Wall clock time and date at job start Tue Mar 31 2020 00:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99651 * 2 1 4 4 N 1.46500 * 109.46653 * 124.99912 * 3 2 1 5 5 C 1.46926 * 124.35390 * 269.99441 * 4 3 2 6 6 C 1.53817 * 105.35624 * 196.44809 * 5 4 3 7 7 C 1.53989 * 102.45466 * 335.29238 * 6 5 4 8 8 C 1.34499 * 124.35171 * 90.02530 * 4 3 2 9 9 O 1.21283 * 124.94677 * 359.62703 * 8 4 3 10 10 C 1.52413 * 110.60745 * 93.05779 * 6 5 4 11 11 C 1.53245 * 109.32459 * 66.74533 * 10 6 5 12 12 C 1.53129 * 109.13498 * 56.37743 * 11 10 6 13 13 C 1.53045 * 109.35056 * 301.63308 * 12 11 10 14 14 N 1.45966 * 110.79871 * 217.23801 * 6 5 4 15 15 C 1.46903 * 110.99754 * 60.11860 * 14 6 5 16 16 C 1.50699 * 109.47075 * 171.18607 * 15 14 6 17 17 H 1.08001 * 120.00291 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00114 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00001 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99835 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46740 * 90.00256 * 20 18 16 22 22 H 1.48502 * 109.47108 * 209.99843 * 20 18 16 23 23 H 1.48500 * 109.47348 * 330.00092 * 20 18 16 24 24 H 1.08011 * 120.00306 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00192 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.99990 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47097 * 5.00157 * 3 2 1 28 28 H 1.08991 * 109.46960 * 244.99645 * 3 2 1 29 29 H 1.09001 * 110.26189 * 77.48319 * 5 4 3 30 30 H 1.08992 * 110.26511 * 315.42612 * 5 4 3 31 31 H 1.09004 * 110.50952 * 142.77561 * 7 6 5 32 32 H 1.09001 * 110.50868 * 265.47433 * 7 6 5 33 33 H 1.08995 * 109.58998 * 306.75139 * 10 6 5 34 34 H 1.09002 * 109.46197 * 186.65686 * 10 6 5 35 35 H 1.08999 * 109.53588 * 296.46208 * 11 10 6 36 36 H 1.09004 * 109.53982 * 176.30071 * 11 10 6 37 37 H 1.09003 * 109.48820 * 61.59771 * 12 11 10 38 38 H 1.09003 * 109.49137 * 181.67229 * 12 11 10 39 39 H 1.08998 * 109.47173 * 179.83176 * 13 12 11 40 40 H 1.09001 * 109.47021 * 299.83778 * 13 12 11 41 41 H 1.08996 * 109.47717 * 291.18982 * 15 14 6 42 42 H 1.09006 * 109.46810 * 51.19306 * 15 14 6 43 43 H 0.97005 * 119.99931 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.6596 1.8439 2.4675 6 6 4.0106 2.0616 3.1699 7 6 4.9340 1.0797 2.4251 8 6 4.2634 0.8915 1.0806 9 8 4.7943 0.4136 0.1004 10 6 4.4905 3.4953 2.9773 11 6 3.5469 4.4496 3.7172 12 6 3.4778 4.0438 5.1921 13 6 2.9896 2.5971 5.2977 14 7 3.9216 1.7125 4.5844 15 6 3.5450 0.3029 4.7560 16 6 3.6729 -0.0779 6.2084 17 1 4.0008 0.6539 6.9318 18 6 3.3715 -1.3608 6.6139 19 7 3.4827 -1.6930 7.8815 20 14 2.8051 -2.6270 5.3627 21 1 3.9848 -3.3434 4.8147 22 1 1.8962 -3.6003 6.0199 23 1 2.0840 -1.9439 4.2587 24 1 -0.5401 0.9354 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 2.0635 1.1129 3.0137 30 1 2.1199 2.7874 2.3862 31 1 5.9275 1.5104 2.2996 32 1 4.9927 0.1311 2.9589 33 1 4.4950 3.7396 1.9151 34 1 5.4989 3.5977 3.3784 35 1 2.5517 4.3926 3.2764 36 1 3.9233 5.4694 3.6369 37 1 4.4686 4.1268 5.6390 38 1 2.7850 4.7007 5.7180 39 1 2.9425 2.3052 6.3468 40 1 1.9980 2.5149 4.8527 41 1 2.5140 0.1602 4.4324 42 1 4.2042 -0.3248 4.1564 43 1 3.2702 -2.5955 8.1668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:42 Heat of formation + Delta-G solvation = -18.554050 kcal Electronic energy + Delta-G solvation = -23268.107639 eV Core-core repulsion = 20120.091917 eV Total energy + Delta-G solvation = -3148.015722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31114 -39.66059 -37.18861 -35.53654 -35.33659 -33.92205 -32.62506 -29.61584 -29.27837 -28.09317 -26.05406 -25.31782 -23.11020 -22.21889 -21.51249 -20.43570 -19.46151 -19.06682 -17.90987 -17.25839 -16.93841 -16.43012 -16.00825 -15.83543 -15.73555 -15.39555 -15.05283 -14.71183 -14.55964 -14.46352 -14.04207 -13.82755 -13.65039 -13.40095 -13.14311 -12.96149 -12.78772 -12.59149 -12.46067 -12.21008 -12.09064 -11.92629 -11.70423 -11.44343 -11.21839 -11.00587 -10.86836 -10.74932 -10.47860 -9.85282 -8.99031 -8.30182 -6.31091 1.10183 1.28357 1.31067 1.38315 1.45323 2.12439 2.28955 2.91589 3.04190 3.37092 3.60851 3.73951 3.80739 3.92139 4.04620 4.12053 4.25619 4.32540 4.40480 4.42738 4.46758 4.61218 4.64395 4.66690 4.73901 4.84602 4.92078 4.95999 5.03693 5.12765 5.15969 5.20675 5.29789 5.37208 5.42690 5.54642 5.57688 5.60273 5.71852 5.95745 6.02299 6.38885 6.65381 6.76196 7.04317 7.31502 8.86056 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.008041 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.686126 B = 3481.180976 C = 4691.699416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.200 4.200 3 C 0.151 3.849 4 N -0.605 5.605 5 C 0.074 3.926 6 C 0.109 3.891 7 C -0.159 4.159 8 C 0.518 3.482 9 O -0.575 6.575 10 C -0.094 4.094 11 C -0.112 4.112 12 C -0.111 4.111 13 C 0.063 3.937 14 N -0.518 5.518 15 C 0.167 3.833 16 C -0.508 4.508 17 H 0.047 0.953 18 C 0.017 3.983 19 N -0.943 5.943 20 Si 0.930 3.070 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.256 1.256 24 H 0.123 0.877 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.031 0.969 41 H -0.009 1.009 42 H 0.028 0.972 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 12.687 -14.216 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.220 4.220 3 C 0.030 3.970 4 N -0.337 5.337 5 C -0.050 4.050 6 C 0.017 3.983 7 C -0.199 4.199 8 C 0.307 3.693 9 O -0.455 6.455 10 C -0.132 4.132 11 C -0.150 4.150 12 C -0.149 4.149 13 C -0.065 4.065 14 N -0.241 5.241 15 C 0.041 3.959 16 C -0.546 4.546 17 H 0.065 0.935 18 C -0.181 4.181 19 N -0.584 5.584 20 Si 0.755 3.245 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.180 1.180 24 H 0.141 0.859 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.008 0.992 42 H 0.045 0.955 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.086 12.390 -14.437 19.693 hybrid contribution -0.857 -1.726 -0.151 1.932 sum -5.943 10.664 -14.588 19.022 Atomic orbital electron populations 1.24093 0.94868 1.03506 0.97064 1.23282 0.97071 0.98564 1.03057 1.20664 0.91784 0.96186 0.88357 1.48412 1.11725 1.61333 1.12250 1.23012 0.99589 1.00364 0.82046 1.21470 0.92407 0.96690 0.87716 1.22680 1.01419 1.02742 0.93066 1.21161 0.82618 0.75906 0.89606 1.90652 1.69573 1.47057 1.38254 1.21476 1.00500 0.90196 1.01001 1.21619 0.99720 0.99336 0.94283 1.21597 1.01925 0.93751 0.97653 1.22021 0.92801 0.93132 0.98532 1.61594 1.50916 1.03440 1.08147 1.20061 0.93399 0.86942 0.95536 1.21231 1.43633 0.96606 0.93143 0.93505 1.25648 0.95596 1.00245 0.96624 1.70019 1.50991 1.20464 1.16912 0.85977 0.79051 0.79584 0.79928 1.19719 1.20604 1.17976 0.85888 0.87743 0.89917 0.86678 0.89571 0.92639 0.87253 0.86484 0.88287 0.90230 0.90661 0.91088 0.89371 0.92068 0.89999 0.92653 0.95056 0.99169 0.95475 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 14.32 67.78 0.97 -1.94 16 2 C -0.20 -4.77 9.85 25.65 0.25 -4.52 16 3 C 0.15 3.32 6.37 85.63 0.55 3.87 16 4 N -0.61 -16.69 2.92 -822.92 -2.40 -19.09 16 5 C 0.07 1.98 5.10 86.57 0.44 2.43 16 6 C 0.11 3.16 0.60 4.12 0.00 3.16 16 7 C -0.16 -5.13 5.87 30.41 0.18 -4.96 16 8 C 0.52 17.33 8.03 87.93 0.71 18.03 16 9 O -0.57 -22.80 17.60 -3.04 -0.05 -22.85 16 10 C -0.09 -2.08 4.77 30.48 0.15 -1.93 16 11 C -0.11 -2.08 5.80 30.72 0.18 -1.90 16 12 C -0.11 -2.68 6.07 30.65 0.19 -2.50 16 13 C 0.06 2.08 5.08 86.30 0.44 2.52 16 14 N -0.52 -19.12 4.50 -850.73 -3.83 -22.95 16 15 C 0.17 7.57 3.08 85.56 0.26 7.83 16 16 C -0.51 -28.17 8.99 25.60 0.23 -27.94 16 17 H 0.05 2.88 7.25 -2.91 -0.02 2.86 16 18 C 0.02 0.96 5.47 84.65 0.46 1.42 16 19 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 20 Si 0.93 44.18 27.47 68.60 1.88 46.07 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.50 6.54 99.48 0.65 -10.85 16 24 H 0.12 1.65 7.84 -2.91 -0.02 1.63 16 25 H 0.10 1.81 8.06 -2.91 -0.02 1.79 16 26 H 0.08 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.12 1.74 7.79 -2.39 -0.02 1.72 16 28 H 0.09 1.96 7.93 -2.39 -0.02 1.94 16 29 H 0.06 1.78 5.79 -2.39 -0.01 1.77 16 30 H 0.11 2.23 6.23 -2.39 -0.01 2.21 16 31 H 0.12 3.38 7.88 -2.38 -0.02 3.36 16 32 H 0.10 3.72 5.23 -2.39 -0.01 3.70 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.16 6.56 -2.39 -0.02 1.14 16 36 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 2.24 6.62 -2.39 -0.02 2.23 16 40 H 0.03 0.98 7.23 -2.39 -0.02 0.96 16 41 H -0.01 -0.42 5.41 -2.39 -0.01 -0.43 16 42 H 0.03 1.27 4.78 -2.38 -0.01 1.26 16 43 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -69.18 328.28 1.84 -67.34 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.94 Total: 15.56 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.00 Total: -6.43 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -5.93 Total: -99.68 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Total: -69.18 1.84 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.790 kcal (2) G-P(sol) polarization free energy of solvation -69.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds