Wall clock time and date at job start Tue Mar 31 2020 00:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99651 * 2 1 4 4 N 1.46500 * 109.46653 * 124.99912 * 3 2 1 5 5 C 1.46926 * 124.35390 * 269.99441 * 4 3 2 6 6 C 1.53817 * 105.35624 * 196.44809 * 5 4 3 7 7 C 1.53989 * 102.45466 * 335.29238 * 6 5 4 8 8 C 1.34499 * 124.35171 * 90.02530 * 4 3 2 9 9 O 1.21283 * 124.94677 * 359.62703 * 8 4 3 10 10 C 1.52413 * 110.60745 * 93.05779 * 6 5 4 11 11 C 1.53245 * 109.32459 * 66.74533 * 10 6 5 12 12 C 1.53129 * 109.13498 * 56.37743 * 11 10 6 13 13 C 1.53045 * 109.35056 * 301.63308 * 12 11 10 14 14 N 1.45966 * 110.79871 * 217.23801 * 6 5 4 15 15 C 1.46903 * 110.99754 * 60.11860 * 14 6 5 16 16 C 1.50699 * 109.47075 * 171.18607 * 15 14 6 17 17 H 1.08001 * 120.00291 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00114 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00001 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99835 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46740 * 90.00256 * 20 18 16 22 22 H 1.48502 * 109.47108 * 209.99843 * 20 18 16 23 23 H 1.48500 * 109.47348 * 330.00092 * 20 18 16 24 24 H 1.08011 * 120.00306 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00192 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.99990 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47097 * 5.00157 * 3 2 1 28 28 H 1.08991 * 109.46960 * 244.99645 * 3 2 1 29 29 H 1.09001 * 110.26189 * 77.48319 * 5 4 3 30 30 H 1.08992 * 110.26511 * 315.42612 * 5 4 3 31 31 H 1.09004 * 110.50952 * 142.77561 * 7 6 5 32 32 H 1.09001 * 110.50868 * 265.47433 * 7 6 5 33 33 H 1.08995 * 109.58998 * 306.75139 * 10 6 5 34 34 H 1.09002 * 109.46197 * 186.65686 * 10 6 5 35 35 H 1.08999 * 109.53588 * 296.46208 * 11 10 6 36 36 H 1.09004 * 109.53982 * 176.30071 * 11 10 6 37 37 H 1.09003 * 109.48820 * 61.59771 * 12 11 10 38 38 H 1.09003 * 109.49137 * 181.67229 * 12 11 10 39 39 H 1.08998 * 109.47173 * 179.83176 * 13 12 11 40 40 H 1.09001 * 109.47021 * 299.83778 * 13 12 11 41 41 H 1.08996 * 109.47717 * 291.18982 * 15 14 6 42 42 H 1.09006 * 109.46810 * 51.19306 * 15 14 6 43 43 H 0.97005 * 119.99931 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.6596 1.8439 2.4675 6 6 4.0106 2.0616 3.1699 7 6 4.9340 1.0797 2.4251 8 6 4.2634 0.8915 1.0806 9 8 4.7943 0.4136 0.1004 10 6 4.4905 3.4953 2.9773 11 6 3.5469 4.4496 3.7172 12 6 3.4778 4.0438 5.1921 13 6 2.9896 2.5971 5.2977 14 7 3.9216 1.7125 4.5844 15 6 3.5450 0.3029 4.7560 16 6 3.6729 -0.0779 6.2084 17 1 4.0008 0.6539 6.9318 18 6 3.3715 -1.3608 6.6139 19 7 3.4827 -1.6930 7.8815 20 14 2.8051 -2.6270 5.3627 21 1 3.9848 -3.3434 4.8147 22 1 1.8962 -3.6003 6.0199 23 1 2.0840 -1.9439 4.2587 24 1 -0.5401 0.9354 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 2.0635 1.1129 3.0137 30 1 2.1199 2.7874 2.3862 31 1 5.9275 1.5104 2.2996 32 1 4.9927 0.1311 2.9589 33 1 4.4950 3.7396 1.9151 34 1 5.4989 3.5977 3.3784 35 1 2.5517 4.3926 3.2764 36 1 3.9233 5.4694 3.6369 37 1 4.4686 4.1268 5.6390 38 1 2.7850 4.7007 5.7180 39 1 2.9425 2.3052 6.3468 40 1 1.9980 2.5149 4.8527 41 1 2.5140 0.1602 4.4324 42 1 4.2042 -0.3248 4.1564 43 1 3.2702 -2.5955 8.1668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:42 Heat of formation + Delta-G solvation = 1.616956 kcal Electronic energy + Delta-G solvation = -23267.232959 eV Core-core repulsion = 20120.091917 eV Total energy + Delta-G solvation = -3147.141042 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.03559 -38.33217 -35.97405 -34.27348 -33.89423 -32.12576 -31.44182 -28.20494 -27.73275 -26.91572 -24.89056 -23.85238 -21.63033 -20.91463 -20.41657 -19.28648 -18.20432 -17.22946 -16.57741 -15.89592 -15.61246 -15.08876 -14.64832 -14.45605 -14.33132 -14.13365 -13.74870 -13.42168 -13.25320 -12.96732 -12.66178 -12.52935 -12.30996 -12.16036 -11.93981 -11.61211 -11.38731 -11.29205 -10.96450 -10.84668 -10.67168 -10.49904 -10.22121 -9.94916 -9.73874 -9.69586 -9.45198 -9.28247 -8.64789 -8.62177 -7.50107 -6.12626 -4.10379 2.04043 2.78034 3.23253 3.25245 3.30909 3.33313 4.27898 4.35181 4.54817 4.79700 4.85913 4.91319 4.96050 5.05494 5.17903 5.20075 5.32781 5.34559 5.42709 5.49697 5.60854 5.71262 5.79021 5.85710 5.90208 5.93868 6.09435 6.12575 6.16387 6.26673 6.31583 6.41157 6.48637 6.59307 6.59628 6.71234 6.80169 6.91146 7.21019 7.50550 7.76859 7.93330 8.33629 8.55322 8.95689 9.48629 11.00044 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.008041 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.686126 B = 3481.180976 C = 4691.699416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.169 4.169 3 C 0.153 3.847 4 N -0.613 5.613 5 C 0.068 3.932 6 C 0.108 3.892 7 C -0.157 4.157 8 C 0.521 3.479 9 O -0.541 6.541 10 C -0.098 4.098 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.063 3.937 14 N -0.506 5.506 15 C 0.155 3.845 16 C -0.510 4.510 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.868 3.132 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.268 1.268 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.023 0.977 41 H -0.007 1.007 42 H 0.031 0.969 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 10.587 -12.013 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C 0.031 3.969 4 N -0.347 5.347 5 C -0.056 4.056 6 C 0.016 3.984 7 C -0.196 4.196 8 C 0.310 3.690 9 O -0.419 6.419 10 C -0.136 4.136 11 C -0.157 4.157 12 C -0.157 4.157 13 C -0.065 4.065 14 N -0.229 5.229 15 C 0.029 3.971 16 C -0.549 4.549 17 H 0.101 0.899 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.695 3.305 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.193 1.193 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.010 0.990 42 H 0.048 0.952 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.498 10.259 -12.224 16.337 hybrid contribution -1.322 -1.112 -0.883 1.940 sum -4.820 9.147 -13.107 16.694 Atomic orbital electron populations 1.23837 0.95635 1.01981 1.00467 1.23386 0.96266 0.99332 0.99864 1.20434 0.91761 0.95201 0.89509 1.48337 1.12188 1.62565 1.11574 1.23074 1.00375 0.99610 0.82566 1.21352 0.91971 0.95094 0.89982 1.22692 1.00176 1.03494 0.93264 1.21117 0.81766 0.76112 0.90031 1.90674 1.68615 1.45412 1.37178 1.21461 1.00294 0.92234 0.99620 1.21631 0.99179 0.98471 0.96443 1.21644 1.02146 0.96328 0.95533 1.22031 0.92378 0.91106 1.00973 1.61726 1.50308 1.05300 1.05531 1.20376 0.93696 0.84202 0.98822 1.20970 1.45143 0.97438 0.91307 0.89875 1.24862 0.95118 0.98041 0.94961 1.69879 1.48963 1.19809 1.14838 0.86978 0.79354 0.82103 0.82075 1.19993 1.21083 1.19305 0.88461 0.88280 0.87219 0.90152 0.89313 0.90365 0.90562 0.87751 0.85824 0.92063 0.90441 0.92537 0.92090 0.91062 0.92091 0.88799 0.95891 0.98959 0.95155 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 14.32 29.02 0.42 -1.55 16 2 C -0.17 -2.17 9.85 -36.02 -0.35 -2.52 16 3 C 0.15 1.90 6.37 -5.19 -0.03 1.86 16 4 N -0.61 -9.14 2.92 -173.99 -0.51 -9.64 16 5 C 0.07 1.01 5.10 -3.38 -0.02 0.99 16 6 C 0.11 1.67 0.60 -131.47 -0.08 1.59 16 7 C -0.16 -2.57 5.87 -27.01 -0.16 -2.73 16 8 C 0.52 8.96 8.03 -10.75 -0.09 8.87 16 9 O -0.54 -10.79 17.60 5.55 0.10 -10.69 16 10 C -0.10 -1.25 4.77 -26.90 -0.13 -1.38 16 11 C -0.12 -1.38 5.80 -26.54 -0.15 -1.53 16 12 C -0.12 -1.58 6.07 -26.64 -0.16 -1.74 16 13 C 0.06 1.06 5.08 -3.76 -0.02 1.04 16 14 N -0.51 -9.40 4.50 -220.25 -0.99 -10.39 16 15 C 0.15 3.45 3.08 -4.97 -0.02 3.44 16 16 C -0.51 -13.65 8.99 -34.44 -0.31 -13.96 16 17 H 0.08 2.41 7.25 -52.49 -0.38 2.03 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 20 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 H 0.10 0.89 7.84 -52.48 -0.41 0.48 16 25 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 26 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 28 H 0.09 1.10 7.93 -51.93 -0.41 0.69 16 29 H 0.08 1.33 5.79 -51.93 -0.30 1.03 16 30 H 0.08 0.96 6.23 -51.93 -0.32 0.64 16 31 H 0.10 1.55 7.88 -51.93 -0.41 1.14 16 32 H 0.12 2.28 5.23 -51.93 -0.27 2.01 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.83 6.62 -51.93 -0.34 1.49 16 40 H 0.02 0.38 7.23 -51.93 -0.38 0.00 16 41 H -0.01 -0.16 5.41 -51.93 -0.28 -0.44 16 42 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 328.28 15.07 4.95 4.95 Total: -1.00 -30.50 328.28 -8.18 -38.67 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.63 Total: 2.26 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.20 Total: -5.70 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.73 Total: -45.88 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.10 Total: -10.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.50 -8.18 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.289 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds