Wall clock time and date at job start Tue Mar 31 2020 00:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32994 * 120.00325 * 2 1 4 4 C 1.47101 * 120.00508 * 172.47534 * 3 2 1 5 5 O 1.21621 * 119.99639 * 352.81254 * 4 3 2 6 6 N 1.34773 * 120.00363 * 172.82064 * 4 3 2 7 7 C 1.46498 * 120.00244 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47021 * 185.00863 * 7 6 4 9 9 N 1.46495 * 112.85298 * 289.72202 * 8 7 6 10 10 C 1.36941 * 120.00302 * 304.24372 * 9 8 7 11 11 H 1.07993 * 119.99737 * 4.80959 * 10 9 8 12 12 C 1.38809 * 119.99761 * 184.80847 * 10 9 8 13 13 N 1.31617 * 119.99702 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00271 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46980 * 90.00043 * 14 12 10 16 16 H 1.48499 * 109.46798 * 209.99534 * 14 12 10 17 17 H 1.48497 * 109.47082 * 329.99699 * 14 12 10 18 18 C 1.53789 * 113.61102 * 158.42430 * 8 7 6 19 19 C 1.53787 * 87.07666 * 220.01803 * 18 8 7 20 20 C 1.53780 * 113.61440 * 60.92440 * 8 7 6 21 21 C 1.50706 * 120.00152 * 179.97438 * 2 1 3 22 22 C 1.52999 * 117.49412 * 0.22589 * 21 2 1 23 23 C 1.52999 * 60.00086 * 252.50920 * 22 21 2 24 24 H 1.09005 * 109.46738 * 90.00484 * 1 2 3 25 25 H 1.08997 * 109.47282 * 210.00204 * 1 2 3 26 26 H 1.09000 * 109.47060 * 330.00910 * 1 2 3 27 27 H 1.08001 * 119.99780 * 352.73982 * 3 2 1 28 28 H 0.97005 * 119.99603 * 359.97438 * 6 4 3 29 29 H 1.08994 * 109.46964 * 305.01126 * 7 6 4 30 30 H 1.09003 * 109.47065 * 65.00457 * 7 6 4 31 31 H 0.97006 * 119.99565 * 124.23770 * 9 8 7 32 32 H 0.97002 * 120.00411 * 180.02562 * 13 12 10 33 33 H 1.09002 * 113.60876 * 334.56293 * 18 8 7 34 34 H 1.08997 * 113.61979 * 105.47111 * 18 8 7 35 35 H 1.08996 * 113.61521 * 270.88285 * 19 18 8 36 36 H 1.09002 * 113.61134 * 139.97891 * 19 18 8 37 37 H 1.08993 * 113.61403 * 254.52160 * 20 8 7 38 38 H 1.09002 * 113.61666 * 25.43287 * 20 8 7 39 39 H 1.08994 * 115.54821 * 145.93222 * 21 2 1 40 40 H 1.08999 * 117.50207 * 359.97438 * 22 21 2 41 41 H 1.08997 * 117.50071 * 145.02179 * 22 21 2 42 42 H 1.09001 * 117.50272 * 252.51493 * 23 22 21 43 43 H 1.09002 * 117.51944 * 107.48128 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6335 1.1573 0.1668 5 8 4.2188 0.1254 0.4349 6 7 4.3240 2.3057 0.0228 7 6 5.7794 2.3113 0.1895 8 6 6.2976 3.7480 0.0986 9 7 6.2091 4.3001 -1.2554 10 6 6.8050 3.6474 -2.3014 11 1 7.2732 2.6873 -2.1424 12 6 6.8072 4.2199 -3.5659 13 7 7.3804 3.5927 -4.5711 14 14 5.9980 5.8809 -3.8407 15 1 6.9952 6.9595 -3.6224 16 1 5.4835 5.9567 -5.2316 17 1 4.8723 6.0470 -2.8866 18 6 7.6713 3.9502 0.7598 19 6 7.1333 5.2918 1.2848 20 6 5.7268 4.6783 1.1819 21 6 2.2606 -1.3051 0.0006 22 6 1.4384 -2.5954 -0.0042 23 6 2.1810 -2.1662 1.2628 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6385 2.0833 -0.1182 28 1 3.8571 3.1286 -0.1912 29 1 6.0352 1.8937 1.1632 30 1 6.2373 1.7095 -0.5955 31 1 5.7283 5.1282 -1.4110 32 1 7.3823 3.9928 -5.4548 33 1 7.8874 3.2282 1.5472 34 1 8.4881 4.0567 0.0459 35 1 7.2971 6.1253 0.6019 36 1 7.4387 5.5146 2.3072 37 1 4.9740 5.3726 0.8087 38 1 5.4114 4.1554 2.0848 39 1 3.2011 -1.3051 -0.5503 40 1 0.3526 -2.5004 -0.0073 41 1 1.8379 -3.4448 -0.5584 42 1 3.0692 -2.7331 1.5421 43 1 1.5841 -1.7885 2.0929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273048245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:53 Heat of formation + Delta-G solvation = 18.124562 kcal Electronic energy + Delta-G solvation = -21918.512227 eV Core-core repulsion = 18772.087009 eV Total energy + Delta-G solvation = -3146.425218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.07343 -40.12066 -38.50552 -35.34038 -35.15930 -34.28651 -32.58790 -29.80043 -28.09686 -26.67451 -25.62583 -24.30440 -23.22756 -22.97869 -21.67007 -20.13391 -19.67573 -19.33682 -18.04568 -17.19985 -16.69118 -16.37550 -16.11898 -15.88797 -15.61253 -15.28341 -14.76103 -14.64496 -14.27905 -14.04936 -13.90673 -13.73615 -13.19611 -13.15844 -13.11191 -12.99642 -12.66568 -12.43482 -12.16503 -12.14065 -11.82960 -11.68996 -11.58548 -11.55095 -11.29721 -10.97168 -10.89901 -10.48028 -10.03549 -9.63390 -9.31090 -8.00264 -5.35420 0.42192 1.36373 1.42273 1.48738 2.32151 2.48146 2.49113 3.07046 3.29338 3.43309 3.63832 3.74403 3.86882 3.95749 4.02684 4.05034 4.16847 4.21790 4.28240 4.45510 4.60009 4.67674 4.73217 4.75518 4.83078 4.85261 4.89921 4.97129 4.98707 5.10287 5.11467 5.24596 5.27558 5.29848 5.38983 5.46033 5.56038 5.66098 5.70340 5.83482 6.23600 6.75881 7.09579 7.41536 7.83073 8.03446 9.21615 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.004653 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.412908 B = 6016.045894 C = 6727.501890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.000 4.000 3 C -0.241 4.241 4 C 0.529 3.471 5 O -0.584 6.584 6 N -0.702 5.702 7 C 0.136 3.864 8 C 0.161 3.839 9 N -0.723 5.723 10 C -0.216 4.216 11 H 0.047 0.953 12 C -0.065 4.065 13 N -0.988 5.988 14 Si 0.958 3.042 15 H -0.281 1.281 16 H -0.302 1.302 17 H -0.243 1.243 18 C -0.156 4.156 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.166 4.166 23 C -0.156 4.156 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.407 0.593 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.370 0.630 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.008 -2.045 15.114 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.002 4.002 3 C -0.261 4.261 4 C 0.320 3.680 5 O -0.467 6.467 6 N -0.351 5.351 7 C 0.010 3.990 8 C 0.070 3.930 9 N -0.366 5.366 10 C -0.347 4.347 11 H 0.065 0.935 12 C -0.256 4.256 13 N -0.639 5.639 14 Si 0.785 3.215 15 H -0.208 1.208 16 H -0.229 1.229 17 H -0.167 1.167 18 C -0.197 4.197 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.203 4.203 23 C -0.193 4.193 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.171 0.829 28 H 0.242 0.758 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.205 0.795 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.458 -2.883 15.190 21.864 hybrid contribution 0.438 1.009 -1.277 1.685 sum -15.020 -1.874 13.913 20.560 Atomic orbital electron populations 1.21082 0.88013 1.04683 1.04126 1.22128 0.97105 0.92216 0.88704 1.22480 0.91675 1.00380 1.11603 1.19197 0.89254 0.82879 0.76657 1.90711 1.72441 1.32731 1.50830 1.45662 1.07664 1.11113 1.70706 1.21449 0.80342 0.98116 0.99119 1.21076 0.96353 0.90940 0.84634 1.42319 1.64301 1.27422 1.02539 1.18777 1.27093 1.00873 0.87946 0.93474 1.25506 1.02061 1.02584 0.95467 1.69909 1.51521 1.41442 1.00993 0.85376 0.79199 0.79970 0.76940 1.20766 1.22941 1.16715 1.23426 0.97576 0.98994 0.99684 1.22624 0.95904 0.95897 1.01438 1.23134 0.97342 0.97839 0.97821 1.21275 1.00169 0.90216 1.04505 1.23238 0.99884 0.96720 1.00452 1.22808 1.02581 1.02184 0.91735 0.89166 0.89407 0.89312 0.82853 0.75771 0.91411 0.96181 0.79504 0.93553 0.89182 0.93848 0.91264 0.89363 0.90395 0.87683 0.89396 0.86004 0.88517 0.89769 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.52 71.24 0.68 -1.00 16 2 C 0.00 0.01 5.80 -17.61 -0.10 -0.09 16 3 C -0.24 -6.27 9.62 23.43 0.23 -6.05 16 4 C 0.53 18.41 7.65 86.57 0.66 19.08 16 5 O -0.58 -24.27 13.41 -4.10 -0.05 -24.32 16 6 N -0.70 -23.61 5.37 -466.73 -2.51 -26.12 16 7 C 0.14 5.16 5.05 86.38 0.44 5.59 16 8 C 0.16 5.69 0.85 4.13 0.00 5.69 16 9 N -0.72 -31.47 5.03 -300.97 -1.51 -32.99 16 10 C -0.22 -12.06 9.86 84.03 0.83 -11.23 16 11 H 0.05 3.01 7.23 -2.91 -0.02 2.99 16 12 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 13 N -0.99 -64.04 13.97 21.65 0.30 -63.74 16 14 Si 0.96 44.47 27.78 68.60 1.91 46.37 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 17 H -0.24 -9.71 6.45 99.48 0.64 -9.07 16 18 C -0.16 -5.19 7.37 31.13 0.23 -4.96 16 19 C -0.12 -3.20 7.99 31.12 0.25 -2.95 16 20 C -0.12 -3.15 6.97 31.12 0.22 -2.93 16 21 C -0.14 -3.88 4.25 -11.54 -0.05 -3.92 16 22 C -0.17 -3.20 9.80 30.59 0.30 -2.90 16 23 C -0.16 -3.55 10.23 30.59 0.31 -3.24 16 24 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.09 0.95 6.31 -2.39 -0.02 0.93 16 26 H 0.09 0.94 8.07 -2.39 -0.02 0.92 16 27 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.41 11.95 8.28 -92.70 -0.77 11.18 16 29 H 0.07 2.41 7.96 -2.39 -0.02 2.39 16 30 H 0.02 0.96 6.97 -2.39 -0.02 0.94 16 31 H 0.37 15.17 5.67 -92.70 -0.53 14.64 16 32 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.09 2.62 7.98 -2.39 -0.02 2.60 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 38 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 39 H 0.09 3.17 6.41 -2.39 -0.02 3.15 16 40 H 0.12 1.67 6.27 -2.39 -0.01 1.66 16 41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -74.44 347.40 2.25 -72.20 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -0.35 Total: 40.86 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 4.46 Total: -12.26 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -3.72 Total: -122.84 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.32 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.91 Total: 46.37 kcal Total: -74.44 2.25 -72.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273048245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.321 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds