Wall clock time and date at job start Tue Mar 31 2020 00:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32996 * 120.00070 * 2 1 4 4 C 1.47104 * 119.99943 * 353.51271 * 3 2 1 5 5 O 1.21611 * 120.00098 * 353.31469 * 4 3 2 6 6 N 1.34776 * 120.00062 * 173.59800 * 4 3 2 7 7 C 1.46502 * 120.00262 * 179.72251 * 6 4 3 8 8 C 1.52996 * 109.46949 * 179.97438 * 7 6 4 9 9 N 1.46502 * 109.46949 * 179.97438 * 8 7 6 10 10 C 1.36937 * 120.00260 * 270.00335 * 9 8 7 11 11 H 1.08001 * 120.00563 * 144.43870 * 10 9 8 12 12 C 1.38821 * 119.99688 * 324.44186 * 10 9 8 13 13 N 1.31614 * 119.99674 * 338.42641 * 12 10 9 14 14 Si 1.86797 * 119.99955 * 158.42911 * 12 10 9 15 15 H 1.48496 * 109.47469 * 59.99586 * 14 12 10 16 16 H 1.48499 * 109.46910 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47109 * 299.99743 * 14 12 10 18 18 C 1.46498 * 120.00202 * 89.99793 * 9 8 7 19 19 C 1.52997 * 117.50304 * 183.79418 * 18 9 8 20 20 C 1.52998 * 117.49864 * 115.13356 * 18 9 8 21 21 C 1.50697 * 119.99910 * 180.02562 * 2 1 3 22 22 C 1.53001 * 117.49970 * 8.61589 * 21 2 1 23 23 C 1.53000 * 117.49545 * 299.99310 * 21 2 1 24 24 H 1.08993 * 109.47318 * 84.51108 * 1 2 3 25 25 H 1.08990 * 109.46881 * 204.51950 * 1 2 3 26 26 H 1.09004 * 109.46724 * 324.51827 * 1 2 3 27 27 H 1.08002 * 120.00246 * 173.50637 * 3 2 1 28 28 H 0.97008 * 119.99719 * 359.71913 * 6 4 3 29 29 H 1.08997 * 109.46752 * 300.00214 * 7 6 4 30 30 H 1.08999 * 109.46651 * 59.99985 * 7 6 4 31 31 H 1.08997 * 109.47770 * 299.99837 * 8 7 6 32 32 H 1.08999 * 109.47255 * 60.00602 * 8 7 6 33 33 H 0.97006 * 119.99729 * 185.03169 * 13 12 10 34 34 H 1.08999 * 115.55091 * 329.46816 * 18 9 8 35 35 H 1.08999 * 117.49516 * 359.97438 * 19 18 9 36 36 H 1.09000 * 117.50261 * 145.02309 * 19 18 9 37 37 H 1.09009 * 117.50236 * 214.98497 * 20 18 9 38 38 H 1.08999 * 117.49902 * 359.97438 * 20 18 9 39 39 H 1.09000 * 115.55016 * 154.32589 * 21 2 1 40 40 H 1.08994 * 117.49776 * 0.02562 * 22 21 2 41 41 H 1.08994 * 117.49579 * 145.02709 * 22 21 2 42 42 H 1.09007 * 117.49991 * 214.98201 * 23 21 2 43 43 H 1.08996 * 117.49997 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4436 2.4217 -0.1439 5 8 0.2515 2.4150 -0.3843 6 7 2.0984 3.5926 -0.0150 7 6 1.3742 4.8573 -0.1644 8 6 2.3430 6.0256 0.0285 9 7 1.6189 7.2903 -0.1215 10 6 1.5156 7.8782 -1.3539 11 1 0.6134 8.4053 -1.6270 12 6 2.5706 7.7965 -2.2525 13 7 3.7882 7.5510 -1.8172 14 14 2.2622 8.0352 -4.0793 15 1 1.6956 9.3878 -4.3131 16 1 3.5427 7.9007 -4.8192 17 1 1.3031 7.0073 -4.5578 18 6 1.0052 7.9260 1.0470 19 6 0.1879 9.1978 0.8116 20 6 1.5596 9.2829 1.4856 21 6 2.2605 -1.3051 -0.0006 22 6 1.4516 -2.5877 -0.2045 23 6 2.0261 -2.2566 1.1744 24 1 -0.3633 0.0983 -1.0229 25 1 -0.3633 -0.9349 0.4265 26 1 -0.3633 0.8369 0.5965 27 1 3.2468 1.1548 0.1058 28 1 3.0493 3.5979 0.1767 29 1 0.9355 4.9092 -1.1608 30 1 0.5838 4.9138 0.5840 31 1 2.7814 5.9735 1.0250 32 1 3.1337 5.9692 -0.7197 33 1 4.5363 7.5661 -2.4346 34 1 0.6640 7.2457 1.8273 35 1 0.1072 9.5617 -0.2127 36 1 -0.6908 9.3544 1.4372 37 1 1.5828 9.4954 2.5545 38 1 2.3812 9.7023 0.9051 39 1 3.2631 -1.2689 -0.4266 40 1 0.3746 -2.4875 -0.3386 41 1 1.9221 -3.3956 -0.7648 42 1 2.8745 -2.8467 1.5212 43 1 1.3273 -1.9384 1.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266583560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:19 Heat of formation + Delta-G solvation = 34.289757 kcal Electronic energy + Delta-G solvation = -21271.805764 eV Core-core repulsion = 18126.081521 eV Total energy + Delta-G solvation = -3145.724243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86301 -39.00678 -38.66813 -36.33764 -34.97395 -34.08438 -32.68895 -29.90882 -28.33580 -26.39774 -24.91983 -23.33500 -23.18609 -22.86549 -21.64208 -21.45832 -19.50805 -18.36862 -17.74992 -17.28617 -17.18315 -16.61301 -16.35505 -15.97255 -15.71260 -15.43282 -14.72381 -14.49561 -14.41530 -13.88577 -13.77867 -13.76502 -13.25956 -12.91082 -12.84208 -12.66755 -12.50726 -12.45169 -12.21472 -12.13140 -11.90679 -11.83005 -11.70265 -11.38079 -11.32294 -10.95051 -10.59464 -10.52891 -10.13407 -9.69359 -8.50277 -7.90781 -5.47261 0.36099 1.41632 1.45739 1.51281 2.26254 2.30744 2.49039 3.02758 3.12030 3.38714 3.50372 3.68395 3.88607 3.96781 4.14633 4.16376 4.28732 4.31642 4.36246 4.42017 4.51813 4.60502 4.68489 4.75964 4.79456 4.83348 4.93564 5.00813 5.03251 5.10818 5.15904 5.22572 5.27315 5.32993 5.49449 5.54165 5.54794 5.58564 5.66399 5.77503 6.43258 6.69996 7.10405 7.34376 7.79717 8.29442 9.07587 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.003619 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.916345 B = 7734.740449 C = 8475.883365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.003 3.997 3 C -0.237 4.237 4 C 0.532 3.468 5 O -0.586 6.586 6 N -0.712 5.712 7 C 0.123 3.877 8 C 0.145 3.855 9 N -0.566 5.566 10 C -0.269 4.269 11 H 0.058 0.942 12 C -0.028 4.028 13 N -0.912 5.912 14 Si 0.953 3.047 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.286 1.286 18 C 0.098 3.902 19 C -0.184 4.184 20 C -0.211 4.211 21 C -0.147 4.147 22 C -0.169 4.169 23 C -0.157 4.157 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.411 0.589 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -17.207 6.879 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.001 3.999 3 C -0.257 4.257 4 C 0.323 3.677 5 O -0.470 6.470 6 N -0.363 5.363 7 C -0.003 4.003 8 C 0.018 3.982 9 N -0.284 5.284 10 C -0.399 4.399 11 H 0.076 0.924 12 C -0.226 4.226 13 N -0.555 5.555 14 Si 0.781 3.219 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.212 1.212 18 C -0.010 4.010 19 C -0.223 4.223 20 C -0.251 4.251 21 C -0.165 4.165 22 C -0.205 4.205 23 C -0.194 4.194 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.169 0.831 28 H 0.247 0.753 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.441 -17.243 6.597 18.518 hybrid contribution 0.444 0.810 -1.146 1.472 sum -0.998 -16.432 5.451 17.342 Atomic orbital electron populations 1.21080 0.91722 1.02404 1.02622 1.22001 0.95811 0.93420 0.88621 1.22348 1.01327 0.90361 1.11688 1.19165 0.86789 0.85311 0.76427 1.90715 1.17006 1.88297 1.50976 1.45859 1.13455 1.05306 1.71657 1.21751 0.96039 0.83500 0.99025 1.20969 0.94145 0.82582 1.00502 1.43421 1.61930 1.19835 1.03215 1.19161 0.97949 1.32139 0.90650 0.92403 1.25738 0.94576 1.00295 1.01993 1.69957 0.98207 1.52470 1.34897 0.85575 0.76760 0.78254 0.81325 1.20045 1.21328 1.21202 1.21518 1.00042 0.87712 0.91731 1.23052 0.94715 1.03260 1.01230 1.23259 0.96314 1.05978 0.99577 1.21321 1.00690 0.87740 1.06734 1.23173 1.00388 0.97016 0.99942 1.23078 1.04094 1.00858 0.91326 0.91593 0.90338 0.91614 0.83066 0.75333 0.95342 0.93694 0.93671 0.90030 0.93530 0.87243 0.90726 0.87180 0.87836 0.92381 0.85437 0.88255 0.86679 0.86430 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 7.91 71.24 0.56 -2.49 16 2 C 0.00 0.08 5.81 -17.62 -0.10 -0.02 16 3 C -0.24 -6.07 9.67 23.43 0.23 -5.85 16 4 C 0.53 18.48 7.61 86.57 0.66 19.14 16 5 O -0.59 -24.48 13.28 -4.06 -0.05 -24.53 16 6 N -0.71 -24.66 5.55 -466.72 -2.59 -27.25 16 7 C 0.12 5.19 6.00 86.38 0.52 5.71 16 8 C 0.14 6.54 5.45 86.38 0.47 7.02 16 9 N -0.57 -27.87 2.78 -678.05 -1.88 -29.75 16 10 C -0.27 -14.58 8.62 84.04 0.72 -13.86 16 11 H 0.06 3.18 6.55 -2.91 -0.02 3.16 16 12 C -0.03 -1.53 4.97 84.86 0.42 -1.11 16 13 N -0.91 -51.27 11.33 21.65 0.25 -51.03 16 14 Si 0.95 44.72 29.61 68.60 2.03 46.75 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 17 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 18 C 0.10 4.10 6.56 44.99 0.30 4.39 16 19 C -0.18 -7.07 9.80 30.62 0.30 -6.77 16 20 C -0.21 -8.29 10.35 30.62 0.32 -7.97 16 21 C -0.15 -2.33 6.01 -11.54 -0.07 -2.40 16 22 C -0.17 -2.12 9.76 30.60 0.30 -1.82 16 23 C -0.16 -1.91 10.10 30.60 0.31 -1.60 16 24 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 25 H 0.08 1.48 6.30 -2.39 -0.02 1.46 16 26 H 0.07 2.02 6.10 -2.38 -0.01 2.01 16 27 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 28 H 0.41 11.89 8.46 -92.70 -0.78 11.11 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.88 8.07 -2.39 -0.02 1.86 16 32 H 0.08 4.17 5.37 -2.39 -0.01 4.16 16 33 H 0.26 13.92 8.32 -92.70 -0.77 13.15 16 34 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 35 H 0.07 3.22 6.37 -2.39 -0.02 3.20 16 36 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 38 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.10 1.30 6.42 -2.39 -0.02 1.29 16 41 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -65.74 351.99 2.90 -62.84 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.22 Total: 30.58 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.93 Total: -7.62 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.23 Total: -108.02 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.53 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.74 2.90 -62.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266583560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.131 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds