Wall clock time and date at job start Tue Mar 31 2020 00:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47121 * 119.99983 * 2 1 4 4 C 1.50699 * 119.99745 * 359.97438 * 3 2 1 5 5 C 1.32858 * 119.99958 * 180.02562 * 3 2 1 6 6 C 1.50703 * 120.00115 * 186.12492 * 5 3 2 7 7 C 1.50701 * 109.47020 * 125.96370 * 6 5 3 8 8 O 1.21282 * 120.00122 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99957 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00023 * 179.72485 * 9 7 6 11 11 H 1.08999 * 109.47076 * 35.27576 * 10 9 7 12 12 C 1.53000 * 109.46716 * 155.27706 * 10 9 7 13 13 N 1.46492 * 109.47131 * 304.99752 * 12 10 9 14 14 C 1.36944 * 119.99933 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00016 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00199 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00051 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46512 * 59.99807 * 18 16 14 20 20 H 1.48493 * 109.47342 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46931 * 300.00399 * 18 16 14 22 22 C 1.52994 * 109.46930 * 275.27665 * 10 9 7 23 23 C 1.53003 * 117.49889 * 128.74804 * 22 10 9 24 24 C 1.53003 * 117.50285 * 60.09055 * 22 10 9 25 25 H 1.08000 * 119.99870 * 180.02562 * 1 2 3 26 26 H 1.07993 * 119.99963 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00163 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46914 * 213.43591 * 4 3 2 29 29 H 1.09005 * 109.47183 * 333.43690 * 4 3 2 30 30 H 1.09003 * 109.47092 * 93.43711 * 4 3 2 31 31 H 1.08000 * 120.00518 * 6.12767 * 5 3 2 32 32 H 1.09006 * 109.47043 * 5.96885 * 6 5 3 33 33 H 1.08996 * 109.47299 * 245.96487 * 6 5 3 34 34 H 0.97002 * 119.99438 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.47002 * 65.00153 * 12 10 9 36 36 H 1.09006 * 109.46645 * 184.99893 * 12 10 9 37 37 H 0.96996 * 120.00238 * 0.02562 * 13 12 10 38 38 H 0.96999 * 120.00116 * 179.97438 * 17 16 14 39 39 H 1.09003 * 115.55454 * 274.41708 * 22 10 9 40 40 H 1.09001 * 117.49908 * 359.97438 * 23 22 10 41 41 H 1.09000 * 117.49806 * 145.01934 * 23 22 10 42 42 H 1.09004 * 117.50057 * 214.98009 * 24 22 10 43 43 H 1.09001 * 117.49348 * 359.97249 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3929 1.2741 -0.0005 6 6 4.1465 2.5717 0.1387 7 6 5.1207 2.4665 1.2837 8 8 5.1961 1.4388 1.9233 9 7 5.9084 3.5144 1.5969 10 6 6.8512 3.4142 2.7137 11 1 7.2477 2.4001 2.7645 12 6 8.0006 4.4013 2.5008 13 7 8.6159 4.1598 1.1935 14 6 9.6727 4.9272 0.7819 15 1 10.0523 5.7108 1.4209 16 6 10.2554 4.6987 -0.4571 17 7 9.7926 3.7441 -1.2361 18 14 11.6966 5.7461 -1.0189 19 1 12.8209 5.5959 -0.0604 20 1 12.1339 5.3040 -2.3673 21 1 11.2810 7.1706 -1.0750 22 6 6.1296 3.7458 4.0214 23 6 6.2667 2.7510 5.1758 24 6 4.9426 2.8649 4.4165 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.8720 3.3225 -0.5668 29 1 0.3332 2.4341 -0.4605 30 1 1.1820 2.9249 1.0251 31 1 3.9330 0.3442 -0.1008 32 1 3.4431 3.3813 0.3336 33 1 4.6903 2.7769 -0.7833 34 1 5.8478 4.3365 1.0855 35 1 7.6160 5.4205 2.5387 36 1 8.7463 4.2649 3.2842 37 1 8.2748 3.4563 0.6195 38 1 10.1995 3.5847 -2.1020 39 1 6.0762 4.8049 4.2735 40 1 6.8706 1.8601 5.0034 41 1 6.3032 3.1556 6.1873 42 1 4.1084 3.3445 4.9286 43 1 4.6754 2.0495 3.7443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269104421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:52 Heat of formation + Delta-G solvation = 26.662655 kcal Electronic energy + Delta-G solvation = -21505.726905 eV Core-core repulsion = 18359.671927 eV Total energy + Delta-G solvation = -3146.054979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81229 -37.54110 -36.59583 -34.98789 -33.35997 -32.46893 -31.08687 -29.03453 -27.89487 -26.40398 -24.00453 -22.18049 -21.68733 -21.40831 -20.10334 -19.87495 -17.89476 -17.36551 -16.77578 -16.05839 -15.97799 -15.13543 -14.92410 -14.47072 -14.17011 -13.94211 -13.61936 -13.26271 -13.12334 -12.92724 -12.80091 -12.35609 -12.10114 -11.69948 -11.62801 -11.50841 -11.14567 -11.02209 -10.91462 -10.87699 -10.80763 -10.56001 -10.22157 -10.09223 -9.93373 -9.69593 -9.45831 -8.92675 -8.58232 -8.22763 -6.98094 -5.79978 -3.09811 1.30461 2.93608 2.98050 3.41566 3.46288 3.47273 3.53455 4.18997 4.54319 4.64139 4.80858 4.90708 5.06232 5.16836 5.19290 5.26176 5.28687 5.36900 5.43709 5.51129 5.55993 5.61128 5.67233 5.77061 5.81383 5.86905 5.93037 5.93958 6.10463 6.23692 6.30258 6.38308 6.43130 6.50822 6.55016 6.65180 6.69657 6.90553 6.98031 7.65832 7.92039 8.37978 8.60304 9.49752 10.05445 10.41124 11.42269 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.004123 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.318999 B = 6789.598312 C = 8126.579845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.123 4.123 4 C -0.121 4.121 5 C -0.103 4.103 6 C -0.122 4.122 7 C 0.522 3.478 8 O -0.545 6.545 9 N -0.708 5.708 10 C 0.169 3.831 11 H 0.087 0.913 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.185 4.185 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.404 0.596 35 H 0.024 0.976 36 H 0.034 0.966 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.069 -2.095 5.238 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.177 4.177 5 C -0.121 4.121 6 C -0.161 4.161 7 C 0.309 3.691 8 O -0.424 6.424 9 N -0.358 5.358 10 C 0.064 3.936 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.182 4.182 23 C -0.209 4.209 24 C -0.222 4.222 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.131 0.869 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.239 0.761 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.858 -2.695 5.672 17.990 hybrid contribution 0.799 0.750 -0.743 1.324 sum -16.059 -1.945 4.929 16.911 Atomic orbital electron populations 1.24343 0.95704 1.01798 1.01638 1.21870 0.95253 0.96161 0.99248 1.20493 0.93881 0.94235 1.03672 1.20869 1.00071 0.94686 1.02113 1.22842 0.93757 0.98023 0.97492 1.20839 0.98255 0.98089 0.98954 1.20341 0.80835 0.83393 0.84564 1.90600 1.69050 1.29649 1.53071 1.45965 1.39236 1.16670 1.33927 1.20776 0.88263 1.01403 0.83170 0.89520 1.20911 0.91874 0.95051 0.90135 1.42336 1.37969 1.41788 1.15530 1.19172 1.07090 1.11327 0.99844 0.91197 1.24746 0.99888 0.98976 0.97162 1.69654 1.43669 1.33448 1.11180 0.86261 0.82495 0.79677 0.77678 1.21268 1.21689 1.21264 1.22655 1.02733 0.96850 0.95992 1.22892 1.01081 1.01257 0.95716 1.23272 0.91191 1.03680 1.04066 0.88379 0.88182 0.86891 0.91294 0.91691 0.91589 0.86335 0.88214 0.87414 0.76148 0.95796 0.94785 0.77999 0.93429 0.87987 0.88785 0.89281 0.90027 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 14.11 28.88 0.41 -1.37 16 2 C -0.11 -1.14 9.83 -37.83 -0.37 -1.51 16 3 C -0.12 -1.39 5.98 -102.87 -0.62 -2.01 16 4 C -0.12 -1.12 8.55 36.01 0.31 -0.81 16 5 C -0.10 -1.30 8.45 -36.16 -0.31 -1.61 16 6 C -0.12 -1.51 5.76 -29.03 -0.17 -1.68 16 7 C 0.52 8.21 7.15 -10.98 -0.08 8.13 16 8 O -0.55 -10.11 13.05 5.56 0.07 -10.04 16 9 N -0.71 -11.09 4.50 -53.81 -0.24 -11.33 16 10 C 0.17 2.85 2.43 -67.93 -0.17 2.68 16 11 H 0.09 1.68 7.34 -51.93 -0.38 1.30 16 12 C 0.15 2.88 5.80 -4.05 -0.02 2.86 16 13 N -0.73 -17.93 5.43 -59.91 -0.33 -18.26 16 14 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 15 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 18 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 C -0.16 -2.34 5.36 -90.62 -0.49 -2.82 16 23 C -0.17 -2.32 10.18 -26.69 -0.27 -2.60 16 24 C -0.19 -2.60 9.73 -26.69 -0.26 -2.86 16 25 H 0.10 0.74 8.06 -52.49 -0.42 0.32 16 26 H 0.10 0.81 6.09 -52.49 -0.32 0.49 16 27 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.07 0.59 6.63 -51.93 -0.34 0.24 16 29 H 0.06 0.52 6.26 -51.93 -0.33 0.20 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.12 1.61 8.05 -52.49 -0.42 1.19 16 32 H 0.10 1.02 5.78 -51.93 -0.30 0.72 16 33 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.40 5.95 8.60 -40.82 -0.35 5.60 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 10.08 7.33 -40.82 -0.30 9.78 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 40 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.12 1.93 5.00 -51.93 -0.26 1.67 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -31.01 354.10 -8.50 -39.51 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -6.77 Total: 15.49 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.28 Total: -10.81 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.16 Total: -56.55 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.01 -8.50 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269104421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.177 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds