Wall clock time and date at job start Tue Mar 31 2020 00:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00260 * 2 1 4 4 N 1.46500 * 109.47316 * 125.00087 * 3 2 1 5 5 C 1.46917 * 124.35163 * 90.00238 * 4 3 2 6 6 C 1.53835 * 105.34441 * 163.55586 * 5 4 3 7 7 C 1.53954 * 102.46513 * 24.71022 * 6 5 4 8 8 C 1.34498 * 124.35099 * 269.97667 * 4 3 2 9 9 O 1.21279 * 124.94544 * 0.38645 * 8 4 3 10 10 C 1.52246 * 110.58646 * 266.85702 * 6 5 4 11 11 C 1.53255 * 109.35463 * 293.65086 * 10 6 5 12 12 C 1.53127 * 109.12794 * 303.51870 * 11 10 6 13 13 C 1.53217 * 109.31690 * 58.21051 * 12 11 10 14 14 N 1.45972 * 110.73740 * 142.82235 * 6 5 4 15 15 C 1.46900 * 111.00027 * 299.60772 * 14 6 5 16 16 C 1.50700 * 109.46975 * 184.53483 * 15 14 6 17 17 H 1.08003 * 120.00176 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99832 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00229 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00158 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47013 * 60.00158 * 20 18 16 22 22 H 1.48501 * 109.47415 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47112 * 300.00408 * 20 18 16 24 24 H 1.07999 * 120.00091 * 179.97438 * 1 2 3 25 25 H 1.08006 * 119.99743 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00124 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46986 * 4.99849 * 3 2 1 28 28 H 1.09000 * 109.47141 * 245.00523 * 3 2 1 29 29 H 1.08996 * 110.26942 * 44.58477 * 5 4 3 30 30 H 1.09004 * 110.26461 * 282.52481 * 5 4 3 31 31 H 1.09004 * 110.50907 * 94.52174 * 7 6 5 32 32 H 1.09003 * 110.51189 * 217.23072 * 7 6 5 33 33 H 1.09006 * 109.48600 * 173.68632 * 10 6 5 34 34 H 1.09002 * 109.49084 * 53.61936 * 10 6 5 35 35 H 1.09000 * 109.53548 * 63.43490 * 11 10 6 36 36 H 1.08997 * 109.53421 * 183.60083 * 11 10 6 37 37 H 1.08996 * 109.48265 * 178.27884 * 12 11 10 38 38 H 1.09001 * 109.47994 * 298.31448 * 12 11 10 39 39 H 1.09003 * 109.44860 * 180.27224 * 13 12 11 40 40 H 1.09007 * 109.44673 * 60.29726 * 13 12 11 41 41 H 1.08994 * 109.47140 * 304.54238 * 15 14 6 42 42 H 1.09004 * 109.47025 * 64.54226 * 15 14 6 43 43 H 0.96995 * 120.00074 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3807 0.8502 1.0759 6 6 5.0698 1.4501 2.3136 7 6 3.8875 1.6841 3.2714 8 6 2.6882 1.8010 2.3543 9 8 1.6092 2.2521 2.6756 10 6 5.7439 2.7697 1.9640 11 6 6.9010 2.5076 0.9939 12 6 7.8684 1.5031 1.6264 13 6 7.1147 0.2094 1.9515 14 7 6.0193 0.5014 2.8872 15 6 5.3421 -0.7329 3.3066 16 6 6.3307 -1.6400 3.9927 17 1 7.3591 -1.3304 4.1063 18 6 5.9220 -2.8647 4.4765 19 7 4.6695 -3.2415 4.3386 20 14 7.1471 -3.9889 5.3277 21 1 7.7054 -3.3007 6.5193 22 1 6.4625 -5.2367 5.7515 23 1 8.2477 -4.3232 4.3884 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 4.8664 1.2018 0.1656 30 1 4.4043 -0.2386 1.1210 31 1 3.7702 0.8371 3.9474 32 1 4.0289 2.6067 3.8345 33 1 6.1288 3.2332 2.8724 34 1 5.0193 3.4351 1.4946 35 1 6.5099 2.0998 0.0618 36 1 7.4256 3.4413 0.7916 37 1 8.6779 1.2891 0.9286 38 1 8.2805 1.9236 2.5437 39 1 7.8004 -0.5056 2.4064 40 1 6.7057 -0.2129 1.0335 41 1 4.5343 -0.4878 3.9961 42 1 4.9323 -1.2377 2.4317 43 1 4.3820 -4.1033 4.6786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:45 Heat of formation + Delta-G solvation = -2.645613 kcal Electronic energy + Delta-G solvation = -23138.974492 eV Core-core repulsion = 19991.648611 eV Total energy + Delta-G solvation = -3147.325880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87684 -38.18621 -35.78725 -34.13931 -33.83058 -32.02998 -31.29775 -28.05628 -27.21653 -26.59008 -24.83314 -23.98263 -21.69315 -20.97845 -20.04039 -19.37368 -18.03025 -16.87428 -16.43216 -15.74384 -15.31172 -14.94929 -14.59293 -14.34713 -14.18336 -14.03259 -13.75741 -13.55535 -13.06393 -12.64859 -12.57144 -12.45216 -12.09105 -11.86647 -11.67995 -11.32682 -11.30027 -11.14070 -10.88360 -10.77852 -10.72759 -10.43855 -10.23791 -10.05286 -9.66013 -9.53112 -9.24446 -9.16587 -8.48690 -8.47093 -7.33233 -6.09694 -4.11594 2.21771 2.96219 3.29163 3.34394 3.36342 3.42086 4.32235 4.50147 4.70660 4.95725 4.98934 5.07382 5.11617 5.19554 5.26038 5.29263 5.38935 5.44583 5.52268 5.66030 5.72834 5.84878 5.91184 5.98106 6.02465 6.03177 6.17890 6.20291 6.33145 6.37760 6.41038 6.64585 6.66701 6.68058 6.69089 6.83206 7.20326 7.26739 7.38698 7.71228 7.98908 8.08555 8.43750 8.51273 8.94964 9.52806 11.00808 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.006582 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.656334 B = 4252.853634 C = 5434.141257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.174 4.174 3 C 0.154 3.846 4 N -0.612 5.612 5 C 0.068 3.932 6 C 0.110 3.890 7 C -0.155 4.155 8 C 0.524 3.476 9 O -0.543 6.543 10 C -0.099 4.099 11 C -0.119 4.119 12 C -0.119 4.119 13 C 0.063 3.937 14 N -0.516 5.516 15 C 0.186 3.814 16 C -0.513 4.513 17 H 0.064 0.936 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.022 0.978 41 H 0.039 0.961 42 H -0.004 1.004 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 9.365 -9.860 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.193 4.193 3 C 0.032 3.968 4 N -0.346 5.346 5 C -0.056 4.056 6 C 0.018 3.982 7 C -0.194 4.194 8 C 0.313 3.687 9 O -0.421 6.421 10 C -0.137 4.137 11 C -0.157 4.157 12 C -0.157 4.157 13 C -0.065 4.065 14 N -0.240 5.240 15 C 0.062 3.938 16 C -0.551 4.551 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.130 0.870 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.145 0.855 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.014 0.986 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.076 9.666 -9.283 13.402 hybrid contribution 0.169 -1.349 -0.318 1.396 sum 0.245 8.317 -9.601 12.705 Atomic orbital electron populations 1.23832 0.95820 1.01849 0.99784 1.23346 0.96413 0.99096 1.00453 1.20412 0.91919 0.95771 0.88709 1.48304 1.13085 1.62090 1.11113 1.23075 0.80732 1.00975 1.00841 1.21258 0.91641 0.94416 0.90878 1.22657 0.91971 1.06222 0.98571 1.21082 0.89157 0.75714 0.82795 1.90657 1.26299 1.47079 1.78041 1.21440 0.97071 0.95215 0.99940 1.21623 0.96695 0.99170 0.98185 1.21683 0.97394 0.96160 1.00471 1.22030 0.94302 0.96129 0.94026 1.61920 1.09709 1.15101 1.37243 1.19918 0.94799 0.84175 0.94937 1.21088 0.96187 1.00595 1.37225 0.91739 1.24978 0.95286 0.98001 0.96145 1.69942 1.15506 1.21544 1.46411 0.86567 0.81028 0.79823 0.80038 1.20107 1.21383 1.20286 0.88356 0.88537 0.87050 0.89931 0.89981 0.90906 0.90025 0.85495 0.88217 0.90648 0.92204 0.92510 0.92268 0.92314 0.91298 0.89293 0.95933 0.94362 0.98627 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 14.32 29.02 0.42 -1.82 16 2 C -0.17 -2.42 9.85 -36.03 -0.35 -2.78 16 3 C 0.15 2.08 6.37 -5.19 -0.03 2.04 16 4 N -0.61 -9.83 2.92 -173.98 -0.51 -10.33 16 5 C 0.07 1.08 5.08 -3.38 -0.02 1.06 16 6 C 0.11 1.80 0.60 -131.56 -0.08 1.72 16 7 C -0.15 -2.73 5.87 -27.03 -0.16 -2.88 16 8 C 0.52 9.70 8.03 -10.75 -0.09 9.61 16 9 O -0.54 -11.56 17.60 5.56 0.10 -11.46 16 10 C -0.10 -1.33 4.76 -26.98 -0.13 -1.46 16 11 C -0.12 -1.44 5.80 -26.53 -0.15 -1.59 16 12 C -0.12 -1.61 6.09 -26.55 -0.16 -1.77 16 13 C 0.06 1.08 5.05 -3.66 -0.02 1.07 16 14 N -0.52 -9.91 4.54 -220.23 -1.00 -10.91 16 15 C 0.19 4.43 4.10 -4.98 -0.02 4.41 16 16 C -0.51 -13.47 8.42 -34.44 -0.29 -13.76 16 17 H 0.06 1.66 6.71 -52.48 -0.35 1.31 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -25.67 13.29 55.43 0.74 -24.94 16 20 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.10 1.14 8.06 -52.49 -0.42 0.72 16 25 H 0.10 1.15 7.84 -52.48 -0.41 0.74 16 26 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.99 6.20 -51.93 -0.32 0.67 16 30 H 0.08 1.50 5.71 -51.93 -0.30 1.20 16 31 H 0.13 2.58 5.26 -51.93 -0.27 2.30 16 32 H 0.10 1.59 7.88 -51.93 -0.41 1.18 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.66 6.54 -51.93 -0.34 0.32 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.70 6.34 -51.93 -0.33 1.37 16 40 H 0.02 0.39 7.20 -51.92 -0.37 0.01 16 41 H 0.04 1.00 5.50 -51.93 -0.29 0.71 16 42 H 0.00 -0.10 6.17 -51.93 -0.32 -0.42 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -29.81 331.20 -8.51 -38.32 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.62 Total: 3.13 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.18 Total: -4.68 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.77 Total: -46.18 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.10 Total: -11.46 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.81 -8.51 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.675 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds