Wall clock time and date at job start Tue Mar 31 2020 00:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47117 * 119.99468 * 2 1 4 4 C 1.50705 * 120.00232 * 5.49513 * 3 2 1 5 5 C 1.32869 * 120.00105 * 185.49640 * 3 2 1 6 6 C 1.50711 * 119.99501 * 6.24960 * 5 3 2 7 7 C 1.50699 * 109.47049 * 126.12733 * 6 5 3 8 8 O 1.21281 * 119.99917 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99868 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99717 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47357 * 324.99542 * 10 9 7 12 12 C 1.53008 * 109.46953 * 204.99986 * 10 9 7 13 13 N 1.46496 * 109.46873 * 54.99636 * 12 10 9 14 14 C 1.36939 * 119.99665 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.38824 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99951 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99548 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47317 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46983 * 120.00190 * 18 16 14 21 21 H 1.48501 * 109.47095 * 239.99902 * 18 16 14 22 22 C 1.53002 * 109.47604 * 84.99990 * 10 9 7 23 23 C 1.52995 * 117.49361 * 8.74543 * 22 10 9 24 24 C 1.52995 * 117.49492 * 300.08720 * 22 10 9 25 25 H 1.08008 * 119.99677 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00219 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00219 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46886 * 269.99707 * 4 3 2 29 29 H 1.08995 * 109.47032 * 29.99898 * 4 3 2 30 30 H 1.08996 * 109.46776 * 150.00043 * 4 3 2 31 31 H 1.07996 * 120.00554 * 186.25241 * 5 3 2 32 32 H 1.08995 * 109.47029 * 6.12379 * 6 5 3 33 33 H 1.09004 * 109.46727 * 246.12320 * 6 5 3 34 34 H 0.96994 * 119.99868 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47151 * 174.99943 * 12 10 9 36 36 H 1.08996 * 109.46710 * 294.99798 * 12 10 9 37 37 H 0.97006 * 120.00689 * 0.02562 * 13 12 10 38 38 H 0.97004 * 119.99530 * 179.97438 * 17 16 14 39 39 H 1.08995 * 115.55160 * 154.41688 * 22 10 9 40 40 H 1.08995 * 117.50276 * 359.97438 * 23 22 10 41 41 H 1.09003 * 117.49944 * 145.02180 * 23 22 10 42 42 H 1.09000 * 117.49639 * 214.97625 * 24 22 10 43 43 H 1.09001 * 117.50487 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3158 2.5762 0.1250 5 6 3.3883 1.2769 -0.1102 6 6 4.1249 -0.0107 -0.3763 7 6 5.0036 0.1547 -1.5894 8 8 5.0295 1.2140 -2.1795 9 7 5.7614 -0.8742 -2.0179 10 6 6.6159 -0.7132 -3.1969 11 1 6.1229 -0.0596 -3.9165 12 6 6.8649 -2.0805 -3.8369 13 7 5.5815 -2.7238 -4.1290 14 6 5.5537 -3.9642 -4.7085 15 1 6.4778 -4.4683 -4.9498 16 6 4.3376 -4.5736 -4.9858 17 7 3.2114 -3.9589 -4.6922 18 14 4.2997 -6.2659 -5.7757 19 1 5.6893 -6.7372 -6.0033 20 1 3.5962 -7.2160 -4.8770 21 1 3.5832 -6.1901 -7.0742 22 6 7.9516 -0.0953 -2.7782 23 6 8.2300 0.0365 -1.2796 24 6 7.9150 1.2817 -2.1123 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8688 -0.9353 -0.0004 28 1 1.0502 2.9393 -0.8678 29 1 0.4091 2.4195 0.7092 30 1 1.9470 3.3116 0.6239 31 1 3.9367 2.2018 -0.0091 32 1 3.4060 -0.8103 -0.5546 33 1 4.7411 -0.2618 0.4871 34 1 5.7414 -1.7209 -1.5453 35 1 7.4258 -1.9517 -4.7625 36 1 7.4361 -2.7046 -3.1497 37 1 4.7515 -2.2708 -3.9126 38 1 2.3617 -4.3846 -4.8863 39 1 8.7969 -0.3170 -3.4296 40 1 7.4616 -0.3166 -0.5920 41 1 9.2586 -0.0982 -0.9450 42 1 8.7365 1.9656 -2.3253 43 1 6.9395 1.7476 -1.9728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269104430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:01 Heat of formation + Delta-G solvation = 13.869812 kcal Electronic energy + Delta-G solvation = -21748.362186 eV Core-core repulsion = 18601.752468 eV Total energy + Delta-G solvation = -3146.609718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24867 -38.67463 -37.58065 -36.54406 -34.76841 -33.24485 -32.66468 -30.92271 -29.63509 -26.52256 -25.77127 -23.45727 -23.02208 -22.79399 -21.78967 -20.86795 -19.28081 -18.47938 -18.00646 -17.35420 -17.15661 -16.55468 -16.42097 -15.61086 -15.57749 -15.21893 -14.99015 -14.63851 -14.35074 -14.21874 -13.70548 -13.43972 -13.24631 -13.14044 -12.95839 -12.83868 -12.72838 -12.65077 -12.40625 -12.21303 -12.04413 -11.83479 -11.52709 -11.32726 -11.25147 -11.00288 -10.84787 -10.70767 -9.90650 -9.11468 -9.01199 -7.94467 -5.23970 0.45088 1.48339 1.49221 1.59001 1.70893 2.05707 2.42117 2.55895 2.97742 3.40192 3.63858 3.76764 3.88103 3.99928 4.04177 4.11842 4.19482 4.23892 4.42421 4.46824 4.52847 4.58319 4.66215 4.68618 4.80307 4.81298 4.85312 4.90206 4.93884 5.07312 5.15237 5.17396 5.28138 5.41228 5.49115 5.50934 5.59229 5.63701 5.83198 6.05263 6.26311 6.64479 7.33726 7.34040 8.06838 8.31187 9.28728 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.005450 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.591188 B = 5136.297395 C = 7294.425825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.132 4.132 6 C -0.114 4.114 7 C 0.516 3.484 8 O -0.573 6.573 9 N -0.706 5.706 10 C 0.179 3.821 11 H 0.057 0.943 12 C 0.151 3.849 13 N -0.742 5.742 14 C -0.243 4.243 15 H 0.079 0.921 16 C -0.072 4.072 17 N -0.968 5.968 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.292 1.292 21 H -0.298 1.298 22 C -0.169 4.169 23 C -0.159 4.159 24 C -0.190 4.190 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.409 0.591 35 H 0.034 0.966 36 H 0.041 0.959 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 9.730 13.266 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C -0.113 4.113 4 C -0.170 4.170 5 C -0.151 4.151 6 C -0.153 4.153 7 C 0.304 3.696 8 O -0.454 6.454 9 N -0.357 5.357 10 C 0.073 3.927 11 H 0.075 0.925 12 C 0.024 3.976 13 N -0.386 5.386 14 C -0.375 4.375 15 H 0.096 0.904 16 C -0.264 4.264 17 N -0.618 5.618 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.220 1.220 21 H -0.225 1.225 22 C -0.188 4.188 23 C -0.196 4.196 24 C -0.227 4.227 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.245 0.755 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.206 0.794 38 H 0.059 0.941 39 H 0.139 0.861 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.220 10.314 12.766 16.725 hybrid contribution -0.569 -1.189 -0.608 1.452 sum 2.651 9.124 12.158 15.431 Atomic orbital electron populations 1.24636 0.95485 1.02995 0.98085 1.22128 0.96118 0.96466 1.01924 1.20831 0.93991 0.95166 1.01318 1.20813 1.00528 0.93420 1.02261 1.22778 0.94336 0.97625 1.00340 1.20836 0.99083 0.98885 0.96454 1.20964 0.79341 0.83271 0.85983 1.90592 1.67024 1.28521 1.59241 1.45953 1.43919 1.15549 1.30280 1.20436 0.89503 0.96012 0.86736 0.92531 1.21022 0.88408 0.90976 0.97205 1.42523 1.03404 1.18553 1.74083 1.19668 0.92706 0.94099 1.31042 0.90355 1.25529 0.95115 1.02446 1.03343 1.69835 0.96957 1.39847 1.55185 0.85096 0.77725 0.79845 0.77205 1.18935 1.21955 1.22519 1.22608 0.97897 1.00888 0.97445 1.22968 1.02889 1.01204 0.92522 1.23276 1.03759 0.91036 1.04656 0.87317 0.86961 0.86638 0.91696 0.90465 0.90765 0.86566 0.87837 0.85453 0.75487 0.94807 0.94129 0.79367 0.94123 0.86056 0.88980 0.87292 0.88191 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 14.07 66.64 0.94 -2.80 16 2 C -0.15 -3.62 9.20 23.43 0.22 -3.41 16 3 C -0.11 -2.75 5.98 -18.71 -0.11 -2.86 16 4 C -0.11 -2.22 9.39 71.24 0.67 -1.56 16 5 C -0.13 -3.36 8.43 24.51 0.21 -3.16 16 6 C -0.11 -2.83 5.93 29.10 0.17 -2.65 16 7 C 0.52 16.42 6.66 87.66 0.58 17.00 16 8 O -0.57 -21.96 13.06 -3.03 -0.04 -22.00 16 9 N -0.71 -21.96 3.05 -442.52 -1.35 -23.32 16 10 C 0.18 6.04 2.59 44.99 0.12 6.15 16 11 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 12 C 0.15 5.77 5.80 86.38 0.50 6.27 16 13 N -0.74 -36.64 5.43 -343.44 -1.87 -38.50 16 14 C -0.24 -13.24 9.99 84.04 0.84 -12.40 16 15 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 16 C -0.07 -4.06 5.50 84.87 0.47 -3.59 16 17 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 18 Si 0.97 45.45 29.55 68.60 2.03 47.47 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 C -0.17 -4.60 5.71 -10.80 -0.06 -4.66 16 23 C -0.16 -3.67 9.74 30.62 0.30 -3.37 16 24 C -0.19 -5.06 9.82 30.62 0.30 -4.76 16 25 H 0.11 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.11 2.04 6.31 -2.91 -0.02 2.02 16 27 H 0.12 2.83 6.00 -2.91 -0.02 2.81 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.25 6.67 -2.39 -0.02 1.24 16 30 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 31 H 0.12 2.93 8.04 -2.91 -0.02 2.91 16 32 H 0.10 2.65 5.41 -2.39 -0.01 2.64 16 33 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.41 11.90 8.60 -92.71 -0.80 11.10 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.37 20.06 7.33 -92.70 -0.68 19.38 16 38 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.12 2.98 8.11 -2.39 -0.02 2.96 16 40 H 0.09 2.13 6.67 -2.39 -0.02 2.11 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.09 3.02 5.01 -2.39 -0.01 3.01 16 Total: -1.00 -66.86 351.13 3.72 -63.13 By element: Atomic # 1 Polarization: 47.76 SS G_CDS: -0.46 Total: 47.30 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.13 Total: -15.79 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -2.94 Total: -120.11 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.04 Total: -22.00 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.86 3.72 -63.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269104430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.002 kcal (2) G-P(sol) polarization free energy of solvation -66.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds