Wall clock time and date at job start Tue Mar 31 2020 00:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47113 * 119.99860 * 2 1 4 4 C 1.50701 * 120.00457 * 359.97438 * 3 2 1 5 5 C 1.32874 * 119.99860 * 179.97438 * 3 2 1 6 6 C 1.50694 * 120.00122 * 174.08701 * 5 3 2 7 7 C 1.50704 * 109.47077 * 234.27784 * 6 5 3 8 8 O 1.21283 * 119.99909 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99650 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47632 * 325.00396 * 10 9 7 12 12 C 1.52999 * 109.47097 * 205.00036 * 10 9 7 13 13 N 1.46496 * 109.47174 * 55.00072 * 12 10 9 14 14 C 1.36938 * 119.99941 * 179.97438 * 13 12 10 15 15 H 1.07990 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99531 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00434 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99688 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47590 * 59.99830 * 18 16 14 20 20 H 1.48498 * 109.47301 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47222 * 299.99778 * 18 16 14 22 22 C 1.53005 * 109.46583 * 85.00309 * 10 9 7 23 23 C 1.52993 * 117.50215 * 8.74536 * 22 10 9 24 24 C 1.52994 * 117.49937 * 300.08163 * 22 10 9 25 25 H 1.08003 * 119.99564 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.00130 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00000 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.47052 * 265.16348 * 4 3 2 29 29 H 1.08998 * 109.47003 * 25.16198 * 4 3 2 30 30 H 1.08998 * 109.47515 * 145.16574 * 4 3 2 31 31 H 1.07998 * 119.99835 * 354.36055 * 5 3 2 32 32 H 1.08999 * 109.47693 * 354.27543 * 6 5 3 33 33 H 1.09004 * 109.47626 * 114.27781 * 6 5 3 34 34 H 0.96997 * 120.00454 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.46833 * 175.00564 * 12 10 9 36 36 H 1.09003 * 109.46868 * 294.99999 * 12 10 9 37 37 H 0.97009 * 119.99753 * 0.02562 * 13 12 10 38 38 H 0.97007 * 120.00243 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54700 * 154.41910 * 22 10 9 40 40 H 1.08999 * 117.50055 * 359.97438 * 23 22 10 41 41 H 1.09000 * 117.50213 * 145.01810 * 23 22 10 42 42 H 1.09008 * 117.50040 * 214.98071 * 24 22 10 43 43 H 1.09001 * 117.50446 * 0.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1466 2.5721 -0.1339 7 6 5.1166 2.4731 -1.2830 8 8 5.1892 1.4491 -1.9288 9 7 5.9035 3.5226 -1.5929 10 6 6.8469 3.4261 -2.7097 11 1 7.2405 2.4113 -2.7662 12 6 7.9990 4.4086 -2.4903 13 7 8.6126 4.1578 -1.1839 14 6 9.6714 4.9197 -0.7671 15 1 10.0537 5.7058 -1.4012 16 6 10.2531 4.6816 0.4705 17 7 9.7875 3.7232 1.2432 18 14 11.6969 5.7214 1.0394 19 1 11.2852 7.1467 1.1048 20 1 12.1327 5.2694 2.3851 21 1 12.8212 5.5745 0.0803 22 6 6.1272 3.7675 -4.0160 23 6 4.7054 4.3233 -3.9150 24 6 4.9354 2.8950 -4.4149 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.2046 2.9370 -1.0248 29 1 0.3235 2.4289 0.4360 30 1 1.8594 3.3158 0.5864 31 1 3.9329 0.3433 0.0928 32 1 3.4429 3.3831 -0.3214 33 1 4.6939 2.7717 0.7874 34 1 5.8457 4.3414 -1.0762 35 1 8.7448 4.2747 -3.2738 36 1 7.6173 5.4291 -2.5225 37 1 8.2694 3.4514 -0.6144 38 1 10.1943 3.5566 2.1079 39 1 6.7613 4.1496 -4.8161 40 1 4.2824 4.4455 -2.9179 41 1 4.4039 5.0709 -4.6487 42 1 4.7852 2.7034 -5.4775 43 1 4.6637 2.0779 -3.7465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269104429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:58 Heat of formation + Delta-G solvation = 12.921746 kcal Electronic energy + Delta-G solvation = -21660.276981 eV Core-core repulsion = 18513.626151 eV Total energy + Delta-G solvation = -3146.650829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.25095 -38.66782 -37.57688 -36.54107 -34.77045 -33.49343 -32.86436 -30.26972 -29.21133 -27.38860 -25.89621 -23.47220 -23.05487 -22.65482 -21.13049 -20.85408 -19.25466 -18.76648 -18.06171 -17.39398 -17.11400 -16.72109 -16.48865 -15.52580 -15.26363 -15.18484 -15.13543 -14.67394 -14.50194 -14.12523 -13.87285 -13.48976 -13.26445 -13.10863 -12.82786 -12.69262 -12.67115 -12.52298 -12.33460 -12.20174 -12.12379 -11.83133 -11.72849 -11.37556 -11.26121 -10.97383 -10.84837 -10.70054 -9.91193 -9.10310 -9.00649 -7.93603 -5.23211 0.44618 1.49027 1.51535 1.57617 1.70562 2.06030 2.42608 2.56601 2.97441 3.40565 3.63474 3.76087 3.91962 3.99195 4.04829 4.12023 4.19566 4.32178 4.40514 4.43815 4.50008 4.52081 4.61732 4.67406 4.81686 4.84507 4.90384 4.90917 5.00862 5.06857 5.14313 5.17112 5.27875 5.40591 5.49677 5.50880 5.60572 5.64059 5.80668 6.05939 6.26824 6.64882 7.34191 7.34511 8.07601 8.32009 9.29101 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.004101 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.188324 B = 6825.294277 C = 7970.693865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.145 4.145 3 C -0.106 4.106 4 C -0.124 4.124 5 C -0.140 4.140 6 C -0.110 4.110 7 C 0.515 3.485 8 O -0.575 6.575 9 N -0.706 5.706 10 C 0.179 3.821 11 H 0.057 0.943 12 C 0.151 3.849 13 N -0.742 5.742 14 C -0.245 4.245 15 H 0.078 0.922 16 C -0.073 4.073 17 N -0.967 5.967 18 Si 0.973 3.027 19 H -0.275 1.275 20 H -0.298 1.298 21 H -0.281 1.281 22 C -0.168 4.168 23 C -0.158 4.158 24 C -0.192 4.192 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.410 0.590 35 H 0.034 0.966 36 H 0.041 0.959 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.170 0.179 -5.561 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.106 4.106 4 C -0.180 4.180 5 C -0.158 4.158 6 C -0.149 4.149 7 C 0.304 3.696 8 O -0.455 6.455 9 N -0.357 5.357 10 C 0.073 3.927 11 H 0.075 0.925 12 C 0.024 3.976 13 N -0.386 5.386 14 C -0.377 4.377 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.802 3.198 19 H -0.201 1.201 20 H -0.225 1.225 21 H -0.208 1.208 22 C -0.188 4.188 23 C -0.195 4.195 24 C -0.229 4.229 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.246 0.754 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.140 0.860 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.978 -0.391 -6.043 19.920 hybrid contribution 1.238 0.079 0.888 1.525 sum -17.740 -0.311 -5.155 18.476 Atomic orbital electron populations 1.24646 0.94988 1.03305 0.97770 1.21966 0.96173 0.95908 1.02225 1.20811 0.93525 0.95651 1.00601 1.20961 1.00686 0.93501 1.02845 1.22681 0.94466 0.97305 1.01380 1.20783 0.97878 0.98938 0.97261 1.20978 0.81046 0.82584 0.85019 1.90599 1.69937 1.30983 1.53980 1.45949 1.38915 1.17120 1.33668 1.20435 0.88342 0.98829 0.85082 0.92531 1.21013 0.92282 0.96566 0.87695 1.42507 1.37635 1.41032 1.17382 1.19587 1.07111 1.11108 0.99895 0.90387 1.25543 1.02783 1.00495 0.97690 1.69818 1.45151 1.35143 1.11680 0.85219 0.79429 0.78462 0.76650 1.20056 1.22452 1.20764 1.22615 0.91600 1.06254 0.98305 1.22964 0.97227 0.96381 1.02886 1.23265 1.02417 0.95177 1.02002 0.86768 0.86731 0.87507 0.90903 0.90099 0.90373 0.88630 0.85549 0.87298 0.75411 0.94840 0.94097 0.79338 0.94109 0.86019 0.88976 0.87237 0.88258 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 14.12 66.64 0.94 -1.70 16 2 C -0.14 -2.97 9.83 23.42 0.23 -2.74 16 3 C -0.11 -2.32 5.98 -18.71 -0.11 -2.44 16 4 C -0.12 -1.98 8.54 71.24 0.61 -1.37 16 5 C -0.14 -3.66 8.45 24.51 0.21 -3.45 16 6 C -0.11 -2.70 5.77 29.10 0.17 -2.53 16 7 C 0.52 16.44 6.66 87.66 0.58 17.02 16 8 O -0.57 -22.31 13.06 -3.04 -0.04 -22.35 16 9 N -0.71 -21.85 3.06 -442.51 -1.35 -23.20 16 10 C 0.18 6.03 2.59 44.99 0.12 6.15 16 11 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 12 C 0.15 5.77 5.80 86.38 0.50 6.27 16 13 N -0.74 -36.53 5.43 -343.47 -1.87 -38.39 16 14 C -0.25 -13.32 9.99 84.03 0.84 -12.48 16 15 H 0.08 4.03 7.83 -2.92 -0.02 4.01 16 16 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 17 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 18 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.17 -4.61 5.70 -10.80 -0.06 -4.67 16 23 C -0.16 -3.66 9.74 30.62 0.30 -3.36 16 24 C -0.19 -5.20 9.82 30.62 0.30 -4.90 16 25 H 0.11 1.45 6.06 -2.91 -0.02 1.43 16 26 H 0.11 1.40 8.06 -2.91 -0.02 1.38 16 27 H 0.11 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 1.04 6.19 -2.39 -0.01 1.02 16 30 H 0.08 1.11 6.70 -2.39 -0.02 1.10 16 31 H 0.10 2.86 8.05 -2.91 -0.02 2.84 16 32 H 0.13 2.35 5.79 -2.39 -0.01 2.33 16 33 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.41 11.78 8.60 -92.71 -0.80 10.98 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.37 19.98 7.33 -92.70 -0.68 19.30 16 38 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 39 H 0.12 3.00 8.11 -2.38 -0.02 2.98 16 40 H 0.09 2.13 6.67 -2.39 -0.02 2.11 16 41 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.09 3.05 5.01 -2.39 -0.01 3.04 16 Total: -1.00 -67.34 351.20 3.67 -63.67 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.46 Total: 44.88 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.09 Total: -13.82 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -2.94 Total: -119.79 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.35 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.34 3.67 -63.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269104429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.591 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds