Wall clock time and date at job start Tue Mar 31 2020 00:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32987 * 120.00551 * 2 1 4 4 C 1.50705 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.47100 * 120.00512 * 180.02562 * 3 2 1 6 6 O 1.21615 * 119.99884 * 359.97438 * 5 3 2 7 7 N 1.34775 * 120.00188 * 180.02562 * 5 3 2 8 8 C 1.46499 * 120.00136 * 179.97438 * 7 5 3 9 9 H 1.09000 * 115.56284 * 9.29775 * 8 7 5 10 10 C 1.53030 * 117.50552 * 223.58220 * 8 7 5 11 11 C 1.52819 * 117.50144 * 154.99782 * 8 7 5 12 12 C 1.53180 * 117.71545 * 359.86504 * 11 8 7 13 13 C 1.53349 * 108.76892 * 158.87389 * 12 11 8 14 14 N 1.46844 * 108.81070 * 51.30871 * 13 12 11 15 15 C 1.36940 * 120.37606 * 123.11293 * 14 13 12 16 16 H 1.07998 * 119.99252 * 210.70125 * 15 14 13 17 17 C 1.38807 * 120.00375 * 30.69922 * 15 14 13 18 18 N 1.31622 * 120.00154 * 199.02082 * 17 15 14 19 19 Si 1.86801 * 119.99999 * 19.02201 * 17 15 14 20 20 H 1.48498 * 109.47059 * 272.96128 * 19 17 15 21 21 H 1.48503 * 109.47024 * 32.96369 * 19 17 15 22 22 H 1.48496 * 109.47060 * 152.95887 * 19 17 15 23 23 C 1.46839 * 119.24260 * 303.37541 * 14 13 12 24 24 C 1.52875 * 109.07233 * 56.58591 * 23 14 13 25 25 H 1.09005 * 109.46647 * 300.00094 * 1 2 3 26 26 H 1.08992 * 109.47033 * 59.99770 * 1 2 3 27 27 H 1.09002 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99876 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47313 * 270.00496 * 4 3 2 30 30 H 1.09008 * 109.46962 * 30.00091 * 4 3 2 31 31 H 1.09000 * 109.47191 * 149.99621 * 4 3 2 32 32 H 0.97008 * 119.99843 * 359.97438 * 7 5 3 33 33 H 1.09005 * 117.50066 * 145.04483 * 10 8 7 34 34 H 1.09004 * 117.52941 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.59110 * 39.09114 * 12 11 8 36 36 H 1.08998 * 109.58959 * 278.65906 * 12 11 8 37 37 H 1.08999 * 109.58446 * 291.51445 * 13 12 11 38 38 H 1.08997 * 109.58512 * 171.10922 * 13 12 11 39 39 H 0.96999 * 120.00083 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.58204 * 176.42127 * 23 14 13 41 41 H 1.09000 * 109.58060 * 296.82863 * 23 14 13 42 42 H 1.08998 * 109.66431 * 189.04710 * 24 23 14 43 43 H 1.08996 * 109.44712 * 68.65348 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 1.4186 2.4568 0.0006 5 6 3.6430 1.1516 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3169 2.3188 0.0000 8 6 5.7819 2.3188 0.0000 9 1 6.2523 1.3484 -0.1593 10 6 6.4887 3.3016 0.9361 11 6 6.4876 3.5475 -0.5724 12 6 5.6138 4.6866 -1.1065 13 6 6.4436 5.9760 -1.1293 14 7 7.7064 5.7140 -1.8315 15 6 8.0587 6.4600 -2.9244 16 1 8.6550 6.0192 -3.7096 17 6 7.6495 7.7827 -3.0231 18 7 7.6495 8.3861 -4.1929 19 14 7.0989 8.7065 -1.4958 20 1 5.6506 8.4693 -1.2691 21 1 7.8693 8.2246 -0.3212 22 1 7.3392 10.1599 -1.6828 23 6 8.5843 4.6391 -1.3518 24 6 7.8007 3.3266 -1.3297 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 2.0470 -0.9353 -0.0004 29 1 1.2365 2.7717 -1.0269 30 1 0.4663 2.3264 0.5148 31 1 2.0079 3.2163 0.5144 32 1 3.8319 3.1589 0.0003 33 1 7.4240 2.9777 1.3927 34 1 5.8640 3.9487 1.5519 35 1 4.7494 4.8199 -0.4561 36 1 5.2805 4.4487 -2.1166 37 1 6.6528 6.2939 -0.1080 38 1 5.8908 6.7571 -1.6511 39 1 7.3638 9.3105 -4.2618 40 1 9.4398 4.5405 -2.0200 41 1 8.9298 4.8717 -0.3445 42 1 8.3874 2.5575 -0.8274 43 1 7.5851 3.0154 -2.3518 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266369519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:12 Heat of formation + Delta-G solvation = -0.507962 kcal Electronic energy + Delta-G solvation = -21997.196771 eV Core-core repulsion = 18849.963586 eV Total energy + Delta-G solvation = -3147.233185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28862 -39.96168 -37.36708 -36.44872 -34.61138 -33.54783 -32.08653 -30.58709 -29.78775 -27.11825 -26.03292 -24.59512 -23.94041 -22.98650 -21.76272 -20.07768 -19.56151 -18.44286 -18.00313 -17.40823 -17.16021 -16.06831 -15.96068 -15.76590 -15.47375 -15.33594 -14.56528 -14.44541 -14.38288 -14.33399 -14.21645 -13.67501 -13.49696 -13.37684 -13.34232 -13.03903 -12.80329 -12.64215 -12.39748 -12.29904 -12.17536 -12.10698 -11.65217 -11.51266 -11.30684 -11.06924 -10.77051 -10.61482 -10.06708 -9.64661 -8.82885 -8.16029 -5.50810 0.35913 1.29907 1.42910 1.52805 2.07188 2.16983 2.42822 2.91604 3.08481 3.35595 3.66119 3.71487 3.79122 3.90844 3.98396 4.00868 4.28772 4.36705 4.43994 4.49578 4.59190 4.68174 4.72903 4.78820 4.81454 4.85560 4.88735 4.92927 4.95652 4.96853 5.05759 5.11601 5.15295 5.20230 5.29342 5.44335 5.49737 5.50922 5.66051 5.90514 6.14667 6.49624 6.95539 7.16231 7.64301 8.05310 9.04335 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.004130 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.271194 B = 6778.008808 C = 7366.303934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.067 4.067 3 C -0.208 4.208 4 C -0.116 4.116 5 C 0.548 3.452 6 O -0.592 6.592 7 N -0.686 5.686 8 C 0.080 3.920 9 H 0.122 0.878 10 C -0.163 4.163 11 C -0.120 4.120 12 C -0.088 4.088 13 C 0.124 3.876 14 N -0.619 5.619 15 C -0.252 4.252 16 H 0.045 0.955 17 C -0.035 4.035 18 N -0.960 5.960 19 Si 0.952 3.048 20 H -0.264 1.264 21 H -0.264 1.264 22 H -0.312 1.312 23 C 0.148 3.852 24 C -0.090 4.090 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.412 0.588 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.262 0.738 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.086 0.914 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.596 -13.424 13.618 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.087 4.087 3 C -0.211 4.211 4 C -0.173 4.173 5 C 0.339 3.661 6 O -0.475 6.475 7 N -0.335 5.335 8 C -0.027 4.027 9 H 0.140 0.860 10 C -0.201 4.201 11 C -0.121 4.121 12 C -0.127 4.127 13 C 0.000 4.000 14 N -0.344 5.344 15 C -0.382 4.382 16 H 0.062 0.938 17 C -0.230 4.230 18 N -0.606 5.606 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.189 1.189 22 H -0.241 1.241 23 C 0.023 3.977 24 C -0.129 4.129 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.250 0.750 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.105 0.895 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.186 -14.009 13.544 24.102 hybrid contribution 0.155 1.116 -0.101 1.131 sum -14.031 -12.893 13.442 23.319 Atomic orbital electron populations 1.21054 0.89334 1.04205 1.03750 1.23798 0.98173 0.96871 0.89887 1.21485 0.90759 0.98696 1.10154 1.20887 1.00655 0.92349 1.03391 1.18988 0.89169 0.83037 0.74894 1.90734 1.71263 1.32673 1.52802 1.45320 1.05752 1.09050 1.73429 1.21701 0.80140 0.95759 1.05063 0.85988 1.23671 1.02985 1.01485 0.91974 1.21792 0.97755 0.96344 0.96249 1.21451 0.96902 0.93923 1.00415 1.21397 0.86901 0.96468 0.95267 1.44398 1.18674 1.38433 1.32868 1.18848 1.31151 0.92226 0.95967 0.93761 1.26023 1.00485 0.97298 0.99186 1.69970 1.52757 1.13082 1.24797 0.85856 0.78807 0.76138 0.81120 1.18979 1.18892 1.24125 1.20939 0.92229 0.87023 0.97469 1.21452 0.94223 0.97968 0.99232 0.89052 0.89604 0.90393 0.87400 0.90318 0.88766 0.91408 0.74985 0.86742 0.87453 0.90000 0.92935 0.94436 0.93031 0.92932 0.92883 0.94225 0.89518 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.91 71.24 0.63 -0.53 16 2 C -0.07 -1.15 9.84 24.52 0.24 -0.91 16 3 C -0.21 -4.01 6.00 -18.70 -0.11 -4.12 16 4 C -0.12 -1.46 9.14 71.24 0.65 -0.81 16 5 C 0.55 14.64 7.75 86.57 0.67 15.31 16 6 O -0.59 -20.44 15.79 -4.08 -0.06 -20.51 16 7 N -0.69 -16.36 5.29 -446.38 -2.36 -18.72 16 8 C 0.08 2.08 6.14 44.94 0.28 2.35 16 9 H 0.12 3.53 7.40 -2.39 -0.02 3.51 16 10 C -0.16 -3.76 9.86 30.55 0.30 -3.46 16 11 C -0.12 -3.44 1.94 -52.17 -0.10 -3.54 16 12 C -0.09 -2.80 5.37 30.77 0.17 -2.64 16 13 C 0.12 5.05 4.23 86.43 0.37 5.41 16 14 N -0.62 -28.87 2.68 -699.84 -1.87 -30.75 16 15 C -0.25 -14.41 9.99 84.03 0.84 -13.58 16 16 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 17 C -0.04 -2.06 5.24 84.86 0.44 -1.62 16 18 N -0.96 -60.61 13.97 21.65 0.30 -60.31 16 19 Si 0.95 45.90 24.44 68.60 1.68 47.58 16 20 H -0.26 -11.61 6.39 99.48 0.64 -10.98 16 21 H -0.26 -12.26 7.02 99.48 0.70 -11.56 16 22 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 23 C 0.15 5.65 6.48 86.27 0.56 6.21 16 24 C -0.09 -2.83 5.81 30.61 0.18 -2.65 16 25 H 0.09 0.60 7.40 -2.38 -0.02 0.58 16 26 H 0.09 0.66 8.10 -2.39 -0.02 0.64 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 2.21 7.49 -2.91 -0.02 2.19 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.79 6.49 -2.38 -0.02 0.77 16 31 H 0.07 0.78 6.70 -2.39 -0.02 0.77 16 32 H 0.41 8.02 5.22 -92.70 -0.48 7.54 16 33 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 2.03 6.75 -2.39 -0.02 2.01 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.44 7.44 -2.39 -0.02 1.42 16 38 H 0.05 2.32 4.36 -2.39 -0.01 2.31 16 39 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -73.07 336.13 3.23 -69.85 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.44 Total: 17.41 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.11 Total: -4.56 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.93 Total: -109.77 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.06 Total: -20.51 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.68 Total: 47.58 kcal Total: -73.07 3.23 -69.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266369519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.338 kcal (2) G-P(sol) polarization free energy of solvation -73.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds