.50144 * 154.99782 * 8 7 5 12 12 C 1.53180 * 117.71545 * 359.86504 * 11 8 7 13 13 C 1.53349 * 108.76892 * 158.87389 * 12 11 8 14 14 N 1.46844 * 108.81070 * 51.30871 * 13 12 11 15 15 C 1.36940 * 120.37606 * 123.11293 * 14 13 12 16 16 H 1.07998 * 119.99252 * 210.70125 * 15 14 13 17 17 C 1.38807 * 120.00375 * 30.69922 * 15 14 13 18 18 N 1.31622 * 120.00154 * 199.02082 * 17 15 14 19 19 Si 1.86801 * 119.99999 * 19.02201 * 17 15 14 20 20 H 1.48498 * 109.47059 * 272.96128 * 19 17 15 21 21 H 1.48503 * 109.47024 * 32.96369 * 19 17 15 22 22 H 1.48496 * 109.47060 * 152.95887 * 19 17 15 23 23 C 1.46839 * 119.24260 * 303.37541 * 14 13 12 24 24 C 1.52875 * 109.07233 * 56.58591 * 23 14 13 25 25 H 1.09005 * 109.46647 * 300.00094 * 1 2 3 26 26 H 1.08992 * 109.47033 * 59.99770 * 1 2 3 27 27 H 1.09002 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99876 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47313 * 270.00496 * 4 3 2 30 30 H 1.09008 * 109.46962 * 30.00091 * 4 3 2 31 31 H 1.09000 * 109.47191 * 149.99621 * 4 3 2 32 32 H 0.97008 * 119.99843 * 359.97438 * 7 5 3 33 33 H 1.09005 * 117.50066 * 145.04483 * 10 8 7 34 34 H 1.09004 * 117.52941 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.59110 * 39.09114 * 12 11 8 36 36 H 1.08998 * 109.58959 * 278.65906 * 12 11 8 37 37 H 1.08999 * 109.58446 * 291.51445 * 13 12 11 38 38 H 1.08997 * 109.58512 * 171.10922 * 13 12 11 39 39 H 0.96999 * 120.00083 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.58204 * 176.42127 * 23 14 13 41 41 H 1.09000 * 109.58060 * 296.82863 * 23 14 13 42 42 H 1.08998 * 109.66431 * 189.04710 * 24 23 14 43 43 H 1.08996 * 109.44712 * 68.65348 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 1.4186 2.4568 0.0006 5 6 3.6430 1.1516 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3169 2.3188 0.0000 8 6 5.7819 2.3188 0.0000 9 1 6.2523 1.3484 -0.1593 10 6 6.4887 3.3016 0.9361 11 6 6.4876 3.5475 -0.5724 12 6 5.6138 4.6866 -1.1065 13 6 6.4436 5.9760 -1.1293 14 7 7.7064 5.7140 -1.8315 15 6 8.0587 6.4600 -2.9244 16 1 8.6550 6.0192 -3.7096 17 6 7.6495 7.7827 -3.0231 18 7 7.6495 8.3861 -4.1929 19 14 7.0989 8.7065 -1.4958 20 1 5.6506 8.4693 -1.2691 21 1 7.8693 8.2246 -0.3212 22 1 7.3392 10.1599 -1.6828 23 6 8.5843 4.6391 -1.3518 24 6 7.8007 3.3266 -1.3297 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 2.0470 -0.9353 -0.0004 29 1 1.2365 2.7717 -1.0269 30 1 0.4663 2.3264 0.5148 31 1 2.0079 3.2163 0.5144 32 1 3.8319 3.1589 0.0003 33 1 7.4240 2.9777 1.3927 34 1 5.8640 3.9487 1.5519 35 1 4.7494 4.8199 -0.4561 36 1 5.2805 4.4487 -2.1166 37 1 6.6528 6.2939 -0.1080 38 1 5.8908 6.7571 -1.6511 39 1 7.3638 9.3105 -4.2618 40 1 9.4398 4.5405 -2.0200 41 1 8.9298 4.8717 -0.3445 42 1 8.3874 2.5575 -0.8274 43 1 7.5851 3.0154 -2.3518 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266369519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:13 Heat of formation + Delta-G solvation = 20.524973 kcal Electronic energy + Delta-G solvation = -21996.284715 eV Core-core repulsion = 18849.963586 eV Total energy + Delta-G solvation = -3146.321128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17426 -38.70449 -35.92218 -35.54679 -33.24074 -31.70840 -30.57518 -29.59401 -28.55356 -26.44811 -24.18494 -23.20228 -22.85217 -21.46437 -20.54207 -18.88706 -18.27943 -17.23303 -16.63662 -16.18120 -15.34402 -15.07685 -14.74870 -14.18370 -14.08944 -13.83976 -13.79095 -13.62642 -13.03176 -12.87037 -12.84475 -12.60558 -12.42549 -12.32168 -11.99344 -11.95842 -11.72643 -11.54359 -11.19257 -10.76173 -10.59496 -10.40503 -10.03960 -9.95272 -9.76552 -9.51676 -9.45716 -9.30618 -8.71551 -8.43207 -6.91602 -5.95837 -3.34184 1.18235 3.07534 3.14508 3.28198 3.46419 3.50264 4.07254 4.50534 4.51782 4.64607 4.81902 4.89129 4.94246 4.97283 4.99154 5.14347 5.18825 5.31074 5.36465 5.40386 5.42347 5.54349 5.67128 5.75562 5.85791 5.92103 5.98526 6.06078 6.15517 6.17999 6.27744 6.31703 6.37741 6.42884 6.54637 6.62525 6.69072 6.72314 6.95865 7.48835 8.00121 8.18321 8.34350 8.95650 9.71752 10.11057 11.20417 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.004130 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.271194 B = 6778.008808 C = 7366.303934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.189 4.189 4 C -0.120 4.120 5 C 0.555 3.445 6 O -0.549 6.549 7 N -0.692 5.692 8 C 0.074 3.926 9 H 0.134 0.866 10 C -0.184 4.184 11 C -0.102 4.102 12 C -0.098 4.098 13 C 0.130 3.870 14 N -0.604 5.604 15 C -0.260 4.260 16 H 0.084 0.916 17 C 0.024 3.976 18 N -0.910 5.910 19 Si 0.886 3.114 20 H -0.287 1.287 21 H -0.272 1.272 22 H -0.304 1.304 23 C 0.152 3.848 24 C -0.099 4.099 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.402 0.598 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.263 0.737 40 H 0.065 0.935 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 -12.888 10.692 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 C -0.192 4.192 4 C -0.177 4.177 5 C 0.344 3.656 6 O -0.428 6.428 7 N -0.342 5.342 8 C -0.031 4.031 9 H 0.151 0.849 10 C -0.223 4.223 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.004 3.996 14 N -0.328 5.328 15 C -0.389 4.389 16 H 0.101 0.899 17 C -0.175 4.175 18 N -0.552 5.552 19 Si 0.716 3.284 20 H -0.215 1.215 21 H -0.197 1.197 22 H -0.232 1.232 23 C 0.026 3.974 24 C -0.138 4.138 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.239 0.761 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.010 -13.456 10.581 20.911 hybrid contribution -0.555 1.097 0.866 1.504 sum -12.565 -12.359 11.448 21.016 Atomic orbital electron populations 1.20988 0.92114 1.03007 1.02613 1.23553 0.96226 0.97910 0.91946 1.21431 0.92630 0.96883 1.08293 1.20852 1.00064 0.93955 1.02813 1.18368 0.87685 0.83600 0.75915 1.90761 1.70119 1.31268 1.50643 1.45362 1.06201 1.08669 1.73924 1.21849 0.79417 0.96745 1.05124 0.84883 1.23566 1.02410 1.02715 0.93608 1.21930 0.98199 0.95859 0.94390 1.21622 0.96176 0.95525 1.00374 1.21343 0.87681 0.94952 0.95625 1.44266 1.16871 1.38067 1.33556 1.18933 1.32618 0.91770 0.95570 0.89860 1.25359 0.99268 0.96410 0.96447 1.69826 1.50125 1.12796 1.22501 0.86947 0.77843 0.78478 0.85109 1.21467 1.19740 1.23182 1.20795 0.92550 0.86746 0.97292 1.21598 0.93437 0.99168 0.99580 0.90687 0.90683 0.91433 0.85616 0.90631 0.90832 0.91813 0.76150 0.88215 0.88970 0.93458 0.91028 0.95779 0.90706 0.92757 0.91686 0.95856 0.92362 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 8.91 36.00 0.32 -0.48 16 2 C -0.08 -0.72 9.84 -36.13 -0.36 -1.07 16 3 C -0.19 -2.01 6.00 -102.85 -0.62 -2.62 16 4 C -0.12 -0.94 9.14 36.01 0.33 -0.61 16 5 C 0.56 7.75 7.75 -12.67 -0.10 7.66 16 6 O -0.55 -9.51 15.79 5.26 0.08 -9.43 16 7 N -0.69 -9.02 5.29 -55.07 -0.29 -9.31 16 8 C 0.07 1.06 6.14 -68.01 -0.42 0.64 16 9 H 0.13 2.02 7.40 -51.93 -0.38 1.64 16 10 C -0.18 -2.50 9.86 -26.80 -0.26 -2.76 16 11 C -0.10 -1.59 1.94 -154.50 -0.30 -1.89 16 12 C -0.10 -1.67 5.37 -26.46 -0.14 -1.81 16 13 C 0.13 2.76 4.23 -3.67 -0.02 2.74 16 14 N -0.60 -14.17 2.68 -172.55 -0.46 -14.64 16 15 C -0.26 -7.23 9.99 -15.06 -0.15 -7.38 16 16 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 17 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 18 N -0.91 -27.76 13.97 55.49 0.78 -26.98 16 19 Si 0.89 22.19 24.44 -169.99 -4.15 18.03 16 20 H -0.29 -6.81 6.39 56.52 0.36 -6.45 16 21 H -0.27 -6.77 7.02 56.52 0.40 -6.37 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 C 0.15 2.97 6.48 -3.92 -0.03 2.94 16 24 C -0.10 -1.62 5.81 -26.70 -0.16 -1.77 16 25 H 0.07 0.39 7.40 -51.93 -0.38 0.01 16 26 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.13 1.31 7.49 -52.49 -0.39 0.92 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.45 6.49 -51.92 -0.34 0.12 16 31 H 0.06 0.48 6.70 -51.93 -0.35 0.13 16 32 H 0.40 4.53 5.22 -40.82 -0.21 4.32 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.67 6.75 -51.93 -0.35 0.32 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.51 7.44 -51.93 -0.39 0.12 16 38 H 0.07 1.75 4.36 -51.93 -0.23 1.52 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.06 1.27 7.92 -51.93 -0.41 0.86 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -32.47 336.13 -7.80 -40.28 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.84 Total: 2.82 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.98 Total: -5.83 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.02 Total: -50.94 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.15 Total: 18.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.47 -7.80 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266369519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.801 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds