Wall clock time and date at job start Tue Mar 31 2020 00:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47121 * 119.99983 * 2 1 4 4 C 1.50699 * 119.99745 * 359.97438 * 3 2 1 5 5 C 1.32858 * 119.99958 * 180.02562 * 3 2 1 6 6 C 1.50703 * 120.00115 * 186.12492 * 5 3 2 7 7 C 1.50701 * 109.47020 * 125.96370 * 6 5 3 8 8 O 1.21282 * 120.00122 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99957 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00023 * 179.72485 * 9 7 6 11 11 H 1.08999 * 109.47076 * 35.27576 * 10 9 7 12 12 C 1.53000 * 109.46716 * 155.27706 * 10 9 7 13 13 N 1.46492 * 109.47131 * 304.99752 * 12 10 9 14 14 C 1.36944 * 119.99933 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00016 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00199 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00051 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46512 * 59.99807 * 18 16 14 20 20 H 1.48493 * 109.47342 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46931 * 300.00399 * 18 16 14 22 22 C 1.52994 * 109.46930 * 275.27665 * 10 9 7 23 23 C 1.53003 * 117.49889 * 128.74804 * 22 10 9 24 24 C 1.53003 * 117.50285 * 60.09055 * 22 10 9 25 25 H 1.08000 * 119.99870 * 180.02562 * 1 2 3 26 26 H 1.07993 * 119.99963 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00163 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46914 * 213.43591 * 4 3 2 29 29 H 1.09005 * 109.47183 * 333.43690 * 4 3 2 30 30 H 1.09003 * 109.47092 * 93.43711 * 4 3 2 31 31 H 1.08000 * 120.00518 * 6.12767 * 5 3 2 32 32 H 1.09006 * 109.47043 * 5.96885 * 6 5 3 33 33 H 1.08996 * 109.47299 * 245.96487 * 6 5 3 34 34 H 0.97002 * 119.99438 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.47002 * 65.00153 * 12 10 9 36 36 H 1.09006 * 109.46645 * 184.99893 * 12 10 9 37 37 H 0.96996 * 120.00238 * 0.02562 * 13 12 10 38 38 H 0.96999 * 120.00116 * 179.97438 * 17 16 14 39 39 H 1.09003 * 115.55454 * 274.41708 * 22 10 9 40 40 H 1.09001 * 117.49908 * 359.97438 * 23 22 10 41 41 H 1.09000 * 117.49806 * 145.01934 * 23 22 10 42 42 H 1.09004 * 117.50057 * 214.98009 * 24 22 10 43 43 H 1.09001 * 117.49348 * 359.97249 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3929 1.2741 -0.0005 6 6 4.1465 2.5717 0.1387 7 6 5.1207 2.4665 1.2837 8 8 5.1961 1.4388 1.9233 9 7 5.9084 3.5144 1.5969 10 6 6.8512 3.4142 2.7137 11 1 7.2477 2.4001 2.7645 12 6 8.0006 4.4013 2.5008 13 7 8.6159 4.1598 1.1935 14 6 9.6727 4.9272 0.7819 15 1 10.0523 5.7108 1.4209 16 6 10.2554 4.6987 -0.4571 17 7 9.7926 3.7441 -1.2361 18 14 11.6966 5.7461 -1.0189 19 1 12.8209 5.5959 -0.0604 20 1 12.1339 5.3040 -2.3673 21 1 11.2810 7.1706 -1.0750 22 6 6.1296 3.7458 4.0214 23 6 6.2667 2.7510 5.1758 24 6 4.9426 2.8649 4.4165 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.8720 3.3225 -0.5668 29 1 0.3332 2.4341 -0.4605 30 1 1.1820 2.9249 1.0251 31 1 3.9330 0.3442 -0.1008 32 1 3.4431 3.3813 0.3336 33 1 4.6903 2.7769 -0.7833 34 1 5.8478 4.3365 1.0855 35 1 7.6160 5.4205 2.5387 36 1 8.7463 4.2649 3.2842 37 1 8.2748 3.4563 0.6195 38 1 10.1995 3.5847 -2.1020 39 1 6.0762 4.8049 4.2735 40 1 6.8706 1.8601 5.0034 41 1 6.3032 3.1556 6.1873 42 1 4.1084 3.3445 4.9286 43 1 4.6754 2.0495 3.7443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269104421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:52 Heat of formation + Delta-G solvation = 8.125785 kcal Electronic energy + Delta-G solvation = -21506.530724 eV Core-core repulsion = 18359.671927 eV Total energy + Delta-G solvation = -3146.858798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08126 -38.67972 -37.59683 -36.61106 -34.93668 -33.46805 -32.85655 -30.22225 -29.15442 -27.38079 -25.85363 -23.40558 -23.06901 -22.56804 -21.30505 -21.02718 -19.24275 -18.76850 -18.05289 -17.27781 -17.07432 -16.65200 -16.35093 -15.84027 -15.28537 -15.17074 -15.08462 -14.64101 -14.51499 -14.10967 -13.90189 -13.54622 -13.26965 -13.17277 -12.76207 -12.70609 -12.57228 -12.41015 -12.34148 -12.20675 -12.11413 -11.84596 -11.72612 -11.36462 -11.24893 -11.09042 -10.97036 -10.69131 -9.89350 -9.09878 -9.01222 -7.93843 -5.23670 0.45010 1.48887 1.51506 1.57606 1.72772 2.05347 2.37336 2.56699 3.05278 3.40238 3.59018 3.76838 3.92560 3.97886 4.04425 4.13368 4.17490 4.30723 4.37281 4.45454 4.47256 4.50445 4.62853 4.64716 4.81027 4.82670 4.90659 4.91805 5.01470 5.04797 5.12814 5.14869 5.29448 5.39458 5.50027 5.50479 5.60889 5.64094 5.81042 6.06284 6.26528 6.67281 7.34047 7.36229 8.06956 8.31462 9.28873 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.004123 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.318999 B = 6789.598312 C = 8126.579845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.144 4.144 3 C -0.107 4.107 4 C -0.124 4.124 5 C -0.139 4.139 6 C -0.109 4.109 7 C 0.516 3.484 8 O -0.577 6.577 9 N -0.706 5.706 10 C 0.178 3.822 11 H 0.054 0.946 12 C 0.151 3.849 13 N -0.742 5.742 14 C -0.246 4.246 15 H 0.078 0.922 16 C -0.073 4.073 17 N -0.968 5.968 18 Si 0.974 3.026 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.274 1.274 22 C -0.163 4.163 23 C -0.167 4.167 24 C -0.181 4.181 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.409 0.591 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.722 -0.360 6.072 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.107 4.107 4 C -0.180 4.180 5 C -0.157 4.157 6 C -0.148 4.148 7 C 0.305 3.695 8 O -0.458 6.458 9 N -0.356 5.356 10 C 0.073 3.927 11 H 0.072 0.928 12 C 0.024 3.976 13 N -0.386 5.386 14 C -0.378 4.378 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.803 3.197 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.200 1.200 22 C -0.183 4.183 23 C -0.205 4.205 24 C -0.218 4.218 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.127 0.873 34 H 0.245 0.755 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.206 0.794 38 H 0.059 0.941 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.523 -0.929 6.541 19.666 hybrid contribution 1.186 0.134 -0.940 1.520 sum -17.337 -0.795 5.601 18.237 Atomic orbital electron populations 1.24639 0.94984 1.03294 0.97812 1.21967 0.96167 0.95901 1.02205 1.20808 0.93532 0.95643 1.00694 1.20959 1.00664 0.93509 1.02840 1.22684 0.94459 0.97325 1.01267 1.20777 0.97811 0.98912 0.97304 1.20964 0.80963 0.82668 0.84945 1.90585 1.70056 1.30822 1.54347 1.45941 1.38855 1.17004 1.33782 1.20508 0.88208 0.98799 0.85165 0.92783 1.21024 0.92428 0.96454 0.87676 1.42504 1.37801 1.41158 1.17104 1.19593 1.07246 1.11127 0.99789 0.90366 1.25552 1.02790 1.00540 0.97627 1.69819 1.45216 1.35403 1.11355 0.85215 0.79400 0.78483 0.76640 1.20748 1.22431 1.20030 1.22568 1.02879 0.98011 0.94794 1.22977 1.00327 1.00456 0.96725 1.23197 0.91931 1.02866 1.03798 0.86732 0.86794 0.87501 0.90403 0.90099 0.90925 0.88613 0.85557 0.87321 0.75499 0.94050 0.94857 0.79350 0.94094 0.86019 0.90294 0.86615 0.87784 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 14.11 66.64 0.94 -1.71 16 2 C -0.14 -2.97 9.83 23.43 0.23 -2.74 16 3 C -0.11 -2.36 5.98 -18.71 -0.11 -2.47 16 4 C -0.12 -1.99 8.55 71.24 0.61 -1.38 16 5 C -0.14 -3.65 8.45 24.51 0.21 -3.44 16 6 C -0.11 -2.72 5.76 29.10 0.17 -2.55 16 7 C 0.52 16.70 7.15 87.66 0.63 17.33 16 8 O -0.58 -22.50 13.05 -3.04 -0.04 -22.54 16 9 N -0.71 -22.27 4.50 -442.53 -1.99 -24.26 16 10 C 0.18 6.06 2.43 44.99 0.11 6.17 16 11 H 0.05 2.20 7.34 -2.39 -0.02 2.18 16 12 C 0.15 5.79 5.80 86.38 0.50 6.29 16 13 N -0.74 -36.69 5.43 -343.45 -1.87 -38.55 16 14 C -0.25 -13.38 9.99 84.03 0.84 -12.54 16 15 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 16 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 17 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 18 Si 0.97 45.41 29.55 68.60 2.03 47.43 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 C -0.16 -4.46 5.36 -10.79 -0.06 -4.52 16 23 C -0.17 -4.31 10.18 30.62 0.31 -4.00 16 24 C -0.18 -4.87 9.73 30.62 0.30 -4.57 16 25 H 0.11 1.40 8.06 -2.91 -0.02 1.38 16 26 H 0.11 1.45 6.09 -2.91 -0.02 1.44 16 27 H 0.11 2.26 8.06 -2.91 -0.02 2.23 16 28 H 0.08 1.13 6.63 -2.39 -0.02 1.11 16 29 H 0.08 1.05 6.26 -2.38 -0.01 1.03 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 2.87 8.05 -2.91 -0.02 2.85 16 32 H 0.13 2.40 5.78 -2.38 -0.01 2.39 16 33 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.41 11.93 8.60 -92.71 -0.80 11.13 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.37 20.07 7.33 -92.71 -0.68 19.39 16 38 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 39 H 0.12 2.90 8.11 -2.39 -0.02 2.88 16 40 H 0.08 2.27 8.05 -2.39 -0.02 2.25 16 41 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 43 H 0.09 3.07 5.00 -2.39 -0.01 3.06 16 Total: -1.00 -67.47 354.10 3.08 -64.38 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: -0.47 Total: 45.59 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.14 Total: -13.77 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -3.58 Total: -121.10 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.04 Total: -22.54 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -67.47 3.08 -64.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269104421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.510 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds