Wall clock time and date at job start Tue Mar 31 2020 00:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00074 * 2 1 4 4 C 1.50700 * 120.00231 * 179.97438 * 2 1 3 5 5 N 1.46503 * 109.46862 * 94.99947 * 4 2 1 6 6 C 1.46874 * 124.37201 * 90.00609 * 5 4 2 7 7 C 1.54706 * 105.52016 * 196.82318 * 6 5 4 8 8 C 1.53619 * 101.51153 * 335.46765 * 7 6 5 9 9 C 1.53599 * 110.85739 * 263.09633 * 8 7 6 10 10 C 1.55166 * 102.66394 * 217.72558 * 9 8 7 11 11 N 1.48632 * 103.35724 * 36.57785 * 10 9 8 12 12 C 1.46898 * 110.99989 * 200.84454 * 11 10 9 13 13 C 1.50700 * 109.47319 * 287.45120 * 12 11 10 14 14 H 1.07992 * 120.00183 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99904 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00233 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47188 * 89.99694 * 17 15 13 19 19 H 1.48499 * 109.47289 * 210.00118 * 17 15 13 20 20 H 1.48507 * 109.46964 * 329.99795 * 17 15 13 21 21 C 1.48178 * 105.86082 * 321.38899 * 11 10 9 22 22 C 1.34753 * 124.37012 * 269.70209 * 5 4 2 23 23 O 1.21281 * 125.13165 * 358.96109 * 22 5 4 24 24 H 1.07996 * 120.00160 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.00353 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47152 * 269.99911 * 3 2 1 27 27 H 1.09001 * 109.46980 * 150.00011 * 3 2 1 28 28 H 1.09004 * 109.47113 * 29.99992 * 3 2 1 29 29 H 1.08999 * 109.47609 * 215.00136 * 4 2 1 30 30 H 1.09006 * 109.47060 * 335.00619 * 4 2 1 31 31 H 1.09003 * 110.23278 * 315.83359 * 6 5 4 32 32 H 1.09000 * 110.24324 * 77.80652 * 6 5 4 33 33 H 1.08997 * 111.01803 * 93.53083 * 7 6 5 34 34 H 1.09008 * 111.01525 * 217.37538 * 7 6 5 35 35 H 1.08996 * 110.77401 * 336.02257 * 9 8 7 36 36 H 1.08999 * 110.77262 * 99.43792 * 9 8 7 37 37 H 1.08998 * 110.64461 * 278.11293 * 10 9 8 38 38 H 1.09004 * 110.63942 * 155.04222 * 10 9 8 39 39 H 1.09002 * 109.46805 * 47.44905 * 12 11 10 40 40 H 1.08994 * 109.47243 * 167.44577 * 12 11 10 41 41 H 0.96997 * 120.00136 * 180.02562 * 16 15 13 42 42 H 1.08998 * 110.01987 * 265.81907 * 21 11 10 43 43 H 1.09001 * 110.06102 * 144.44404 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6683 -1.3753 6 6 3.6550 -1.2701 -2.0486 7 6 3.3979 -1.4927 -3.5578 8 6 2.2953 -2.5618 -3.5266 9 6 2.8902 -3.9665 -3.7060 10 6 1.8265 -4.6769 -4.5843 11 7 1.3612 -3.6007 -5.4978 12 6 0.0419 -3.9205 -6.0591 13 6 0.1827 -5.0236 -7.0761 14 1 1.1549 -5.4447 -7.2850 15 6 -0.9299 -5.4952 -7.7400 16 7 -2.1141 -4.9828 -7.4853 17 14 -0.7554 -6.8621 -9.0012 18 1 -0.9053 -8.1778 -8.3292 19 1 -1.8062 -6.7142 -10.0401 20 1 0.5841 -6.7808 -9.6371 21 6 1.3045 -2.3687 -4.6763 22 6 1.6358 -2.4159 -2.1844 23 8 0.5657 -2.8963 -1.8765 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 2.2452 1.6198 -1.0277 27 1 3.0159 1.1747 0.5138 28 1 1.4744 2.0648 0.5139 29 1 2.9742 -1.1986 0.5900 30 1 1.4385 -2.0853 0.4352 31 1 3.8694 -0.2194 -1.8535 32 1 4.4830 -1.8935 -1.7112 33 1 3.0426 -0.5783 -4.0328 34 1 4.2924 -1.8672 -4.0556 35 1 3.8484 -3.9173 -4.2232 36 1 2.9944 -4.4680 -2.7438 37 1 1.0033 -5.0425 -3.9705 38 1 2.2775 -5.4924 -5.1497 39 1 -0.6238 -4.2461 -5.2597 40 1 -0.3732 -3.0344 -6.5392 41 1 -2.8969 -5.3148 -7.9521 42 1 0.2979 -2.2292 -4.2820 43 1 1.5928 -1.5056 -5.2764 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:38 Heat of formation + Delta-G solvation = -31.945854 kcal Electronic energy + Delta-G solvation = -22391.978124 eV Core-core repulsion = 19243.381690 eV Total energy + Delta-G solvation = -3148.596434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.17593 -39.11431 -37.75480 -36.60253 -35.05114 -33.24161 -31.10331 -29.62072 -28.39806 -28.10658 -27.52512 -24.90636 -23.93282 -22.38360 -21.90666 -20.14806 -19.50430 -18.54587 -17.64277 -17.23674 -16.80492 -16.44022 -16.19580 -15.66647 -15.36667 -15.20760 -14.92532 -14.79650 -14.57897 -14.23046 -14.00977 -13.65074 -13.54315 -13.09815 -13.05191 -12.88047 -12.71707 -12.62661 -12.59062 -12.34075 -12.28691 -12.25107 -11.95624 -11.83829 -11.55663 -11.25017 -10.78162 -10.65290 -10.14643 -9.68968 -9.25987 -8.23203 -6.35393 1.01525 1.39211 1.42322 1.47870 1.54258 2.20680 2.39080 3.08635 3.15018 3.38388 3.51455 3.59549 3.82033 3.90749 3.96276 4.08437 4.31200 4.33772 4.44068 4.55041 4.63399 4.64472 4.70659 4.73630 4.80186 4.85577 4.86610 4.91298 4.93733 5.03848 5.10740 5.12495 5.15669 5.19571 5.22990 5.57247 5.60204 5.63722 5.80758 5.94342 6.08149 6.15920 6.42297 6.80326 7.12509 7.34813 8.89086 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030948 B = 0.003981 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.526103 B = 7032.602940 C = 7449.561114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C -0.109 4.109 4 C 0.155 3.845 5 N -0.610 5.610 6 C 0.102 3.898 7 C -0.108 4.108 8 C -0.104 4.104 9 C -0.082 4.082 10 C 0.043 3.957 11 N -0.509 5.509 12 C 0.201 3.799 13 C -0.523 4.523 14 H 0.069 0.931 15 C -0.005 4.005 16 N -0.940 5.940 17 Si 0.979 3.021 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.257 1.257 21 C 0.055 3.945 22 C 0.519 3.481 23 O -0.580 6.580 24 H 0.110 0.890 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.002 0.998 38 H 0.082 0.918 39 H -0.051 1.051 40 H -0.001 1.001 41 H 0.265 0.735 42 H 0.003 0.997 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.843 12.106 15.231 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.150 4.150 3 C -0.166 4.166 4 C 0.034 3.966 5 N -0.342 5.342 6 C -0.019 4.019 7 C -0.146 4.146 8 C -0.108 4.108 9 C -0.120 4.120 10 C -0.085 4.085 11 N -0.233 5.233 12 C 0.074 3.926 13 C -0.561 4.561 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.580 5.580 17 Si 0.802 3.198 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.181 1.181 21 C -0.074 4.074 22 C 0.307 3.693 23 O -0.459 6.459 24 H 0.128 0.872 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.020 0.980 38 H 0.100 0.900 39 H -0.033 1.033 40 H 0.017 0.983 41 H 0.073 0.927 42 H 0.021 0.979 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.474 11.951 14.992 25.941 hybrid contribution -2.135 -0.937 0.080 2.333 sum 15.339 11.014 15.072 24.161 Atomic orbital electron populations 1.23871 0.96413 1.01509 1.01124 1.22348 0.95373 0.97309 0.99979 1.20848 1.00584 0.92510 1.02632 1.20542 1.01007 0.93427 0.81592 1.48531 1.21018 1.51080 1.13557 1.22512 0.85125 1.03167 0.91069 1.22754 0.97907 0.97321 0.96598 1.21544 0.97516 1.00075 0.91623 1.22389 0.99015 0.91136 0.99498 1.23155 0.96380 0.95591 0.93397 1.64963 1.26745 1.02386 1.29158 1.19512 0.84986 0.95275 0.92836 1.21435 0.94331 1.18656 1.21649 0.91274 1.26088 0.94563 0.99961 0.99630 1.70134 0.99557 1.44311 1.44040 0.85244 0.78481 0.78175 0.77873 1.19890 1.20607 1.18121 1.22740 0.96014 0.95609 0.92988 1.20900 0.83553 0.77051 0.87803 1.90692 1.23578 1.51881 1.79760 0.87179 0.91087 0.91226 0.89530 0.91322 0.85815 0.92146 0.87423 0.88152 0.89249 0.85804 0.86174 0.90671 0.97962 0.89994 1.03330 0.98257 0.92658 0.97893 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.55 13.89 67.79 0.94 -3.61 16 2 C -0.15 -2.84 5.63 -16.48 -0.09 -2.93 16 3 C -0.11 -1.28 10.03 71.24 0.71 -0.57 16 4 C 0.16 2.97 6.11 85.63 0.52 3.49 16 5 N -0.61 -13.46 2.93 -822.47 -2.41 -15.87 16 6 C 0.10 1.28 7.36 86.89 0.64 1.92 16 7 C -0.11 -1.81 6.19 31.38 0.19 -1.62 16 8 C -0.10 -3.06 0.77 -52.66 -0.04 -3.10 16 9 C -0.08 -2.38 6.21 31.54 0.20 -2.18 16 10 C 0.04 1.81 6.14 86.71 0.53 2.34 16 11 N -0.51 -23.96 5.25 -888.09 -4.66 -28.62 16 12 C 0.20 11.93 4.47 85.56 0.38 12.31 16 13 C -0.52 -31.57 8.91 25.60 0.23 -31.34 16 14 H 0.07 4.00 7.81 -2.91 -0.02 3.98 16 15 C 0.00 -0.30 5.46 84.65 0.46 0.16 16 16 N -0.94 -60.41 13.29 21.45 0.28 -60.12 16 17 Si 0.98 46.07 29.54 68.60 2.03 48.09 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 21 C 0.06 2.21 5.99 86.06 0.52 2.73 16 22 C 0.52 17.28 6.59 87.52 0.58 17.86 16 23 O -0.58 -26.20 17.15 -3.03 -0.05 -26.25 16 24 H 0.11 2.25 8.04 -2.91 -0.02 2.22 16 25 H 0.07 2.12 7.99 -2.91 -0.02 2.09 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 28 H 0.07 0.75 8.06 -2.38 -0.02 0.73 16 29 H 0.12 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.06 1.47 7.77 -2.38 -0.02 1.45 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.44 7.59 -2.39 -0.02 1.43 16 34 H 0.12 1.44 7.45 -2.38 -0.02 1.42 16 35 H 0.12 2.61 7.46 -2.39 -0.02 2.59 16 36 H 0.07 2.02 7.84 -2.39 -0.02 2.01 16 37 H 0.00 0.10 7.80 -2.39 -0.02 0.08 16 38 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 39 H -0.05 -3.43 7.83 -2.39 -0.02 -3.45 16 40 H 0.00 -0.04 8.08 -2.39 -0.02 -0.06 16 41 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.00 0.13 7.09 -2.39 -0.02 0.11 16 43 H 0.10 3.35 7.40 -2.39 -0.02 3.33 16 Total: -1.00 -83.22 348.50 1.93 -81.29 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.96 Total: 6.02 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.77 Total: -4.54 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -6.78 Total: -104.62 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -83.22 1.93 -81.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.347 kcal (2) G-P(sol) polarization free energy of solvation -83.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds