Wall clock time and date at job start Tue Mar 31 2020 00:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47113 * 119.99860 * 2 1 4 4 C 1.50701 * 120.00457 * 359.97438 * 3 2 1 5 5 C 1.32874 * 119.99860 * 179.97438 * 3 2 1 6 6 C 1.50694 * 120.00122 * 174.08701 * 5 3 2 7 7 C 1.50704 * 109.47077 * 234.27784 * 6 5 3 8 8 O 1.21283 * 119.99909 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99650 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47632 * 325.00396 * 10 9 7 12 12 C 1.52999 * 109.47097 * 205.00036 * 10 9 7 13 13 N 1.46496 * 109.47174 * 55.00072 * 12 10 9 14 14 C 1.36938 * 119.99941 * 179.97438 * 13 12 10 15 15 H 1.07990 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99531 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00434 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99688 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47590 * 59.99830 * 18 16 14 20 20 H 1.48498 * 109.47301 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47222 * 299.99778 * 18 16 14 22 22 C 1.53005 * 109.46583 * 85.00309 * 10 9 7 23 23 C 1.52993 * 117.50215 * 8.74536 * 22 10 9 24 24 C 1.52994 * 117.49937 * 300.08163 * 22 10 9 25 25 H 1.08003 * 119.99564 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.00130 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00000 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.47052 * 265.16348 * 4 3 2 29 29 H 1.08998 * 109.47003 * 25.16198 * 4 3 2 30 30 H 1.08998 * 109.47515 * 145.16574 * 4 3 2 31 31 H 1.07998 * 119.99835 * 354.36055 * 5 3 2 32 32 H 1.08999 * 109.47693 * 354.27543 * 6 5 3 33 33 H 1.09004 * 109.47626 * 114.27781 * 6 5 3 34 34 H 0.96997 * 120.00454 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.46833 * 175.00564 * 12 10 9 36 36 H 1.09003 * 109.46868 * 294.99999 * 12 10 9 37 37 H 0.97009 * 119.99753 * 0.02562 * 13 12 10 38 38 H 0.97007 * 120.00243 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54700 * 154.41910 * 22 10 9 40 40 H 1.08999 * 117.50055 * 359.97438 * 23 22 10 41 41 H 1.09000 * 117.50213 * 145.01810 * 23 22 10 42 42 H 1.09008 * 117.50040 * 214.98071 * 24 22 10 43 43 H 1.09001 * 117.50446 * 0.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1466 2.5721 -0.1339 7 6 5.1166 2.4731 -1.2830 8 8 5.1892 1.4491 -1.9288 9 7 5.9035 3.5226 -1.5929 10 6 6.8469 3.4261 -2.7097 11 1 7.2405 2.4113 -2.7662 12 6 7.9990 4.4086 -2.4903 13 7 8.6126 4.1578 -1.1839 14 6 9.6714 4.9197 -0.7671 15 1 10.0537 5.7058 -1.4012 16 6 10.2531 4.6816 0.4705 17 7 9.7875 3.7232 1.2432 18 14 11.6969 5.7214 1.0394 19 1 11.2852 7.1467 1.1048 20 1 12.1327 5.2694 2.3851 21 1 12.8212 5.5745 0.0803 22 6 6.1272 3.7675 -4.0160 23 6 4.7054 4.3233 -3.9150 24 6 4.9354 2.8950 -4.4149 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.2046 2.9370 -1.0248 29 1 0.3235 2.4289 0.4360 30 1 1.8594 3.3158 0.5864 31 1 3.9329 0.3433 0.0928 32 1 3.4429 3.3831 -0.3214 33 1 4.6939 2.7717 0.7874 34 1 5.8457 4.3414 -1.0762 35 1 8.7448 4.2747 -3.2738 36 1 7.6173 5.4291 -2.5225 37 1 8.2694 3.4514 -0.6144 38 1 10.1943 3.5566 2.1079 39 1 6.7613 4.1496 -4.8161 40 1 4.2824 4.4455 -2.9179 41 1 4.4039 5.0709 -4.6487 42 1 4.7852 2.7034 -5.4775 43 1 4.6637 2.0779 -3.7465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269104429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:58 Heat of formation + Delta-G solvation = 30.879109 kcal Electronic energy + Delta-G solvation = -21659.498291 eV Core-core repulsion = 18513.626151 eV Total energy + Delta-G solvation = -3145.872139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.99807 -37.55407 -36.56320 -34.88873 -33.26321 -32.47176 -31.13519 -29.04838 -27.98426 -26.43371 -24.05157 -22.22561 -21.78265 -21.43014 -20.08043 -19.59810 -17.90072 -17.38657 -16.82649 -16.22751 -15.78810 -15.62024 -14.68202 -14.39434 -14.18478 -13.91782 -13.55535 -13.27228 -13.17252 -13.00326 -12.78765 -12.32636 -12.07272 -11.69104 -11.59763 -11.53749 -11.33161 -11.13176 -10.91048 -10.89336 -10.81588 -10.57024 -10.24565 -10.10785 -9.80527 -9.58191 -9.48379 -8.92810 -8.61191 -8.23628 -6.98073 -5.80053 -3.09792 1.29730 2.92592 2.95169 3.41552 3.46378 3.47253 3.59097 4.08941 4.54558 4.63113 4.79862 4.91722 5.04848 5.15960 5.19629 5.22496 5.25728 5.33525 5.43571 5.52495 5.59081 5.62003 5.65915 5.75994 5.80264 5.85281 5.93168 6.02973 6.04444 6.23873 6.29842 6.33083 6.42466 6.49727 6.54977 6.64484 6.70506 6.89759 6.96617 7.65880 7.88491 8.37883 8.57101 9.49711 10.05478 10.41099 11.42190 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.004101 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.188324 B = 6825.294277 C = 7970.693865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.520 3.480 8 O -0.541 6.541 9 N -0.709 5.709 10 C 0.168 3.832 11 H 0.090 0.910 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.187 4.187 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.405 0.595 35 H 0.033 0.967 36 H 0.026 0.974 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.422 -1.652 -4.874 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.178 4.178 5 C -0.122 4.122 6 C -0.162 4.162 7 C 0.307 3.693 8 O -0.420 6.420 9 N -0.360 5.360 10 C 0.063 3.937 11 H 0.108 0.892 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.224 4.224 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.131 0.869 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.240 0.760 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.218 -2.255 -5.321 18.162 hybrid contribution 0.825 0.723 0.740 1.323 sum -16.393 -1.532 -4.581 17.090 Atomic orbital electron populations 1.24349 0.95706 1.01809 1.01581 1.21867 0.95257 0.96157 0.99277 1.20496 0.93871 0.94244 1.03562 1.20871 1.00086 0.94680 1.02128 1.22837 0.93762 0.97991 0.97620 1.20841 0.98289 0.98118 0.98920 1.20371 0.80943 0.83326 0.84680 1.90613 1.68899 1.29768 1.52676 1.45992 1.39334 1.16824 1.33867 1.20728 0.88386 1.01437 0.83104 0.89207 1.20905 0.91683 0.95290 0.90122 1.42338 1.37825 1.41663 1.15794 1.19168 1.06953 1.11326 0.99970 0.91201 1.24743 0.99880 0.98952 0.97202 1.69653 1.43607 1.33191 1.11505 0.86262 0.82511 0.79635 0.77701 1.21270 1.21698 1.21275 1.22700 0.90828 1.05018 0.99439 1.22868 0.99315 0.96985 1.02257 1.23340 1.02477 0.95032 1.01549 0.88165 0.88366 0.86881 0.91555 0.91674 0.91317 0.86315 0.88273 0.87367 0.76033 0.94926 0.95636 0.78004 0.93434 0.87389 0.89089 0.89613 0.89869 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 14.12 28.88 0.41 -1.36 16 2 C -0.11 -1.14 9.83 -37.83 -0.37 -1.51 16 3 C -0.12 -1.37 5.98 -102.87 -0.62 -1.99 16 4 C -0.12 -1.11 8.54 36.01 0.31 -0.81 16 5 C -0.10 -1.31 8.45 -36.16 -0.31 -1.62 16 6 C -0.12 -1.50 5.77 -29.04 -0.17 -1.67 16 7 C 0.52 8.08 6.66 -10.98 -0.07 8.01 16 8 O -0.54 -10.01 13.06 5.55 0.07 -9.93 16 9 N -0.71 -10.92 3.06 -53.80 -0.16 -11.09 16 10 C 0.17 2.82 2.59 -67.93 -0.18 2.65 16 11 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 12 C 0.15 2.86 5.80 -4.04 -0.02 2.83 16 13 N -0.73 -17.86 5.43 -59.92 -0.33 -18.18 16 14 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 18 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.16 -2.29 5.70 -90.62 -0.52 -2.81 16 23 C -0.18 -2.27 9.74 -26.70 -0.26 -2.53 16 24 C -0.19 -2.64 9.82 -26.70 -0.26 -2.90 16 25 H 0.10 0.81 6.06 -52.48 -0.32 0.49 16 26 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 27 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.06 0.52 6.19 -51.93 -0.32 0.20 16 30 H 0.07 0.58 6.70 -51.93 -0.35 0.23 16 31 H 0.12 1.61 8.05 -52.49 -0.42 1.19 16 32 H 0.10 1.00 5.79 -51.93 -0.30 0.70 16 33 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.40 5.91 8.60 -40.82 -0.35 5.55 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.39 10.03 7.33 -40.82 -0.30 9.73 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 40 H 0.09 1.16 6.67 -51.93 -0.35 0.81 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.12 1.92 5.01 -51.93 -0.26 1.66 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -30.95 351.20 -8.44 -39.39 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -6.71 Total: 15.32 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.30 Total: -10.90 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.23 Total: -56.20 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.95 -8.44 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269104429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.268 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds