Wall clock time and date at job start Tue Mar 31 2020 00:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99927 * 2 1 4 4 N 1.46497 * 109.47339 * 124.99719 * 3 2 1 5 5 C 1.46816 * 124.36519 * 89.99776 * 4 3 2 6 6 C 1.54587 * 105.49771 * 163.07822 * 5 4 3 7 7 C 1.54123 * 101.65242 * 24.98292 * 6 5 4 8 8 C 1.52546 * 110.08162 * 94.64633 * 7 6 5 9 9 C 1.53148 * 109.31555 * 178.10710 * 8 7 6 10 10 N 1.46848 * 109.45467 * 301.74317 * 9 8 7 11 11 C 1.46901 * 110.99528 * 186.35277 * 10 9 8 12 12 C 1.50703 * 109.47410 * 65.64553 * 11 10 9 13 13 H 1.08001 * 119.99366 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00116 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99715 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99956 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47084 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.46921 * 120.00064 * 16 14 12 19 19 H 1.48497 * 109.46827 * 240.00403 * 16 14 12 20 20 C 1.46856 * 111.31188 * 62.17582 * 10 9 8 21 21 C 1.52534 * 110.08650 * 216.69374 * 7 6 5 22 22 C 1.34577 * 124.36058 * 269.99655 * 4 3 2 23 23 O 1.21279 * 125.02761 * 0.68388 * 22 4 3 24 24 H 1.07994 * 119.99706 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99921 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00113 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46894 * 4.99354 * 3 2 1 28 28 H 1.09003 * 109.46901 * 244.99580 * 3 2 1 29 29 H 1.09007 * 110.23965 * 44.07418 * 5 4 3 30 30 H 1.08997 * 110.31425 * 282.12769 * 5 4 3 31 31 H 1.09006 * 110.99067 * 266.89012 * 6 5 4 32 32 H 1.08997 * 110.98907 * 143.07838 * 6 5 4 33 33 H 1.08995 * 109.49479 * 298.06222 * 8 7 6 34 34 H 1.09004 * 109.49736 * 58.15429 * 8 7 6 35 35 H 1.08993 * 109.47231 * 61.74041 * 9 8 7 36 36 H 1.09000 * 109.46946 * 181.74710 * 9 8 7 37 37 H 1.09001 * 109.46963 * 185.64486 * 11 10 9 38 38 H 1.09003 * 109.47402 * 305.64047 * 11 10 9 39 39 H 0.96999 * 119.99362 * 179.97438 * 15 14 12 40 40 H 1.09007 * 109.47545 * 177.82831 * 20 10 9 41 41 H 1.08997 * 109.47945 * 57.81035 * 20 10 9 42 42 H 1.09005 * 109.50034 * 301.83676 * 21 7 6 43 43 H 1.08999 * 109.49847 * 61.90309 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3797 0.8508 1.0764 6 6 5.0785 1.4620 2.3125 7 6 3.8868 1.6898 3.2629 8 6 3.7370 0.5027 4.2090 9 6 2.5790 0.7681 5.1754 10 7 2.8387 2.0058 5.9219 11 6 1.8250 2.2143 6.9644 12 6 1.9413 1.1282 8.0027 13 1 2.6928 0.3597 7.8982 14 6 1.0882 1.1157 9.0858 15 7 0.1734 2.0520 9.2131 16 14 1.2319 -0.2309 10.3724 17 1 2.3320 -1.1562 9.9997 18 1 1.5229 0.3775 11.6953 19 1 -0.0454 -0.9849 10.4444 20 6 2.9158 3.1648 5.0233 21 6 4.0854 2.9800 4.0520 22 6 2.6879 1.8010 2.3552 23 8 1.6080 2.2473 2.6797 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4025 -0.9314 29 1 4.8624 1.1950 0.1617 30 1 4.4047 -0.2377 1.1287 31 1 5.5630 2.4054 2.0604 32 1 5.7932 0.7608 2.7434 33 1 3.5301 -0.3985 3.6320 34 1 4.6594 0.3694 4.7744 35 1 1.6518 0.8715 4.6118 36 1 2.4895 -0.0649 5.8727 37 1 1.9819 3.1850 7.4348 38 1 0.8316 2.1840 6.5165 39 1 -0.4270 2.0429 9.9749 40 1 3.0705 4.0701 5.6104 41 1 1.9863 3.2509 4.4606 42 1 5.0185 2.9237 4.6127 43 1 4.1246 3.8247 3.3643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:00 Heat of formation + Delta-G solvation = -32.376501 kcal Electronic energy + Delta-G solvation = -22757.355173 eV Core-core repulsion = 19608.740064 eV Total energy + Delta-G solvation = -3148.615109 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19022 -38.96745 -37.57233 -36.26205 -34.89976 -33.54065 -31.86021 -30.70907 -28.68989 -27.53001 -26.05520 -24.30008 -23.64021 -22.43290 -21.80485 -20.77288 -19.56870 -18.48615 -17.73247 -17.20638 -16.89989 -16.25128 -15.95892 -15.74298 -15.51531 -15.28490 -14.99469 -14.70326 -14.44383 -14.12091 -13.90635 -13.84336 -13.48946 -13.21641 -13.05561 -12.94461 -12.74060 -12.57436 -12.50806 -12.33749 -12.17113 -12.02359 -11.98751 -11.50932 -11.19939 -10.98005 -10.74933 -10.62650 -10.27318 -9.66669 -8.95864 -8.21426 -6.33067 1.15301 1.39260 1.41128 1.55058 1.61441 2.24539 2.39551 3.10050 3.26404 3.43849 3.55033 3.75834 3.91633 4.04465 4.07567 4.17667 4.33185 4.37483 4.42624 4.55444 4.65580 4.66684 4.68652 4.75424 4.83426 4.87748 4.94107 4.97388 5.04414 5.11181 5.16427 5.21423 5.24459 5.32717 5.38872 5.58803 5.61793 5.65105 5.77620 6.03681 6.17085 6.34190 6.64662 6.83989 7.25319 7.36914 8.90885 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.004619 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.372293 B = 6060.442408 C = 6512.488526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.181 4.181 3 C 0.149 3.851 4 N -0.617 5.617 5 C 0.100 3.900 6 C -0.112 4.112 7 C -0.092 4.092 8 C -0.081 4.081 9 C 0.063 3.937 10 N -0.528 5.528 11 C 0.209 3.791 12 C -0.520 4.520 13 H 0.069 0.931 14 C -0.005 4.005 15 N -0.940 5.940 16 Si 0.977 3.023 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.280 1.280 20 C 0.038 3.962 21 C -0.079 4.079 22 C 0.514 3.486 23 O -0.571 6.571 24 H 0.088 0.912 25 H 0.109 0.891 26 H 0.125 0.875 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.099 0.901 35 H -0.005 1.005 36 H 0.061 0.939 37 H 0.000 1.000 38 H -0.057 1.057 39 H 0.264 0.736 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.095 0.905 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.922 -4.839 -22.039 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.200 4.200 3 C 0.028 3.972 4 N -0.350 5.350 5 C -0.022 4.022 6 C -0.149 4.149 7 C -0.096 4.096 8 C -0.119 4.119 9 C -0.066 4.066 10 N -0.252 5.252 11 C 0.082 3.918 12 C -0.558 4.558 13 H 0.087 0.913 14 C -0.202 4.202 15 N -0.581 5.581 16 Si 0.801 3.199 17 H -0.181 1.181 18 H -0.201 1.201 19 H -0.206 1.206 20 C -0.090 4.090 21 C -0.117 4.117 22 C 0.302 3.698 23 O -0.450 6.450 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.143 0.857 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.013 0.987 36 H 0.080 0.920 37 H 0.018 0.982 38 H -0.039 1.039 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.114 0.886 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.656 -4.588 -21.636 25.482 hybrid contribution -2.029 -0.022 0.675 2.139 sum 10.627 -4.610 -20.961 23.948 Atomic orbital electron populations 1.24036 0.96510 1.02278 0.99343 1.23423 0.96284 0.99396 1.00876 1.20573 0.92108 0.95119 0.89379 1.48523 1.14692 1.61552 1.10248 1.22439 0.78964 1.00142 1.00619 1.22761 0.95238 1.04090 0.92861 1.21094 0.95095 0.97878 0.95492 1.21415 0.99231 0.95977 0.95248 1.21953 0.96250 0.93206 0.95172 1.62050 1.48222 1.02356 1.12607 1.19334 0.86671 0.96170 0.89614 1.21494 1.16631 1.11074 1.06635 0.91324 1.26066 0.94594 0.98891 1.00662 1.70142 1.20867 1.35799 1.31257 0.85218 0.78259 0.78416 0.78014 1.18097 1.20074 1.20597 1.22264 0.98747 0.93516 0.94490 1.21355 0.98380 0.95595 0.96401 1.21245 0.88949 0.75831 0.83761 1.90679 1.28238 1.47749 1.78333 0.89379 0.87257 0.85744 0.92119 0.85978 0.87156 0.89656 0.88122 0.86367 0.90262 0.88240 0.98688 0.92033 0.98202 1.03947 0.92714 0.92689 0.96141 0.88611 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 14.32 67.77 0.97 -2.95 16 2 C -0.18 -3.52 9.85 25.64 0.25 -3.27 16 3 C 0.15 2.83 6.37 85.63 0.55 3.37 16 4 N -0.62 -13.21 2.92 -822.42 -2.40 -15.62 16 5 C 0.10 1.17 7.36 86.86 0.64 1.81 16 6 C -0.11 -1.49 6.21 31.51 0.20 -1.30 16 7 C -0.09 -2.39 0.55 -52.83 -0.03 -2.42 16 8 C -0.08 -2.38 4.77 30.49 0.15 -2.24 16 9 C 0.06 2.75 5.08 86.36 0.44 3.18 16 10 N -0.53 -25.55 4.63 -900.43 -4.17 -29.72 16 11 C 0.21 12.52 4.72 85.56 0.40 12.92 16 12 C -0.52 -31.51 8.42 25.60 0.22 -31.30 16 13 H 0.07 3.99 7.11 -2.91 -0.02 3.97 16 14 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 15 N -0.94 -60.42 13.29 21.45 0.28 -60.13 16 16 Si 0.98 46.11 29.54 68.60 2.03 48.14 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 C 0.04 1.62 5.24 86.36 0.45 2.08 16 21 C -0.08 -2.34 4.77 30.49 0.15 -2.19 16 22 C 0.51 16.10 6.32 87.71 0.55 16.66 16 23 O -0.57 -24.67 13.85 -3.03 -0.04 -24.71 16 24 H 0.09 2.02 7.84 -2.91 -0.02 2.00 16 25 H 0.11 2.03 8.06 -2.91 -0.02 2.01 16 26 H 0.12 2.02 8.06 -2.91 -0.02 1.99 16 27 H 0.06 1.44 7.59 -2.39 -0.02 1.42 16 28 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 1.05 7.89 -2.38 -0.02 1.03 16 32 H 0.12 1.06 7.87 -2.39 -0.02 1.04 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 35 H -0.01 -0.26 6.68 -2.39 -0.02 -0.28 16 36 H 0.06 2.88 6.68 -2.39 -0.02 2.87 16 37 H 0.00 -0.01 7.98 -2.39 -0.02 -0.03 16 38 H -0.06 -3.88 8.13 -2.39 -0.02 -3.89 16 39 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.05 2.35 8.01 -2.38 -0.02 2.33 16 41 H 0.02 1.00 5.78 -2.39 -0.01 0.99 16 42 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -82.11 337.95 2.05 -80.06 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.96 Total: 7.44 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 5.39 Total: -5.46 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -6.29 Total: -105.47 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.04 Total: -24.71 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -82.11 2.05 -80.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.686 kcal (2) G-P(sol) polarization free energy of solvation -82.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds