Wall clock time and date at job start Tue Mar 31 2020 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32993 * 119.99897 * 2 1 4 4 C 1.47107 * 120.00145 * 352.74405 * 3 2 1 5 5 O 1.21606 * 119.99671 * 353.41712 * 4 3 2 6 6 N 1.34777 * 119.99958 * 173.42787 * 4 3 2 7 7 C 1.46503 * 119.99683 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46657 * 185.02646 * 7 6 4 9 9 N 1.46502 * 112.90621 * 293.62746 * 8 7 6 10 10 C 1.36942 * 120.00199 * 305.88570 * 9 8 7 11 11 H 1.08000 * 119.99499 * 3.45439 * 10 9 8 12 12 C 1.38810 * 119.99982 * 183.44393 * 10 9 8 13 13 N 1.31610 * 120.00357 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99860 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47508 * 90.00145 * 14 12 10 16 16 H 1.48495 * 109.47142 * 210.00337 * 14 12 10 17 17 H 1.48507 * 109.46858 * 330.00035 * 14 12 10 18 18 C 1.53780 * 113.61926 * 64.87997 * 8 7 6 19 19 C 1.53788 * 87.07861 * 139.98093 * 18 8 7 20 20 C 1.53778 * 87.08131 * 334.56779 * 19 18 8 21 21 C 1.50700 * 120.00174 * 179.97438 * 2 1 3 22 22 C 1.52998 * 117.49467 * 8.74667 * 21 2 1 23 23 C 1.53004 * 117.49593 * 300.08913 * 21 2 1 24 24 H 1.09003 * 109.47005 * 84.40346 * 1 2 3 25 25 H 1.08998 * 109.47723 * 204.40829 * 1 2 3 26 26 H 1.09005 * 109.47249 * 324.40700 * 1 2 3 27 27 H 1.08001 * 119.99882 * 172.73832 * 3 2 1 28 28 H 0.96997 * 120.00101 * 359.97438 * 6 4 3 29 29 H 1.09001 * 109.46941 * 65.02781 * 7 6 4 30 30 H 1.08999 * 109.47301 * 305.02382 * 7 6 4 31 31 H 0.96998 * 120.00329 * 125.89081 * 9 8 7 32 32 H 0.97006 * 120.00396 * 179.97438 * 13 12 10 33 33 H 1.09004 * 113.61269 * 25.43262 * 18 8 7 34 34 H 1.08995 * 113.61496 * 254.53048 * 18 8 7 35 35 H 1.08991 * 113.61391 * 89.12002 * 19 18 8 36 36 H 1.09004 * 113.61093 * 220.01973 * 19 18 8 37 37 H 1.09002 * 113.61136 * 139.98624 * 20 19 18 38 38 H 1.09003 * 113.61594 * 270.80112 * 20 19 18 39 39 H 1.08996 * 115.55219 * 154.41739 * 21 2 1 40 40 H 1.09003 * 117.50571 * 0.02562 * 22 21 2 41 41 H 1.09002 * 117.49529 * 145.01645 * 22 21 2 42 42 H 1.08999 * 117.49573 * 214.97176 * 23 21 2 43 43 H 1.08998 * 117.49866 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4452 2.4207 -0.1609 5 8 0.2557 2.4122 -0.4132 6 7 2.0979 3.5924 -0.0289 7 6 1.3742 4.8561 -0.1897 8 6 2.3619 6.0222 -0.1157 9 7 2.9723 6.1694 1.2080 10 6 2.1796 6.2797 2.3192 11 1 1.1064 6.2024 2.2266 12 6 2.7556 6.4908 3.5644 13 7 4.0634 6.5853 3.6771 14 14 1.6743 6.6407 5.0802 15 1 1.4708 5.2967 5.6781 16 1 2.3322 7.5290 6.0717 17 1 0.3600 7.2156 4.6959 18 6 3.3791 6.0423 -1.2688 19 6 3.1990 7.5693 -1.2966 20 6 1.8063 7.3373 -0.6873 21 6 2.2605 -1.3051 0.0006 22 6 1.4520 -2.5876 -0.2052 23 6 2.0245 -2.2565 1.1753 24 1 -0.3633 0.1002 -1.0228 25 1 -0.3634 -0.9358 0.4246 26 1 -0.3634 0.8357 0.5981 27 1 3.2454 1.1555 0.1182 28 1 3.0467 3.5991 0.1726 29 1 0.6349 4.9550 0.6051 30 1 0.8717 4.8665 -1.1568 31 1 3.9380 6.1887 1.2973 32 1 4.4659 6.7332 4.5473 33 1 3.0255 5.5443 -2.1716 34 1 4.3796 5.7259 -0.9739 35 1 3.8820 8.1016 -0.6348 36 1 3.1712 7.9874 -2.3029 37 1 1.5370 8.0664 0.0769 38 1 1.0224 7.1948 -1.4312 39 1 3.2637 -1.2689 -0.4241 40 1 0.3752 -2.4875 -0.3415 41 1 1.9236 -3.3953 -0.7650 42 1 2.8723 -2.8467 1.5232 43 1 1.3245 -1.9383 1.9479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273048246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:56 Heat of formation + Delta-G solvation = 15.065773 kcal Electronic energy + Delta-G solvation = -21750.760685 eV Core-core repulsion = 18604.202828 eV Total energy + Delta-G solvation = -3146.557857 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04057 -40.03805 -38.71358 -35.37840 -35.17893 -34.06296 -31.95675 -29.61698 -27.97283 -26.66913 -25.87480 -24.81056 -23.21653 -22.98277 -21.41307 -19.89049 -19.42699 -19.05638 -17.89636 -17.33318 -16.79555 -16.23881 -16.16705 -15.81504 -15.79262 -15.30600 -14.97896 -14.60082 -14.30691 -14.03050 -13.86558 -13.45917 -13.10729 -12.95131 -12.93583 -12.86663 -12.64626 -12.45117 -12.21043 -12.13596 -11.99112 -11.82600 -11.57821 -11.43095 -11.32674 -10.94171 -10.86619 -10.51107 -10.07348 -9.62734 -8.99830 -7.94680 -5.21354 0.38397 1.43778 1.45148 1.52319 2.30699 2.44467 2.54402 3.02874 3.37255 3.61240 3.74673 3.81407 3.89507 3.96735 3.98565 4.06413 4.13501 4.19551 4.25047 4.33863 4.62558 4.69348 4.76507 4.82779 4.84344 4.87914 4.90824 4.98532 5.00103 5.11103 5.12082 5.15752 5.26568 5.31751 5.42635 5.52175 5.55253 5.58448 5.66325 5.72528 6.29095 6.74111 7.35718 7.37571 8.09125 8.33363 9.27855 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.004683 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.783922 B = 5977.741144 C = 7145.254870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.002 3.998 3 C -0.239 4.239 4 C 0.533 3.467 5 O -0.586 6.586 6 N -0.700 5.700 7 C 0.134 3.866 8 C 0.160 3.840 9 N -0.705 5.705 10 C -0.223 4.223 11 H 0.064 0.936 12 C -0.064 4.064 13 N -0.962 5.962 14 Si 0.956 3.044 15 H -0.293 1.293 16 H -0.294 1.294 17 H -0.276 1.276 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.154 4.154 21 C -0.146 4.146 22 C -0.161 4.161 23 C -0.165 4.165 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.143 0.857 28 H 0.406 0.594 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.378 0.622 32 H 0.250 0.750 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.339 -14.214 -11.449 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.000 4.000 3 C -0.260 4.260 4 C 0.324 3.676 5 O -0.470 6.470 6 N -0.349 5.349 7 C 0.008 3.992 8 C 0.068 3.932 9 N -0.344 5.344 10 C -0.355 4.355 11 H 0.082 0.918 12 C -0.257 4.257 13 N -0.613 5.613 14 Si 0.787 3.213 15 H -0.220 1.220 16 H -0.221 1.221 17 H -0.202 1.202 18 C -0.164 4.164 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.164 4.164 22 C -0.198 4.198 23 C -0.202 4.202 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.161 0.839 28 H 0.241 0.759 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.211 0.789 32 H 0.059 0.941 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.301 -14.147 -11.497 18.374 hybrid contribution 0.255 0.663 1.525 1.683 sum -2.046 -13.484 -9.972 16.895 Atomic orbital electron populations 1.21048 0.91530 1.02081 1.02845 1.21985 0.95896 0.93318 0.88847 1.22358 1.01208 0.90951 1.11462 1.19010 0.86666 0.85242 0.76692 1.90690 1.16576 1.88308 1.51431 1.45681 1.13500 1.05121 1.70549 1.21518 0.94763 0.83435 0.99474 1.21091 0.93789 0.92432 0.85854 1.42123 1.05245 1.86735 1.00295 1.19295 0.90536 1.38999 0.86640 0.91791 1.25288 0.96647 1.03874 0.99894 1.69763 1.09527 1.58505 1.23476 0.85397 0.78373 0.77003 0.80563 1.22049 1.22054 1.20150 1.23113 0.98726 0.96990 0.97584 1.22569 0.96450 0.96107 1.00764 1.23440 0.97748 0.98547 0.99764 1.21328 1.00753 0.87859 1.06431 1.23181 1.00427 0.96878 0.99305 1.23084 1.04179 1.01380 0.91588 0.90810 0.90602 0.92157 0.83885 0.75913 0.95203 0.91211 0.78866 0.94130 0.87938 0.91504 0.92065 0.89612 0.93698 0.88989 0.85395 0.88084 0.86389 0.86612 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 7.90 71.23 0.56 -2.54 16 2 C 0.00 0.04 5.81 -17.62 -0.10 -0.06 16 3 C -0.24 -6.70 9.67 23.43 0.23 -6.47 16 4 C 0.53 18.77 7.61 86.57 0.66 19.43 16 5 O -0.59 -23.70 13.30 -4.05 -0.05 -23.75 16 6 N -0.70 -24.47 5.41 -466.71 -2.53 -27.00 16 7 C 0.13 5.02 4.91 86.38 0.42 5.45 16 8 C 0.16 5.89 0.81 4.13 0.00 5.89 16 9 N -0.70 -32.98 5.23 -300.96 -1.58 -34.55 16 10 C -0.22 -11.98 9.42 84.03 0.79 -11.19 16 11 H 0.06 3.49 6.96 -2.91 -0.02 3.47 16 12 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 13 N -0.96 -56.95 13.06 21.65 0.28 -56.66 16 14 Si 0.96 46.57 29.55 68.60 2.03 48.59 16 15 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 C -0.13 -3.68 7.15 31.12 0.22 -3.46 16 19 C -0.12 -3.60 7.99 31.12 0.25 -3.36 16 20 C -0.15 -5.24 7.39 31.12 0.23 -5.01 16 21 C -0.15 -2.59 6.01 -11.54 -0.07 -2.66 16 22 C -0.16 -2.20 9.77 30.62 0.30 -1.91 16 23 C -0.17 -2.51 10.11 30.62 0.31 -2.20 16 24 H 0.07 1.97 8.03 -2.39 -0.02 1.95 16 25 H 0.08 1.55 6.30 -2.39 -0.02 1.54 16 26 H 0.06 1.98 6.17 -2.38 -0.01 1.97 16 27 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.41 13.45 8.41 -92.71 -0.78 12.67 16 29 H 0.03 1.32 7.02 -2.39 -0.02 1.30 16 30 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 31 H 0.38 18.94 7.83 -92.71 -0.73 18.21 16 32 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 33 H 0.10 2.53 8.10 -2.39 -0.02 2.51 16 34 H 0.07 1.95 8.10 -2.39 -0.02 1.94 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 2.66 8.04 -2.39 -0.02 2.64 16 39 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 1.40 6.42 -2.39 -0.02 1.38 16 41 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -65.24 350.68 1.93 -63.31 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -0.49 Total: 41.30 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 4.27 Total: -11.23 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -3.82 Total: -118.22 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -65.24 1.93 -63.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273048246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.371 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds