Wall clock time and date at job start Tue Mar 31 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00133 * 2 1 4 4 N 1.46497 * 109.46994 * 124.99994 * 3 2 1 5 5 C 1.34777 * 119.99852 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00179 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00224 * 179.97438 * 5 4 3 8 8 H 1.09005 * 115.56827 * 325.72094 * 7 5 4 9 9 C 1.53058 * 117.50479 * 111.43827 * 7 5 4 10 10 C 1.52730 * 117.50768 * 179.97438 * 7 5 4 11 11 C 1.53218 * 117.84488 * 144.78398 * 10 7 5 12 12 C 1.53260 * 108.62110 * 162.99665 * 11 10 7 13 13 N 1.46803 * 109.45022 * 55.59618 * 12 11 10 14 14 C 1.46906 * 111.00388 * 170.80287 * 13 12 11 15 15 C 1.50703 * 109.46573 * 65.03661 * 14 13 12 16 16 H 1.08007 * 120.00181 * 354.97203 * 15 14 13 17 17 C 1.37878 * 119.99861 * 174.96443 * 15 14 13 18 18 N 1.31515 * 119.99803 * 0.28037 * 17 15 14 19 19 Si 1.86795 * 119.99939 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47422 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46880 * 120.00709 * 19 17 15 22 22 H 1.48504 * 109.47488 * 240.00302 * 19 17 15 23 23 C 1.46808 * 111.56935 * 295.17488 * 13 12 11 24 24 C 1.53215 * 117.84929 * 0.27793 * 10 7 5 25 25 H 1.07999 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.00174 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00236 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46954 * 4.99971 * 3 2 1 29 29 H 1.08998 * 109.47081 * 244.99899 * 3 2 1 30 30 H 0.96999 * 120.00226 * 359.97438 * 4 3 2 31 31 H 1.08991 * 117.50708 * 0.02562 * 9 7 5 32 32 H 1.09000 * 117.53414 * 214.93066 * 9 7 5 33 33 H 1.08991 * 109.61305 * 43.25145 * 11 10 7 34 34 H 1.09001 * 109.61336 * 282.73181 * 11 10 7 35 35 H 1.09006 * 109.47614 * 295.60428 * 12 11 10 36 36 H 1.09002 * 109.48379 * 175.59701 * 12 11 10 37 37 H 1.08994 * 109.46920 * 305.04324 * 14 13 12 38 38 H 1.08998 * 109.47048 * 185.03647 * 14 13 12 39 39 H 0.97000 * 120.00246 * 359.72546 * 18 17 15 40 40 H 1.09005 * 109.47262 * 184.81594 * 23 13 12 41 41 H 1.08997 * 109.48027 * 304.83563 * 23 13 12 42 42 H 1.09005 * 109.60856 * 316.74912 * 24 10 7 43 43 H 1.08998 * 109.61014 * 77.08973 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3334 6 8 3.7145 3.3559 0.5783 7 6 4.7348 2.4368 2.4976 8 1 4.3920 1.9311 3.4003 9 6 6.2319 2.3852 2.1837 10 6 5.5970 3.6853 2.6724 11 6 5.9134 4.1423 4.1002 12 6 7.0992 5.1121 4.0522 13 7 6.7890 6.2187 3.1388 14 6 7.8036 7.2771 3.2303 15 6 9.1285 6.7459 2.7472 16 1 9.2285 5.7034 2.4832 17 6 10.2131 7.5908 2.6421 18 7 10.0927 8.8590 2.9687 19 14 11.8555 6.9321 2.0439 20 1 11.7298 5.4821 1.7492 21 1 12.2589 7.6544 0.8106 22 1 12.8836 7.1365 3.0958 23 6 6.6400 5.7509 1.7552 24 6 5.4252 4.8214 1.6590 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 3.0445 0.5747 1.7356 31 1 6.5249 2.3315 1.1353 32 1 6.8744 1.8459 2.8798 33 1 6.1719 3.2782 4.7121 34 1 5.0450 4.6470 4.5237 35 1 7.9852 4.5855 3.6973 36 1 7.2867 5.5067 5.0508 37 1 7.8982 7.6011 4.2667 38 1 7.5035 8.1226 2.6113 39 1 9.2399 9.2009 3.2798 40 1 6.4958 6.6068 1.0958 41 1 7.5370 5.2087 1.4563 42 1 5.3602 4.4074 0.6527 43 1 4.5160 5.3787 1.8847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:04 Heat of formation + Delta-G solvation = 4.381182 kcal Electronic energy + Delta-G solvation = -21760.797474 eV Core-core repulsion = 18613.776298 eV Total energy + Delta-G solvation = -3147.021176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40773 -38.38657 -36.24876 -35.51824 -33.08207 -32.71835 -30.31711 -29.63575 -26.98383 -25.32719 -23.51099 -23.00555 -22.59649 -20.93122 -20.77517 -19.76274 -18.30991 -17.04372 -16.69575 -16.37787 -15.64206 -14.99586 -14.63258 -14.49574 -14.21080 -14.03161 -13.70880 -13.52104 -13.18431 -12.83464 -12.66947 -12.52653 -12.04456 -11.69150 -11.68707 -11.55032 -11.39601 -10.91051 -10.60842 -10.54390 -10.31869 -10.21383 -10.14328 -9.99578 -9.59816 -9.57428 -9.24219 -9.16526 -9.01842 -8.33009 -7.01679 -6.33299 -4.06939 1.64938 2.49313 3.13944 3.43026 3.46728 3.59674 3.90772 4.36907 4.54092 4.62502 4.68501 4.81810 4.85829 5.09915 5.16922 5.18931 5.35089 5.38585 5.40159 5.44795 5.67222 5.80555 5.87841 5.99632 6.07475 6.09315 6.11637 6.19448 6.27379 6.32208 6.45959 6.55224 6.64124 6.78963 6.84022 7.03645 7.17178 7.30187 7.35607 7.97055 8.19375 8.20773 8.30592 8.58029 8.85279 9.66548 11.03458 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035089 B = 0.003294 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.774021 B = 8497.350675 C = 8613.126579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.146 3.854 4 N -0.731 5.731 5 C 0.544 3.456 6 O -0.526 6.526 7 C -0.198 4.198 8 H 0.118 0.882 9 C -0.146 4.146 10 C -0.068 4.068 11 C -0.080 4.080 12 C 0.070 3.930 13 N -0.539 5.539 14 C 0.175 3.825 15 C -0.625 4.625 16 H 0.051 0.949 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 1.070 2.930 20 H -0.291 1.291 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.068 3.932 24 C -0.074 4.074 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.400 0.600 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.017 0.983 38 H 0.022 0.978 39 H 0.270 0.730 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.791 -19.503 -2.094 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.023 3.977 4 N -0.383 5.383 5 C 0.331 3.669 6 O -0.402 6.402 7 C -0.219 4.219 8 H 0.136 0.864 9 C -0.184 4.184 10 C -0.069 4.069 11 C -0.118 4.118 12 C -0.059 4.059 13 N -0.263 5.263 14 C 0.049 3.951 15 C -0.664 4.664 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.548 5.548 19 Si 0.899 3.101 20 H -0.217 1.217 21 H -0.213 1.213 22 H -0.214 1.214 23 C -0.060 4.060 24 C -0.112 4.112 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.234 0.766 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.727 -18.158 -2.841 23.551 hybrid contribution -0.820 -1.381 0.390 1.652 sum -15.547 -19.539 -2.451 25.089 Atomic orbital electron populations 1.23986 0.95798 1.02426 0.98334 1.23025 0.96246 0.98170 1.01924 1.20384 0.91881 0.95397 0.90061 1.45986 1.41361 1.20149 1.30848 1.19849 0.80039 0.81732 0.85282 1.90707 1.67394 1.34814 1.47296 1.22302 0.92999 1.08000 0.98641 0.86360 1.23047 0.90907 1.01699 1.02723 1.21582 0.98430 0.88785 0.98106 1.21325 0.99669 0.98419 0.92382 1.21787 0.94835 0.92044 0.97202 1.62200 1.47572 1.10692 1.05808 1.19837 0.88709 0.90248 0.96337 1.22617 0.97143 0.97642 1.49007 0.93045 1.25758 1.03155 0.94579 0.95021 1.70722 1.28482 1.14210 1.41384 0.83530 0.75157 0.74708 0.76686 1.21698 1.21334 1.21359 1.21904 0.95965 0.97387 0.90776 1.21455 0.98384 0.93879 0.97475 0.88126 0.87910 0.86723 0.91108 0.90711 0.76602 0.88490 0.87991 0.92260 0.91162 0.94480 0.91795 0.96469 0.95990 0.91942 0.91893 0.94577 0.89991 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 14.32 29.02 0.42 -0.51 16 2 C -0.18 -1.09 9.63 -36.02 -0.35 -1.44 16 3 C 0.15 1.28 6.11 -5.19 -0.03 1.24 16 4 N -0.73 -6.85 5.55 -61.48 -0.34 -7.20 16 5 C 0.54 7.07 7.59 -10.99 -0.08 6.99 16 6 O -0.53 -8.83 13.13 5.55 0.07 -8.76 16 7 C -0.20 -2.41 5.93 -91.88 -0.54 -2.95 16 8 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 9 C -0.15 -1.91 9.62 -26.85 -0.26 -2.17 16 10 C -0.07 -1.05 2.01 -154.57 -0.31 -1.36 16 11 C -0.08 -1.25 5.87 -26.48 -0.16 -1.40 16 12 C 0.07 1.39 5.08 -3.74 -0.02 1.37 16 13 N -0.54 -12.16 4.78 -235.89 -1.13 -13.28 16 14 C 0.17 4.63 4.45 -4.97 -0.02 4.61 16 15 C -0.62 -17.70 7.79 -34.44 -0.27 -17.97 16 16 H 0.05 1.47 5.93 -52.48 -0.31 1.16 16 17 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 18 N -0.91 -28.05 13.65 55.43 0.76 -27.29 16 19 Si 1.07 25.76 29.90 -169.99 -5.08 20.67 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.07 1.46 4.99 -3.74 -0.02 1.44 16 24 C -0.07 -1.35 4.32 -26.49 -0.11 -1.47 16 25 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 26 H 0.10 0.43 8.06 -52.48 -0.42 0.00 16 27 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 28 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 2.66 8.46 -40.82 -0.35 2.31 16 31 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.04 0.80 6.96 -51.93 -0.36 0.43 16 36 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 37 H 0.02 0.48 8.03 -51.93 -0.42 0.06 16 38 H 0.02 0.62 7.81 -51.93 -0.41 0.22 16 39 H 0.27 8.29 7.19 -40.82 -0.29 7.99 16 40 H 0.06 1.40 8.08 -51.93 -0.42 0.98 16 41 H 0.04 0.83 6.85 -51.93 -0.36 0.47 16 42 H 0.08 1.52 6.00 -51.93 -0.31 1.21 16 43 H 0.07 1.27 8.11 -51.93 -0.42 0.84 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -32.61 343.50 -9.45 -42.06 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.05 Total: 1.78 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.86 Total: -13.16 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.71 Total: -47.77 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.61 -9.45 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.443 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds