Wall clock time and date at job start Tue Mar 31 2020 00:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99927 * 2 1 4 4 N 1.46497 * 109.47339 * 124.99719 * 3 2 1 5 5 C 1.46816 * 124.36519 * 89.99776 * 4 3 2 6 6 C 1.54587 * 105.49771 * 163.07822 * 5 4 3 7 7 C 1.54123 * 101.65242 * 24.98292 * 6 5 4 8 8 C 1.52546 * 110.08162 * 94.64633 * 7 6 5 9 9 C 1.53148 * 109.31555 * 178.10710 * 8 7 6 10 10 N 1.46848 * 109.45467 * 301.74317 * 9 8 7 11 11 C 1.46901 * 110.99528 * 186.35277 * 10 9 8 12 12 C 1.50703 * 109.47410 * 65.64553 * 11 10 9 13 13 H 1.08001 * 119.99366 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00116 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99715 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99956 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47084 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.46921 * 120.00064 * 16 14 12 19 19 H 1.48497 * 109.46827 * 240.00403 * 16 14 12 20 20 C 1.46856 * 111.31188 * 62.17582 * 10 9 8 21 21 C 1.52534 * 110.08650 * 216.69374 * 7 6 5 22 22 C 1.34577 * 124.36058 * 269.99655 * 4 3 2 23 23 O 1.21279 * 125.02761 * 0.68388 * 22 4 3 24 24 H 1.07994 * 119.99706 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99921 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00113 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46894 * 4.99354 * 3 2 1 28 28 H 1.09003 * 109.46901 * 244.99580 * 3 2 1 29 29 H 1.09007 * 110.23965 * 44.07418 * 5 4 3 30 30 H 1.08997 * 110.31425 * 282.12769 * 5 4 3 31 31 H 1.09006 * 110.99067 * 266.89012 * 6 5 4 32 32 H 1.08997 * 110.98907 * 143.07838 * 6 5 4 33 33 H 1.08995 * 109.49479 * 298.06222 * 8 7 6 34 34 H 1.09004 * 109.49736 * 58.15429 * 8 7 6 35 35 H 1.08993 * 109.47231 * 61.74041 * 9 8 7 36 36 H 1.09000 * 109.46946 * 181.74710 * 9 8 7 37 37 H 1.09001 * 109.46963 * 185.64486 * 11 10 9 38 38 H 1.09003 * 109.47402 * 305.64047 * 11 10 9 39 39 H 0.96999 * 119.99362 * 179.97438 * 15 14 12 40 40 H 1.09007 * 109.47545 * 177.82831 * 20 10 9 41 41 H 1.08997 * 109.47945 * 57.81035 * 20 10 9 42 42 H 1.09005 * 109.50034 * 301.83676 * 21 7 6 43 43 H 1.08999 * 109.49847 * 61.90309 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3797 0.8508 1.0764 6 6 5.0785 1.4620 2.3125 7 6 3.8868 1.6898 3.2629 8 6 3.7370 0.5027 4.2090 9 6 2.5790 0.7681 5.1754 10 7 2.8387 2.0058 5.9219 11 6 1.8250 2.2143 6.9644 12 6 1.9413 1.1282 8.0027 13 1 2.6928 0.3597 7.8982 14 6 1.0882 1.1157 9.0858 15 7 0.1734 2.0520 9.2131 16 14 1.2319 -0.2309 10.3724 17 1 2.3320 -1.1562 9.9997 18 1 1.5229 0.3775 11.6953 19 1 -0.0454 -0.9849 10.4444 20 6 2.9158 3.1648 5.0233 21 6 4.0854 2.9800 4.0520 22 6 2.6879 1.8010 2.3552 23 8 1.6080 2.2473 2.6797 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4025 -0.9314 29 1 4.8624 1.1950 0.1617 30 1 4.4047 -0.2377 1.1287 31 1 5.5630 2.4054 2.0604 32 1 5.7932 0.7608 2.7434 33 1 3.5301 -0.3985 3.6320 34 1 4.6594 0.3694 4.7744 35 1 1.6518 0.8715 4.6118 36 1 2.4895 -0.0649 5.8727 37 1 1.9819 3.1850 7.4348 38 1 0.8316 2.1840 6.5165 39 1 -0.4270 2.0429 9.9749 40 1 3.0705 4.0701 5.6104 41 1 1.9863 3.2509 4.4606 42 1 5.0185 2.9237 4.6127 43 1 4.1246 3.8247 3.3643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:01 Heat of formation + Delta-G solvation = -8.688979 kcal Electronic energy + Delta-G solvation = -22756.328005 eV Core-core repulsion = 19608.740064 eV Total energy + Delta-G solvation = -3147.587940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06404 -37.47577 -36.40034 -35.06035 -33.14636 -31.95546 -30.36772 -29.50980 -26.96551 -26.48310 -24.59169 -22.75150 -21.90263 -21.46597 -20.23349 -19.85233 -18.38515 -16.72204 -16.18577 -16.15686 -15.34777 -14.87076 -14.75655 -14.29617 -14.02384 -13.94025 -13.66657 -13.36912 -13.28170 -12.84635 -12.65972 -12.18582 -12.01772 -11.93314 -11.76690 -11.57468 -11.45278 -11.35959 -11.02554 -10.67854 -10.55309 -10.48595 -10.06730 -9.95495 -9.76698 -9.54085 -9.18776 -8.99499 -8.73071 -8.33779 -6.98402 -5.92987 -3.93839 1.99656 2.78720 3.13273 3.36215 3.42998 3.47816 4.32725 4.44050 4.50283 4.69177 4.75318 4.92152 4.97405 5.08585 5.16578 5.25661 5.30964 5.40607 5.42486 5.52491 5.71050 5.72613 5.75306 5.84992 6.01329 6.05265 6.13075 6.25838 6.27203 6.41586 6.45388 6.53359 6.61639 6.71609 6.84810 6.85279 7.18049 7.46550 7.55583 7.91500 8.23726 8.35281 8.39300 8.70902 9.14485 9.69680 11.18056 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.004619 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.372293 B = 6060.442408 C = 6512.488526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.181 4.181 3 C 0.155 3.845 4 N -0.625 5.625 5 C 0.105 3.895 6 C -0.126 4.126 7 C -0.088 4.088 8 C -0.092 4.092 9 C 0.061 3.939 10 N -0.533 5.533 11 C 0.194 3.806 12 C -0.503 4.503 13 H 0.063 0.937 14 C 0.053 3.947 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.042 3.958 21 C -0.089 4.089 22 C 0.529 3.471 23 O -0.509 6.509 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.082 0.918 37 H 0.028 0.972 38 H -0.009 1.009 39 H 0.259 0.741 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.320 -2.751 -20.520 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.033 3.967 4 N -0.360 5.360 5 C -0.018 4.018 6 C -0.164 4.164 7 C -0.092 4.092 8 C -0.131 4.131 9 C -0.068 4.068 10 N -0.258 5.258 11 C 0.069 3.931 12 C -0.542 4.542 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.087 4.087 21 C -0.127 4.127 22 C 0.316 3.684 23 O -0.383 6.383 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.008 0.992 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.997 -2.480 -20.053 22.119 hybrid contribution -0.838 -0.725 0.267 1.140 sum 8.158 -3.206 -19.787 21.641 Atomic orbital electron populations 1.23910 0.95905 1.02177 0.98498 1.23260 0.96370 0.98765 1.01674 1.20405 0.91952 0.95933 0.88382 1.48387 1.12993 1.63263 1.11373 1.22071 0.81339 0.99054 0.99332 1.22718 0.97126 1.02199 0.94367 1.21071 0.93172 0.99699 0.95232 1.21481 1.01419 0.94208 0.95957 1.21950 0.94694 0.95081 0.95037 1.62038 1.51029 1.00455 1.12307 1.19671 0.87596 0.97541 0.88327 1.21224 1.16131 1.10738 1.06090 0.91897 1.24998 0.95396 0.96182 0.98163 1.69985 1.20008 1.33631 1.30254 0.86472 0.77756 0.81898 0.81468 1.19705 1.21072 1.21215 1.22172 0.97323 0.94861 0.94309 1.21394 1.00533 0.93661 0.97099 1.20793 0.89301 0.76065 0.82198 1.90700 1.25801 1.44820 1.76962 0.88290 0.88283 0.87364 0.89795 0.89927 0.90763 0.91411 0.90019 0.89007 0.92437 0.90144 0.95319 0.89961 0.95358 0.99164 0.93099 0.91808 0.93198 0.90489 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 14.32 29.01 0.42 -1.35 16 2 C -0.18 -1.90 9.85 -36.03 -0.35 -2.25 16 3 C 0.15 1.61 6.37 -5.20 -0.03 1.58 16 4 N -0.63 -7.53 2.92 -173.84 -0.51 -8.03 16 5 C 0.11 0.91 7.36 -3.04 -0.02 0.88 16 6 C -0.13 -1.19 6.21 -25.31 -0.16 -1.35 16 7 C -0.09 -1.25 0.55 -155.50 -0.09 -1.34 16 8 C -0.09 -1.46 4.77 -26.89 -0.13 -1.58 16 9 C 0.06 1.29 5.08 -3.78 -0.02 1.27 16 10 N -0.53 -12.31 4.63 -235.96 -1.09 -13.40 16 11 C 0.19 5.41 4.72 -4.97 -0.02 5.38 16 12 C -0.50 -14.69 8.42 -34.44 -0.29 -14.98 16 13 H 0.06 1.80 7.11 -52.49 -0.37 1.43 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 16 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C 0.04 0.85 5.24 -3.77 -0.02 0.83 16 21 C -0.09 -1.37 4.77 -26.89 -0.13 -1.50 16 22 C 0.53 8.44 6.32 -11.03 -0.07 8.37 16 23 O -0.51 -10.36 13.85 5.56 0.08 -10.29 16 24 H 0.10 1.06 7.84 -52.49 -0.41 0.64 16 25 H 0.10 0.93 8.06 -52.49 -0.42 0.50 16 26 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.08 0.98 7.59 -51.93 -0.39 0.59 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 32 H 0.09 0.73 7.87 -51.93 -0.41 0.32 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.67 6.68 -51.93 -0.35 0.32 16 36 H 0.08 1.86 6.68 -51.93 -0.35 1.51 16 37 H 0.03 0.84 7.98 -51.93 -0.41 0.42 16 38 H -0.01 -0.29 8.13 -51.93 -0.42 -0.71 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 41 H 0.05 1.12 5.78 -51.93 -0.30 0.82 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -34.14 337.95 -8.91 -43.05 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.18 Total: -2.01 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.01 Total: -4.56 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.86 Total: -48.50 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.14 -8.91 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.365 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds