Wall clock time and date at job start Tue Mar 31 2020 00:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47114 * 120.00608 * 2 1 4 4 C 1.50707 * 119.99436 * 5.49379 * 3 2 1 5 5 C 1.32860 * 120.00273 * 185.49446 * 3 2 1 6 6 C 1.50694 * 120.00213 * 6.25291 * 5 3 2 7 7 C 1.50699 * 109.47576 * 126.12338 * 6 5 3 8 8 O 1.21284 * 119.99927 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00385 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00247 * 179.72494 * 9 7 6 11 11 H 1.08999 * 109.47257 * 35.27503 * 10 9 7 12 12 C 1.53008 * 109.47233 * 155.27198 * 10 9 7 13 13 N 1.46496 * 109.46877 * 304.99967 * 12 10 9 14 14 C 1.36946 * 119.99648 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99572 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99927 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99979 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47198 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47042 * 119.99979 * 18 16 14 21 21 H 1.48502 * 109.46898 * 239.99532 * 18 16 14 22 22 C 1.52998 * 109.47105 * 275.27325 * 10 9 7 23 23 C 1.52995 * 117.50059 * 128.74643 * 22 10 9 24 24 C 1.53003 * 117.49926 * 60.08356 * 22 10 9 25 25 H 1.08000 * 119.99569 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99910 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.99739 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47037 * 269.99736 * 4 3 2 29 29 H 1.09003 * 109.47069 * 30.00497 * 4 3 2 30 30 H 1.08998 * 109.46716 * 150.00199 * 4 3 2 31 31 H 1.08006 * 120.00058 * 186.25215 * 5 3 2 32 32 H 1.09000 * 109.47201 * 6.12026 * 6 5 3 33 33 H 1.09001 * 109.47329 * 246.12313 * 6 5 3 34 34 H 0.97003 * 119.99990 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46597 * 65.00319 * 12 10 9 36 36 H 1.08999 * 109.46860 * 184.99891 * 12 10 9 37 37 H 0.96993 * 120.00483 * 359.97438 * 13 12 10 38 38 H 0.97000 * 119.99914 * 179.97438 * 17 16 14 39 39 H 1.09004 * 115.55039 * 274.41846 * 22 10 9 40 40 H 1.09004 * 117.49719 * 359.97438 * 23 22 10 41 41 H 1.08997 * 117.50034 * 145.02464 * 23 22 10 42 42 H 1.08992 * 117.49961 * 214.98284 * 24 22 10 43 43 H 1.09000 * 117.49508 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3161 2.5761 0.1250 5 6 3.3885 1.2765 -0.1102 6 6 4.1250 -0.0110 -0.3762 7 6 5.0037 0.1543 -1.5893 8 8 5.0297 1.2135 -2.1795 9 7 5.7606 -0.8749 -2.0185 10 6 6.6102 -0.7161 -3.2013 11 1 7.0040 0.2998 -3.2321 12 6 7.7707 -1.7110 -3.1330 13 7 8.4903 -1.5357 -1.8691 14 6 9.5745 -2.3222 -1.5838 15 1 9.8991 -3.0714 -2.2907 16 6 10.2561 -2.1566 -0.3859 17 7 9.8607 -1.2433 0.4753 18 14 11.7353 -3.2290 0.0029 19 1 11.9732 -4.1705 -1.1204 20 1 12.9326 -2.3710 0.1924 21 1 11.4758 -3.9982 1.2464 22 6 5.7845 -0.9815 -4.4617 23 6 5.8303 0.0713 -5.5709 24 6 4.5715 -0.0835 -4.7137 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8687 -0.9354 0.0004 28 1 1.0506 2.9393 -0.8678 29 1 0.4093 2.4195 0.7092 30 1 1.9473 3.3114 0.6239 31 1 3.9370 2.2014 -0.0090 32 1 3.4060 -0.8106 -0.5546 33 1 4.7411 -0.2623 0.4871 34 1 5.7401 -1.7220 -1.5463 35 1 7.3817 -2.7275 -3.1918 36 1 8.4509 -1.5335 -3.9661 37 1 8.1990 -0.8627 -1.2344 38 1 10.3368 -1.1278 1.3125 39 1 5.7082 -2.0264 -4.7624 40 1 6.4484 0.9532 -5.4026 41 1 5.7837 -0.2810 -6.6014 42 1 3.6975 -0.5376 -5.1805 43 1 4.3617 0.6960 -3.9813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269104427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:55 Heat of formation + Delta-G solvation = 27.588347 kcal Electronic energy + Delta-G solvation = -21541.690426 eV Core-core repulsion = 18395.675589 eV Total energy + Delta-G solvation = -3146.014838 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.80866 -37.55070 -36.60012 -34.98774 -33.35509 -32.02829 -31.09297 -29.95044 -28.00249 -25.42739 -23.95168 -22.14991 -21.95458 -21.48860 -20.52661 -19.94113 -17.68316 -17.30762 -16.69551 -16.07608 -15.76604 -15.26428 -14.89710 -14.50193 -14.33464 -13.86029 -13.49472 -13.24615 -13.09148 -12.88861 -12.64194 -12.42066 -12.10879 -12.04010 -11.67422 -11.56435 -11.16303 -11.01146 -10.90673 -10.83536 -10.69349 -10.49802 -10.16390 -10.08872 -9.92478 -9.70098 -9.45891 -8.93817 -8.57887 -8.24247 -6.98074 -5.80470 -3.10175 1.30180 2.93817 2.97248 3.40644 3.46587 3.48820 3.53755 4.19379 4.54164 4.63396 4.80412 4.90684 5.00604 5.11737 5.19553 5.28965 5.35319 5.42426 5.49785 5.53820 5.56196 5.59547 5.67915 5.70706 5.81371 5.87167 5.93213 5.96042 6.10748 6.23770 6.32404 6.36567 6.38528 6.51022 6.55326 6.67139 6.70361 6.89941 6.98291 7.66756 7.92460 8.37538 8.60739 9.49532 10.05218 10.40877 11.41984 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.004233 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.993201 B = 6612.552048 C = 7859.643257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.112 4.112 5 C -0.103 4.103 6 C -0.123 4.123 7 C 0.522 3.478 8 O -0.545 6.545 9 N -0.708 5.708 10 C 0.169 3.831 11 H 0.087 0.913 12 C 0.148 3.852 13 N -0.732 5.732 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C -0.163 4.163 23 C -0.172 4.172 24 C -0.185 4.185 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.404 0.596 35 H 0.024 0.976 36 H 0.035 0.965 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.500 2.335 -3.821 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.136 4.136 3 C -0.123 4.123 4 C -0.169 4.169 5 C -0.121 4.121 6 C -0.163 4.163 7 C 0.309 3.691 8 O -0.424 6.424 9 N -0.358 5.358 10 C 0.064 3.936 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.377 5.377 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.182 4.182 23 C -0.209 4.209 24 C -0.222 4.222 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.238 0.762 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.326 2.958 -4.255 18.085 hybrid contribution 0.850 -0.917 0.657 1.413 sum -16.477 2.040 -3.598 16.988 Atomic orbital electron populations 1.24367 0.95743 1.01818 1.00958 1.21997 0.95318 0.96461 0.99824 1.20507 0.93861 0.94231 1.03680 1.20749 0.99885 0.94287 1.01930 1.22858 0.93894 0.97994 0.97370 1.20868 0.99205 0.98291 0.97897 1.20355 0.79875 0.83847 0.85057 1.90596 1.66571 1.27168 1.58076 1.45963 1.44087 1.15541 1.30209 1.20778 0.89234 1.01420 0.82188 0.89519 1.20914 0.90989 0.95122 0.90955 1.42355 1.33919 1.44079 1.17302 1.19265 1.04413 1.12453 1.01167 0.91083 1.24743 0.99719 0.99262 0.97077 1.69674 1.42357 1.35811 1.10093 0.86120 0.82654 0.79605 0.77807 1.20551 1.21851 1.21868 1.22655 1.01768 0.96476 0.97343 1.22891 1.01848 1.00857 0.95345 1.23270 0.91336 1.03688 1.03898 0.88246 0.88343 0.86502 0.91499 0.92011 0.91698 0.86169 0.88275 0.87463 0.76159 0.95785 0.94773 0.78001 0.93532 0.87993 0.88785 0.89284 0.90029 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 14.07 28.88 0.41 -1.29 16 2 C -0.12 -1.21 9.20 -37.83 -0.35 -1.56 16 3 C -0.12 -1.39 5.98 -102.87 -0.61 -2.01 16 4 C -0.11 -1.07 9.38 36.01 0.34 -0.73 16 5 C -0.10 -1.31 8.43 -36.16 -0.31 -1.61 16 6 C -0.12 -1.55 5.92 -29.04 -0.17 -1.72 16 7 C 0.52 8.27 7.15 -10.99 -0.08 8.19 16 8 O -0.55 -10.14 13.05 5.55 0.07 -10.07 16 9 N -0.71 -11.16 4.50 -53.80 -0.24 -11.40 16 10 C 0.17 2.86 2.43 -67.93 -0.17 2.69 16 11 H 0.09 1.69 7.34 -51.93 -0.38 1.31 16 12 C 0.15 2.89 5.80 -4.04 -0.02 2.87 16 13 N -0.73 -17.97 5.43 -59.91 -0.33 -18.30 16 14 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 18 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C -0.16 -2.35 5.36 -90.62 -0.49 -2.84 16 23 C -0.17 -2.33 10.18 -26.69 -0.27 -2.60 16 24 C -0.19 -2.62 9.73 -26.69 -0.26 -2.88 16 25 H 0.10 0.80 6.31 -52.49 -0.33 0.47 16 26 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 27 H 0.12 1.10 6.00 -52.48 -0.31 0.78 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.51 6.67 -51.93 -0.35 0.16 16 30 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.12 1.61 8.04 -52.48 -0.42 1.19 16 32 H 0.10 1.04 5.41 -51.93 -0.28 0.76 16 33 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.40 6.00 8.60 -40.82 -0.35 5.64 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 10.09 7.33 -40.82 -0.30 9.79 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 40 H 0.09 1.34 8.05 -51.93 -0.42 0.93 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.12 1.94 5.00 -51.93 -0.26 1.68 16 LS Contribution 354.02 15.07 5.34 5.34 Total: -1.00 -31.07 354.02 -8.44 -39.51 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -6.75 Total: 15.55 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.23 Total: -10.70 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.16 Total: -56.69 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.07 -8.44 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269104427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.097 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds