Wall clock time and date at job start Tue Mar 31 2020 00:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47117 * 119.99468 * 2 1 4 4 C 1.50705 * 120.00232 * 5.49513 * 3 2 1 5 5 C 1.32869 * 120.00105 * 185.49640 * 3 2 1 6 6 C 1.50711 * 119.99501 * 6.24960 * 5 3 2 7 7 C 1.50699 * 109.47049 * 126.12733 * 6 5 3 8 8 O 1.21281 * 119.99917 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99868 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99717 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47357 * 324.99542 * 10 9 7 12 12 C 1.53008 * 109.46953 * 204.99986 * 10 9 7 13 13 N 1.46496 * 109.46873 * 54.99636 * 12 10 9 14 14 C 1.36939 * 119.99665 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.38824 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99951 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99548 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47317 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46983 * 120.00190 * 18 16 14 21 21 H 1.48501 * 109.47095 * 239.99902 * 18 16 14 22 22 C 1.53002 * 109.47604 * 84.99990 * 10 9 7 23 23 C 1.52995 * 117.49361 * 8.74543 * 22 10 9 24 24 C 1.52995 * 117.49492 * 300.08720 * 22 10 9 25 25 H 1.08008 * 119.99677 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00219 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00219 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46886 * 269.99707 * 4 3 2 29 29 H 1.08995 * 109.47032 * 29.99898 * 4 3 2 30 30 H 1.08996 * 109.46776 * 150.00043 * 4 3 2 31 31 H 1.07996 * 120.00554 * 186.25241 * 5 3 2 32 32 H 1.08995 * 109.47029 * 6.12379 * 6 5 3 33 33 H 1.09004 * 109.46727 * 246.12320 * 6 5 3 34 34 H 0.96994 * 119.99868 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47151 * 174.99943 * 12 10 9 36 36 H 1.08996 * 109.46710 * 294.99798 * 12 10 9 37 37 H 0.97006 * 120.00689 * 0.02562 * 13 12 10 38 38 H 0.97004 * 119.99530 * 179.97438 * 17 16 14 39 39 H 1.08995 * 115.55160 * 154.41688 * 22 10 9 40 40 H 1.08995 * 117.50276 * 359.97438 * 23 22 10 41 41 H 1.09003 * 117.49944 * 145.02180 * 23 22 10 42 42 H 1.09000 * 117.49639 * 214.97625 * 24 22 10 43 43 H 1.09001 * 117.50487 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3158 2.5762 0.1250 5 6 3.3883 1.2769 -0.1102 6 6 4.1249 -0.0107 -0.3763 7 6 5.0036 0.1547 -1.5894 8 8 5.0295 1.2140 -2.1795 9 7 5.7614 -0.8742 -2.0179 10 6 6.6159 -0.7132 -3.1969 11 1 6.1229 -0.0596 -3.9165 12 6 6.8649 -2.0805 -3.8369 13 7 5.5815 -2.7238 -4.1290 14 6 5.5537 -3.9642 -4.7085 15 1 6.4778 -4.4683 -4.9498 16 6 4.3376 -4.5736 -4.9858 17 7 3.2114 -3.9589 -4.6922 18 14 4.2997 -6.2659 -5.7757 19 1 5.6893 -6.7372 -6.0033 20 1 3.5962 -7.2160 -4.8770 21 1 3.5832 -6.1901 -7.0742 22 6 7.9516 -0.0953 -2.7782 23 6 8.2300 0.0365 -1.2796 24 6 7.9150 1.2817 -2.1123 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8688 -0.9353 -0.0004 28 1 1.0502 2.9393 -0.8678 29 1 0.4091 2.4195 0.7092 30 1 1.9470 3.3116 0.6239 31 1 3.9367 2.2018 -0.0091 32 1 3.4060 -0.8103 -0.5546 33 1 4.7411 -0.2618 0.4871 34 1 5.7414 -1.7209 -1.5453 35 1 7.4258 -1.9517 -4.7625 36 1 7.4361 -2.7046 -3.1497 37 1 4.7515 -2.2708 -3.9126 38 1 2.3617 -4.3846 -4.8863 39 1 8.7969 -0.3170 -3.4296 40 1 7.4616 -0.3166 -0.5920 41 1 9.2586 -0.0982 -0.9450 42 1 8.7365 1.9656 -2.3253 43 1 6.9395 1.7476 -1.9728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269104430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:02 Heat of formation + Delta-G solvation = 31.953494 kcal Electronic energy + Delta-G solvation = -21747.578018 eV Core-core repulsion = 18601.752468 eV Total energy + Delta-G solvation = -3145.825551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98035 -37.52836 -36.50617 -34.88480 -33.24359 -31.96546 -31.10829 -29.88453 -28.09998 -25.39692 -24.00361 -22.22661 -21.89789 -21.47173 -20.59519 -19.59510 -17.59505 -17.28853 -16.75339 -16.09817 -15.81155 -15.40892 -14.77347 -14.53272 -14.26496 -13.63842 -13.44702 -13.26332 -13.13977 -12.90104 -12.54601 -12.30810 -12.19217 -11.91218 -11.67403 -11.52592 -11.26634 -11.15772 -10.89989 -10.84656 -10.58891 -10.38657 -10.21356 -10.06804 -9.80630 -9.57764 -9.47676 -8.93425 -8.59241 -8.16618 -6.97432 -5.79858 -3.09507 1.39949 2.94991 3.05419 3.40825 3.46833 3.48994 3.60773 4.08899 4.54894 4.71396 4.89265 4.93010 5.02219 5.16951 5.21625 5.22683 5.40203 5.51694 5.52826 5.55172 5.59668 5.63300 5.70265 5.80206 5.81122 5.85505 6.00633 6.03484 6.05214 6.24093 6.33377 6.42080 6.49592 6.51879 6.54588 6.70841 6.76381 6.97574 6.99184 7.67212 7.90080 8.37989 8.58918 9.50014 10.05953 10.41494 11.42510 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.005450 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.591188 B = 5136.297395 C = 7294.425825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.122 4.122 7 C 0.520 3.480 8 O -0.542 6.542 9 N -0.710 5.710 10 C 0.168 3.832 11 H 0.090 0.910 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.188 4.188 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.404 0.596 35 H 0.033 0.967 36 H 0.026 0.974 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 10.128 12.251 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.141 4.141 3 C -0.111 4.111 4 C -0.169 4.169 5 C -0.133 4.133 6 C -0.161 4.161 7 C 0.307 3.693 8 O -0.420 6.420 9 N -0.360 5.360 10 C 0.063 3.937 11 H 0.108 0.892 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.224 4.224 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.239 0.761 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.209 10.718 11.736 16.046 hybrid contribution -0.265 -1.360 -0.286 1.415 sum 1.944 9.358 11.450 14.915 Atomic orbital electron populations 1.24399 0.95784 1.01894 1.00113 1.22010 0.95449 0.96419 1.00234 1.20558 0.93906 0.94300 1.02354 1.20764 0.99882 0.94203 1.02101 1.22749 0.93999 0.97642 0.98952 1.20855 0.99411 0.98850 0.97012 1.20409 0.79549 0.83925 0.85461 1.90605 1.66063 1.27280 1.58048 1.45992 1.43985 1.15271 1.30801 1.20726 0.88046 0.98086 0.86827 0.89231 1.20908 0.90508 0.89841 0.96753 1.42357 1.02059 1.19013 1.74213 1.19265 0.92514 0.93295 1.32217 0.91089 1.24745 0.95318 0.98779 1.01952 1.69678 0.96617 1.38245 1.53353 0.86125 0.77287 0.84064 0.78746 1.20549 1.21884 1.21862 1.22697 0.99181 1.00361 0.95731 1.22875 1.01577 1.03080 0.93911 1.23338 1.04246 0.90773 1.04073 0.88117 0.88316 0.86276 0.91311 0.91930 0.91831 0.86445 0.87620 0.88355 0.76064 0.94932 0.95630 0.78001 0.93549 0.87395 0.89040 0.89603 0.89861 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 14.07 28.88 0.41 -1.67 16 2 C -0.12 -1.53 9.20 -37.83 -0.35 -1.88 16 3 C -0.11 -1.38 5.98 -102.87 -0.61 -1.99 16 4 C -0.11 -1.16 9.39 36.01 0.34 -0.83 16 5 C -0.12 -1.47 8.43 -36.15 -0.30 -1.78 16 6 C -0.12 -1.54 5.93 -29.03 -0.17 -1.71 16 7 C 0.52 8.20 6.66 -10.99 -0.07 8.13 16 8 O -0.54 -10.11 13.06 5.56 0.07 -10.03 16 9 N -0.71 -11.06 3.05 -53.80 -0.16 -11.23 16 10 C 0.17 2.84 2.59 -67.93 -0.18 2.67 16 11 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 12 C 0.15 2.88 5.80 -4.04 -0.02 2.85 16 13 N -0.73 -17.99 5.43 -59.91 -0.33 -18.31 16 14 C -0.24 -6.63 9.99 -15.05 -0.15 -6.78 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 18 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C -0.16 -2.29 5.71 -90.62 -0.52 -2.81 16 23 C -0.18 -2.26 9.74 -26.70 -0.26 -2.52 16 24 C -0.19 -2.61 9.82 -26.70 -0.26 -2.87 16 25 H 0.10 1.04 8.06 -52.48 -0.42 0.62 16 26 H 0.10 0.99 6.31 -52.49 -0.33 0.65 16 27 H 0.12 1.45 6.00 -52.49 -0.31 1.14 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.56 6.67 -51.93 -0.35 0.21 16 30 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 31 H 0.12 1.48 8.04 -52.49 -0.42 1.05 16 32 H 0.11 1.35 5.41 -51.93 -0.28 1.07 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 5.98 8.60 -40.82 -0.35 5.63 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.39 10.14 7.33 -40.82 -0.30 9.84 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 40 H 0.09 1.16 6.67 -51.93 -0.35 0.81 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.12 1.88 5.01 -51.93 -0.26 1.62 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -31.25 351.13 -8.37 -39.62 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -6.69 Total: 16.24 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -2.25 Total: -11.62 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.23 Total: -56.61 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.25 -8.37 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269104430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.570 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds