Wall clock time and date at job start Tue Mar 31 2020 00:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32994 * 120.00325 * 2 1 4 4 C 1.47101 * 120.00508 * 172.47534 * 3 2 1 5 5 O 1.21621 * 119.99639 * 352.81254 * 4 3 2 6 6 N 1.34773 * 120.00363 * 172.82064 * 4 3 2 7 7 C 1.46498 * 120.00244 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47021 * 185.00863 * 7 6 4 9 9 N 1.46495 * 112.85298 * 289.72202 * 8 7 6 10 10 C 1.36941 * 120.00302 * 304.24372 * 9 8 7 11 11 H 1.07993 * 119.99737 * 4.80959 * 10 9 8 12 12 C 1.38809 * 119.99761 * 184.80847 * 10 9 8 13 13 N 1.31617 * 119.99702 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00271 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46980 * 90.00043 * 14 12 10 16 16 H 1.48499 * 109.46798 * 209.99534 * 14 12 10 17 17 H 1.48497 * 109.47082 * 329.99699 * 14 12 10 18 18 C 1.53789 * 113.61102 * 158.42430 * 8 7 6 19 19 C 1.53787 * 87.07666 * 220.01803 * 18 8 7 20 20 C 1.53780 * 113.61440 * 60.92440 * 8 7 6 21 21 C 1.50706 * 120.00152 * 179.97438 * 2 1 3 22 22 C 1.52999 * 117.49412 * 0.22589 * 21 2 1 23 23 C 1.52999 * 60.00086 * 252.50920 * 22 21 2 24 24 H 1.09005 * 109.46738 * 90.00484 * 1 2 3 25 25 H 1.08997 * 109.47282 * 210.00204 * 1 2 3 26 26 H 1.09000 * 109.47060 * 330.00910 * 1 2 3 27 27 H 1.08001 * 119.99780 * 352.73982 * 3 2 1 28 28 H 0.97005 * 119.99603 * 359.97438 * 6 4 3 29 29 H 1.08994 * 109.46964 * 305.01126 * 7 6 4 30 30 H 1.09003 * 109.47065 * 65.00457 * 7 6 4 31 31 H 0.97006 * 119.99565 * 124.23770 * 9 8 7 32 32 H 0.97002 * 120.00411 * 180.02562 * 13 12 10 33 33 H 1.09002 * 113.60876 * 334.56293 * 18 8 7 34 34 H 1.08997 * 113.61979 * 105.47111 * 18 8 7 35 35 H 1.08996 * 113.61521 * 270.88285 * 19 18 8 36 36 H 1.09002 * 113.61134 * 139.97891 * 19 18 8 37 37 H 1.08993 * 113.61403 * 254.52160 * 20 8 7 38 38 H 1.09002 * 113.61666 * 25.43287 * 20 8 7 39 39 H 1.08994 * 115.54821 * 145.93222 * 21 2 1 40 40 H 1.08999 * 117.50207 * 359.97438 * 22 21 2 41 41 H 1.08997 * 117.50071 * 145.02179 * 22 21 2 42 42 H 1.09001 * 117.50272 * 252.51493 * 23 22 21 43 43 H 1.09002 * 117.51944 * 107.48128 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6335 1.1573 0.1668 5 8 4.2188 0.1254 0.4349 6 7 4.3240 2.3057 0.0228 7 6 5.7794 2.3113 0.1895 8 6 6.2976 3.7480 0.0986 9 7 6.2091 4.3001 -1.2554 10 6 6.8050 3.6474 -2.3014 11 1 7.2732 2.6873 -2.1424 12 6 6.8072 4.2199 -3.5659 13 7 7.3804 3.5927 -4.5711 14 14 5.9980 5.8809 -3.8407 15 1 6.9952 6.9595 -3.6224 16 1 5.4835 5.9567 -5.2316 17 1 4.8723 6.0470 -2.8866 18 6 7.6713 3.9502 0.7598 19 6 7.1333 5.2918 1.2848 20 6 5.7268 4.6783 1.1819 21 6 2.2606 -1.3051 0.0006 22 6 1.4384 -2.5954 -0.0042 23 6 2.1810 -2.1662 1.2628 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6385 2.0833 -0.1182 28 1 3.8571 3.1286 -0.1912 29 1 6.0352 1.8937 1.1632 30 1 6.2373 1.7095 -0.5955 31 1 5.7283 5.1282 -1.4110 32 1 7.3823 3.9928 -5.4548 33 1 7.8874 3.2282 1.5472 34 1 8.4881 4.0567 0.0459 35 1 7.2971 6.1253 0.6019 36 1 7.4387 5.5146 2.3072 37 1 4.9740 5.3726 0.8087 38 1 5.4114 4.1554 2.0848 39 1 3.2011 -1.3051 -0.5503 40 1 0.3526 -2.5004 -0.0073 41 1 1.8379 -3.4448 -0.5584 42 1 3.0692 -2.7331 1.5421 43 1 1.5841 -1.7885 2.0929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273048245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:54 Heat of formation + Delta-G solvation = 38.782124 kcal Electronic energy + Delta-G solvation = -21917.616448 eV Core-core repulsion = 18772.087009 eV Total energy + Delta-G solvation = -3145.529439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.73338 -38.81179 -37.41418 -33.83190 -33.33984 -33.28086 -30.59789 -28.64351 -26.91828 -25.31280 -23.87186 -23.09384 -22.29569 -21.64867 -20.36649 -18.76071 -18.05124 -17.67375 -16.88277 -15.94859 -15.28319 -15.03954 -14.64150 -14.35634 -14.22317 -13.93625 -13.57545 -13.13880 -13.09487 -12.80377 -12.70944 -12.31251 -12.16505 -11.87778 -11.53140 -11.45101 -11.33377 -11.24054 -10.92296 -10.72867 -10.47295 -10.32367 -10.20014 -10.14022 -9.66220 -9.53415 -9.23774 -8.93737 -8.83649 -8.34507 -7.34343 -5.80535 -3.18205 1.47661 3.30771 3.34905 3.41218 3.59573 3.75428 4.03386 4.53673 4.57562 4.82600 4.99391 5.02724 5.08365 5.10031 5.15070 5.21118 5.33735 5.40766 5.43550 5.45016 5.56312 5.60513 5.67701 5.74478 5.89367 5.97838 6.04530 6.11894 6.13232 6.20483 6.26606 6.32828 6.40748 6.53463 6.65106 6.68365 6.83894 6.88910 7.06152 7.96014 8.06494 8.38288 8.73149 9.15248 9.86744 10.05109 11.37360 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.004653 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.412908 B = 6016.045894 C = 6727.501890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.015 4.015 3 C -0.217 4.217 4 C 0.539 3.461 5 O -0.547 6.547 6 N -0.705 5.705 7 C 0.125 3.875 8 C 0.180 3.820 9 N -0.726 5.726 10 C -0.241 4.241 11 H 0.092 0.908 12 C 0.009 3.991 13 N -0.930 5.930 14 Si 0.884 3.116 15 H -0.285 1.285 16 H -0.292 1.292 17 H -0.279 1.279 18 C -0.152 4.152 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.110 4.110 22 C -0.193 4.193 23 C -0.155 4.155 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.125 0.875 28 H 0.398 0.602 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.364 0.636 32 H 0.260 0.740 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 -3.734 12.797 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.017 4.017 3 C -0.238 4.238 4 C 0.328 3.672 5 O -0.428 6.428 6 N -0.354 5.354 7 C -0.001 4.001 8 C 0.087 3.913 9 N -0.368 5.368 10 C -0.370 4.370 11 H 0.110 0.890 12 C -0.187 4.187 13 N -0.577 5.577 14 Si 0.714 3.286 15 H -0.211 1.211 16 H -0.218 1.218 17 H -0.205 1.205 18 C -0.192 4.192 19 C -0.170 4.170 20 C -0.184 4.184 21 C -0.128 4.128 22 C -0.230 4.230 23 C -0.192 4.192 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.143 0.857 28 H 0.232 0.768 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.198 0.802 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.951 -4.594 12.803 18.106 hybrid contribution -0.719 1.758 -0.614 1.997 sum -12.670 -2.835 12.189 17.809 Atomic orbital electron populations 1.20983 0.91439 1.02936 1.02884 1.21717 0.94936 0.93425 0.91644 1.22435 0.93997 0.98464 1.08873 1.18466 0.87553 0.83584 0.77600 1.90724 1.71296 1.31561 1.49178 1.45707 1.08547 1.10521 1.70611 1.21707 0.79259 0.98478 1.00651 1.20733 0.94549 0.90618 0.85389 1.42465 1.64731 1.27551 1.02027 1.18954 1.28922 1.02651 0.86502 0.89007 1.24655 1.00337 0.97942 0.95807 1.69696 1.48588 1.38976 1.00479 0.86581 0.79317 0.85635 0.77042 1.21122 1.21833 1.20549 1.23388 0.99576 0.96430 0.99839 1.22673 0.96337 0.97898 1.00065 1.23204 0.97112 0.99072 0.99004 1.21375 1.00459 0.87833 1.03088 1.23135 0.98737 0.98830 1.02279 1.22759 1.02372 1.02803 0.91311 0.90446 0.90999 0.91166 0.85749 0.76850 0.92327 0.90915 0.80240 0.93020 0.91059 0.90418 0.90376 0.92448 0.91933 0.90028 0.85046 0.88828 0.88773 0.88648 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.52 36.01 0.34 -0.77 16 2 C -0.02 -0.19 5.80 -101.16 -0.59 -0.78 16 3 C -0.22 -2.96 9.62 -37.81 -0.36 -3.32 16 4 C 0.54 9.22 7.65 -12.67 -0.10 9.12 16 5 O -0.55 -10.78 13.41 5.26 0.07 -10.71 16 6 N -0.71 -11.84 5.37 -61.50 -0.33 -12.17 16 7 C 0.12 2.29 5.05 -4.05 -0.02 2.27 16 8 C 0.18 3.22 0.85 -131.01 -0.11 3.11 16 9 N -0.73 -15.86 5.03 -46.48 -0.23 -16.10 16 10 C -0.24 -6.45 9.86 -15.06 -0.15 -6.60 16 11 H 0.09 2.71 7.23 -52.49 -0.38 2.33 16 12 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 13 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 14 Si 0.88 21.42 27.78 -169.99 -4.72 16.70 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 17 H -0.28 -6.25 6.45 56.52 0.36 -5.88 16 18 C -0.15 -2.55 7.37 -25.91 -0.19 -2.75 16 19 C -0.13 -1.95 7.99 -25.91 -0.21 -2.16 16 20 C -0.15 -2.12 6.97 -25.92 -0.18 -2.30 16 21 C -0.11 -1.49 4.25 -91.77 -0.39 -1.88 16 22 C -0.19 -2.04 9.80 -26.73 -0.26 -2.30 16 23 C -0.16 -1.83 10.23 -26.73 -0.27 -2.11 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.56 6.31 -51.93 -0.33 0.23 16 26 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.40 6.11 8.28 -40.82 -0.34 5.77 16 29 H 0.06 1.02 7.96 -51.93 -0.41 0.61 16 30 H 0.07 1.60 6.97 -51.93 -0.36 1.24 16 31 H 0.36 7.85 5.67 -40.82 -0.23 7.62 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.07 1.07 7.98 -51.93 -0.41 0.66 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.13 2.20 6.41 -51.93 -0.33 1.86 16 40 H 0.09 0.83 6.27 -51.93 -0.33 0.50 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -31.36 347.40 -8.73 -40.09 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -6.94 Total: 15.23 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.59 Total: -10.31 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.21 Total: -56.24 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.72 Total: 16.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.36 -8.73 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273048245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.870 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds