Wall clock time and date at job start Tue Mar 31 2020 00:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00260 * 2 1 4 4 N 1.46500 * 109.47316 * 125.00087 * 3 2 1 5 5 C 1.46917 * 124.35163 * 90.00238 * 4 3 2 6 6 C 1.53835 * 105.34441 * 163.55586 * 5 4 3 7 7 C 1.53954 * 102.46513 * 24.71022 * 6 5 4 8 8 C 1.34498 * 124.35099 * 269.97667 * 4 3 2 9 9 O 1.21279 * 124.94544 * 0.38645 * 8 4 3 10 10 C 1.52246 * 110.58646 * 266.85702 * 6 5 4 11 11 C 1.53255 * 109.35463 * 293.65086 * 10 6 5 12 12 C 1.53127 * 109.12794 * 303.51870 * 11 10 6 13 13 C 1.53217 * 109.31690 * 58.21051 * 12 11 10 14 14 N 1.45972 * 110.73740 * 142.82235 * 6 5 4 15 15 C 1.46900 * 111.00027 * 299.60772 * 14 6 5 16 16 C 1.50700 * 109.46975 * 184.53483 * 15 14 6 17 17 H 1.08003 * 120.00176 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99832 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00229 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00158 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47013 * 60.00158 * 20 18 16 22 22 H 1.48501 * 109.47415 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47112 * 300.00408 * 20 18 16 24 24 H 1.07999 * 120.00091 * 179.97438 * 1 2 3 25 25 H 1.08006 * 119.99743 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00124 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46986 * 4.99849 * 3 2 1 28 28 H 1.09000 * 109.47141 * 245.00523 * 3 2 1 29 29 H 1.08996 * 110.26942 * 44.58477 * 5 4 3 30 30 H 1.09004 * 110.26461 * 282.52481 * 5 4 3 31 31 H 1.09004 * 110.50907 * 94.52174 * 7 6 5 32 32 H 1.09003 * 110.51189 * 217.23072 * 7 6 5 33 33 H 1.09006 * 109.48600 * 173.68632 * 10 6 5 34 34 H 1.09002 * 109.49084 * 53.61936 * 10 6 5 35 35 H 1.09000 * 109.53548 * 63.43490 * 11 10 6 36 36 H 1.08997 * 109.53421 * 183.60083 * 11 10 6 37 37 H 1.08996 * 109.48265 * 178.27884 * 12 11 10 38 38 H 1.09001 * 109.47994 * 298.31448 * 12 11 10 39 39 H 1.09003 * 109.44860 * 180.27224 * 13 12 11 40 40 H 1.09007 * 109.44673 * 60.29726 * 13 12 11 41 41 H 1.08994 * 109.47140 * 304.54238 * 15 14 6 42 42 H 1.09004 * 109.47025 * 64.54226 * 15 14 6 43 43 H 0.96995 * 120.00074 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3807 0.8502 1.0759 6 6 5.0698 1.4501 2.3136 7 6 3.8875 1.6841 3.2714 8 6 2.6882 1.8010 2.3543 9 8 1.6092 2.2521 2.6756 10 6 5.7439 2.7697 1.9640 11 6 6.9010 2.5076 0.9939 12 6 7.8684 1.5031 1.6264 13 6 7.1147 0.2094 1.9515 14 7 6.0193 0.5014 2.8872 15 6 5.3421 -0.7329 3.3066 16 6 6.3307 -1.6400 3.9927 17 1 7.3591 -1.3304 4.1063 18 6 5.9220 -2.8647 4.4765 19 7 4.6695 -3.2415 4.3386 20 14 7.1471 -3.9889 5.3277 21 1 7.7054 -3.3007 6.5193 22 1 6.4625 -5.2367 5.7515 23 1 8.2477 -4.3232 4.3884 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 4.8664 1.2018 0.1656 30 1 4.4043 -0.2386 1.1210 31 1 3.7702 0.8371 3.9474 32 1 4.0289 2.6067 3.8345 33 1 6.1288 3.2332 2.8724 34 1 5.0193 3.4351 1.4946 35 1 6.5099 2.0998 0.0618 36 1 7.4256 3.4413 0.7916 37 1 8.6779 1.2891 0.9286 38 1 8.2805 1.9236 2.5437 39 1 7.8004 -0.5056 2.4064 40 1 6.7057 -0.2129 1.0335 41 1 4.5343 -0.4878 3.9961 42 1 4.9323 -1.2377 2.4317 43 1 4.3820 -4.1033 4.6786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:45 Heat of formation + Delta-G solvation = -21.462434 kcal Electronic energy + Delta-G solvation = -23139.790450 eV Core-core repulsion = 19991.648611 eV Total energy + Delta-G solvation = -3148.141839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.26073 -39.61237 -37.13875 -35.54326 -35.31210 -33.74736 -32.58926 -29.36831 -28.94187 -27.95958 -26.13655 -25.53800 -23.24877 -22.27747 -21.23907 -20.67065 -19.34483 -18.66359 -17.88011 -17.25059 -16.88672 -16.32844 -15.95474 -15.76961 -15.64760 -15.40948 -15.09963 -14.82438 -14.35755 -14.18334 -14.01468 -13.79394 -13.56687 -13.34179 -12.89809 -12.84116 -12.76291 -12.60196 -12.46756 -12.26845 -12.06499 -11.96292 -11.63269 -11.43288 -11.18720 -10.91532 -10.87226 -10.54814 -10.42001 -9.81649 -8.92940 -8.19089 -6.27739 1.10509 1.42058 1.44321 1.48982 1.51938 2.15825 2.40625 3.01725 3.15195 3.41918 3.66909 3.79089 3.86812 3.90216 4.08358 4.16044 4.28399 4.30490 4.40664 4.47560 4.51510 4.62790 4.66378 4.73570 4.82197 4.90880 4.97866 5.03816 5.08354 5.18350 5.27758 5.31613 5.35863 5.46433 5.48813 5.57515 5.61374 5.67310 5.69237 6.01153 6.09239 6.37019 6.69414 6.89355 7.07246 7.41597 8.91344 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.006582 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.656334 B = 4252.853634 C = 5434.141257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.196 4.196 3 C 0.150 3.850 4 N -0.605 5.605 5 C 0.076 3.924 6 C 0.110 3.890 7 C -0.156 4.156 8 C 0.519 3.481 9 O -0.575 6.575 10 C -0.094 4.094 11 C -0.113 4.113 12 C -0.111 4.111 13 C 0.061 3.939 14 N -0.521 5.521 15 C 0.203 3.797 16 C -0.521 4.521 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.270 1.270 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.010 0.990 42 H -0.030 1.030 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 10.895 -11.401 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.215 4.215 3 C 0.029 3.971 4 N -0.337 5.337 5 C -0.049 4.049 6 C 0.019 3.981 7 C -0.195 4.195 8 C 0.308 3.692 9 O -0.456 6.456 10 C -0.131 4.131 11 C -0.151 4.151 12 C -0.148 4.148 13 C -0.067 4.067 14 N -0.244 5.244 15 C 0.078 3.922 16 C -0.560 4.560 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.124 0.876 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.028 0.972 42 H -0.012 1.012 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.686 11.204 -10.859 15.694 hybrid contribution -0.375 -1.835 0.140 1.878 sum 1.310 9.370 -10.720 14.298 Atomic orbital electron populations 1.24046 0.95560 1.02886 0.97888 1.23355 0.96977 0.98906 1.02251 1.20671 0.91977 0.95491 0.88923 1.48381 1.13563 1.60637 1.11085 1.22990 0.80813 0.99075 1.01986 1.21402 0.90963 0.95315 0.90424 1.22612 0.92819 1.05516 0.98595 1.21166 0.88745 0.75658 0.83623 1.90627 1.27370 1.48877 1.78736 1.21447 0.97871 0.93043 1.00770 1.21624 0.95710 1.00039 0.97686 1.21632 0.97863 0.94176 1.01154 1.22080 0.93344 0.98169 0.93075 1.61815 1.10414 1.13178 1.38991 1.19502 0.93782 0.85772 0.93187 1.21473 0.96670 1.01087 1.36732 0.91503 1.25850 0.96948 0.99719 0.96957 1.70087 1.17507 1.21972 1.47845 0.85518 0.78858 0.77622 0.79129 1.19460 1.21430 1.19043 0.87411 0.87440 0.88398 0.89610 0.86659 0.87554 0.93173 0.88877 0.86681 0.90482 0.90598 0.91507 0.89267 0.89902 0.91625 0.91801 0.96011 0.97189 1.01217 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 14.32 67.78 0.97 -3.15 16 2 C -0.20 -5.40 9.85 25.65 0.25 -5.14 16 3 C 0.15 3.83 6.37 85.63 0.55 4.38 16 4 N -0.60 -19.00 2.92 -822.90 -2.40 -21.41 16 5 C 0.08 2.32 5.08 86.58 0.44 2.76 16 6 C 0.11 3.53 0.60 4.06 0.00 3.54 16 7 C -0.16 -5.61 5.87 30.40 0.18 -5.43 16 8 C 0.52 19.38 8.03 87.93 0.71 20.08 16 9 O -0.58 -24.79 17.60 -3.02 -0.05 -24.84 16 10 C -0.09 -2.23 4.76 30.43 0.14 -2.09 16 11 C -0.11 -2.23 5.80 30.72 0.18 -2.05 16 12 C -0.11 -2.65 6.09 30.71 0.19 -2.46 16 13 C 0.06 2.05 5.05 86.36 0.44 2.49 16 14 N -0.52 -20.18 4.54 -850.67 -3.86 -24.04 16 15 C 0.20 10.15 4.10 85.56 0.35 10.50 16 16 C -0.52 -28.19 8.42 25.60 0.22 -27.98 16 17 H 0.07 3.50 6.71 -2.91 -0.02 3.49 16 18 C 0.00 0.19 5.46 84.65 0.46 0.65 16 19 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 20 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H 0.11 2.42 8.06 -2.91 -0.02 2.40 16 25 H 0.11 2.42 7.84 -2.91 -0.02 2.40 16 26 H 0.10 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.09 2.17 7.58 -2.39 -0.02 2.15 16 28 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.11 2.56 6.20 -2.39 -0.01 2.55 16 30 H 0.05 1.90 5.71 -2.38 -0.01 1.88 16 31 H 0.09 4.06 5.26 -2.38 -0.01 4.05 16 32 H 0.11 3.68 7.88 -2.39 -0.02 3.66 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.22 6.54 -2.39 -0.02 1.20 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.45 6.34 -2.39 -0.02 2.44 16 40 H 0.02 0.73 7.20 -2.38 -0.02 0.71 16 41 H 0.01 0.57 5.50 -2.39 -0.01 0.56 16 42 H -0.03 -1.61 6.17 -2.39 -0.01 -1.63 16 43 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -67.06 331.20 2.05 -65.01 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.99 Total: 18.99 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 5.07 Total: -3.90 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -5.98 Total: -100.74 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.06 2.05 -65.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.544 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds