Wall clock time and date at job start Tue Mar 31 2020 01:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00133 * 2 1 4 4 N 1.46497 * 109.46994 * 124.99994 * 3 2 1 5 5 C 1.34777 * 119.99852 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00179 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00224 * 179.97438 * 5 4 3 8 8 H 1.09005 * 115.56827 * 325.72094 * 7 5 4 9 9 C 1.53058 * 117.50479 * 111.43827 * 7 5 4 10 10 C 1.52730 * 117.50768 * 179.97438 * 7 5 4 11 11 C 1.53218 * 117.84488 * 144.78398 * 10 7 5 12 12 C 1.53260 * 108.62110 * 162.99665 * 11 10 7 13 13 N 1.46803 * 109.45022 * 55.59618 * 12 11 10 14 14 C 1.46906 * 111.00388 * 170.80287 * 13 12 11 15 15 C 1.50703 * 109.46573 * 65.03661 * 14 13 12 16 16 H 1.08007 * 120.00181 * 354.97203 * 15 14 13 17 17 C 1.37878 * 119.99861 * 174.96443 * 15 14 13 18 18 N 1.31515 * 119.99803 * 0.28037 * 17 15 14 19 19 Si 1.86795 * 119.99939 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47422 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46880 * 120.00709 * 19 17 15 22 22 H 1.48504 * 109.47488 * 240.00302 * 19 17 15 23 23 C 1.46808 * 111.56935 * 295.17488 * 13 12 11 24 24 C 1.53215 * 117.84929 * 0.27793 * 10 7 5 25 25 H 1.07999 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.00174 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00236 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46954 * 4.99971 * 3 2 1 29 29 H 1.08998 * 109.47081 * 244.99899 * 3 2 1 30 30 H 0.96999 * 120.00226 * 359.97438 * 4 3 2 31 31 H 1.08991 * 117.50708 * 0.02562 * 9 7 5 32 32 H 1.09000 * 117.53414 * 214.93066 * 9 7 5 33 33 H 1.08991 * 109.61305 * 43.25145 * 11 10 7 34 34 H 1.09001 * 109.61336 * 282.73181 * 11 10 7 35 35 H 1.09006 * 109.47614 * 295.60428 * 12 11 10 36 36 H 1.09002 * 109.48379 * 175.59701 * 12 11 10 37 37 H 1.08994 * 109.46920 * 305.04324 * 14 13 12 38 38 H 1.08998 * 109.47048 * 185.03647 * 14 13 12 39 39 H 0.97000 * 120.00246 * 359.72546 * 18 17 15 40 40 H 1.09005 * 109.47262 * 184.81594 * 23 13 12 41 41 H 1.08997 * 109.48027 * 304.83563 * 23 13 12 42 42 H 1.09005 * 109.60856 * 316.74912 * 24 10 7 43 43 H 1.08998 * 109.61014 * 77.08973 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3334 6 8 3.7145 3.3559 0.5783 7 6 4.7348 2.4368 2.4976 8 1 4.3920 1.9311 3.4003 9 6 6.2319 2.3852 2.1837 10 6 5.5970 3.6853 2.6724 11 6 5.9134 4.1423 4.1002 12 6 7.0992 5.1121 4.0522 13 7 6.7890 6.2187 3.1388 14 6 7.8036 7.2771 3.2303 15 6 9.1285 6.7459 2.7472 16 1 9.2285 5.7034 2.4832 17 6 10.2131 7.5908 2.6421 18 7 10.0927 8.8590 2.9687 19 14 11.8555 6.9321 2.0439 20 1 11.7298 5.4821 1.7492 21 1 12.2589 7.6544 0.8106 22 1 12.8836 7.1365 3.0958 23 6 6.6400 5.7509 1.7552 24 6 5.4252 4.8214 1.6590 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 3.0445 0.5747 1.7356 31 1 6.5249 2.3315 1.1353 32 1 6.8744 1.8459 2.8798 33 1 6.1719 3.2782 4.7121 34 1 5.0450 4.6470 4.5237 35 1 7.9852 4.5855 3.6973 36 1 7.2867 5.5067 5.0508 37 1 7.8982 7.6011 4.2667 38 1 7.5035 8.1226 2.6113 39 1 9.2399 9.2009 3.2798 40 1 6.4958 6.6068 1.0958 41 1 7.5370 5.2087 1.4563 42 1 5.3602 4.4074 0.6527 43 1 4.5160 5.3787 1.8847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:03 Heat of formation + Delta-G solvation = -18.030371 kcal Electronic energy + Delta-G solvation = -21761.769312 eV Core-core repulsion = 18613.776298 eV Total energy + Delta-G solvation = -3147.993014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52178 -39.71879 -37.52563 -36.58864 -34.88497 -33.73033 -31.84722 -31.25706 -27.92784 -27.21153 -24.97349 -24.44938 -24.10904 -22.53799 -21.56793 -20.59210 -19.81555 -18.66263 -17.97039 -17.26452 -16.59928 -16.50594 -15.98340 -15.96174 -15.67424 -15.53867 -15.16496 -14.69654 -14.32746 -14.14141 -13.95448 -13.67895 -13.51325 -13.31103 -13.18073 -13.02113 -12.73656 -12.29466 -12.26190 -12.04565 -12.01205 -11.97127 -11.47473 -11.26967 -10.92229 -10.79081 -10.70488 -10.59172 -10.32746 -10.02154 -9.00798 -8.62871 -6.43216 1.16554 1.47446 1.47595 1.57003 1.72802 2.31495 2.51766 2.83099 3.11806 3.32605 3.62119 3.70288 3.84516 3.87829 3.98433 4.12338 4.15458 4.38387 4.41223 4.54741 4.60103 4.66640 4.73557 4.77905 4.83242 4.90103 4.91015 4.98956 5.01098 5.03694 5.06068 5.19255 5.22743 5.33336 5.38687 5.49782 5.63377 5.77655 5.82692 5.97541 6.42776 6.47672 6.49656 6.56875 7.28192 7.39750 8.67952 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035089 B = 0.003294 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.774021 B = 8497.350675 C = 8613.126579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.180 4.180 3 C 0.144 3.856 4 N -0.712 5.712 5 C 0.535 3.465 6 O -0.573 6.573 7 C -0.167 4.167 8 H 0.158 0.842 9 C -0.137 4.137 10 C -0.104 4.104 11 C -0.065 4.065 12 C 0.068 3.932 13 N -0.541 5.541 14 C 0.184 3.816 15 C -0.627 4.627 16 H 0.049 0.951 17 C -0.033 4.033 18 N -0.935 5.935 19 Si 1.119 2.881 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.275 1.275 23 C 0.074 3.926 24 C -0.057 4.057 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.417 0.583 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.020 0.980 36 H 0.058 0.942 37 H 0.001 0.999 38 H -0.006 1.006 39 H 0.256 0.744 40 H 0.039 0.961 41 H 0.018 0.982 42 H 0.077 0.923 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 -23.244 -1.444 28.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.198 4.198 3 C 0.021 3.979 4 N -0.364 5.364 5 C 0.323 3.677 6 O -0.453 6.453 7 C -0.187 4.187 8 H 0.176 0.824 9 C -0.174 4.174 10 C -0.104 4.104 11 C -0.102 4.102 12 C -0.060 4.060 13 N -0.264 5.264 14 C 0.056 3.944 15 C -0.665 4.665 16 H 0.067 0.933 17 C -0.232 4.232 18 N -0.572 5.572 19 Si 0.941 3.059 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.201 1.201 23 C -0.054 4.054 24 C -0.094 4.094 25 H 0.115 0.885 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.254 0.746 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.019 0.981 38 H 0.012 0.988 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.330 -21.957 -2.168 26.867 hybrid contribution -0.767 -0.219 0.154 0.813 sum -16.098 -22.176 -2.014 27.477 Atomic orbital electron populations 1.24175 0.95672 1.03218 0.96781 1.22940 0.96342 0.97298 1.03222 1.20403 0.91533 0.96672 0.89266 1.45846 1.40052 1.19590 1.30905 1.20120 0.80464 0.81909 0.85186 1.90698 1.68937 1.36749 1.48869 1.22355 0.92304 1.04578 0.99496 0.82405 1.23122 0.92085 0.99485 1.02718 1.21425 1.02742 0.89120 0.97141 1.21218 0.97405 0.98453 0.93162 1.21892 0.96610 0.91710 0.95800 1.62181 1.45887 1.11361 1.06991 1.19577 0.89403 0.90876 0.94502 1.22814 0.97862 0.97472 1.48382 0.93300 1.27317 1.07132 0.94200 0.94534 1.70855 1.27827 1.15337 1.43177 0.82904 0.71187 0.75107 0.76699 1.19817 1.20559 1.20095 1.21857 0.96942 0.96974 0.89647 1.21182 0.95544 0.94174 0.98526 0.88494 0.86012 0.85026 0.92376 0.91969 0.74570 0.89571 0.85462 0.88326 0.91030 0.96129 0.92314 0.98058 0.98769 0.93426 0.94233 0.96416 0.90480 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 14.32 67.78 0.97 -0.40 16 2 C -0.18 -1.79 9.63 25.65 0.25 -1.54 16 3 C 0.14 2.33 6.11 85.63 0.52 2.86 16 4 N -0.71 -11.54 5.55 -466.79 -2.59 -14.13 16 5 C 0.54 12.89 7.59 87.66 0.67 13.56 16 6 O -0.57 -19.16 13.13 -3.05 -0.04 -19.20 16 7 C -0.17 -3.45 5.93 -11.61 -0.07 -3.52 16 8 H 0.16 2.09 8.14 -2.38 -0.02 2.07 16 9 C -0.14 -3.15 9.62 30.52 0.29 -2.86 16 10 C -0.10 -2.99 2.01 -52.22 -0.11 -3.10 16 11 C -0.06 -1.86 5.87 30.75 0.18 -1.68 16 12 C 0.07 2.69 5.08 86.41 0.44 3.13 16 13 N -0.54 -25.21 4.78 -900.21 -4.30 -29.52 16 14 C 0.18 10.20 4.45 85.56 0.38 10.58 16 15 C -0.63 -36.44 7.79 25.60 0.20 -36.24 16 16 H 0.05 2.83 5.93 -2.91 -0.02 2.81 16 17 C -0.03 -1.97 5.46 84.65 0.46 -1.51 16 18 N -0.93 -59.01 13.65 21.45 0.29 -58.71 16 19 Si 1.12 51.70 29.90 68.60 2.05 53.75 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 C 0.07 3.32 4.99 86.41 0.43 3.75 16 24 C -0.06 -2.09 4.32 30.75 0.13 -1.96 16 25 H 0.10 0.90 7.84 -2.91 -0.02 0.88 16 26 H 0.12 0.61 8.06 -2.91 -0.02 0.59 16 27 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 28 H 0.06 1.09 7.79 -2.39 -0.02 1.08 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.42 3.93 8.46 -92.71 -0.78 3.15 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.10 2.10 8.08 -2.39 -0.02 2.08 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.02 0.87 6.96 -2.38 -0.02 0.86 16 36 H 0.06 2.34 8.01 -2.39 -0.02 2.32 16 37 H 0.00 0.08 8.03 -2.39 -0.02 0.06 16 38 H -0.01 -0.35 7.81 -2.39 -0.02 -0.37 16 39 H 0.26 16.45 7.19 -92.71 -0.67 15.79 16 40 H 0.04 1.88 8.08 -2.38 -0.02 1.87 16 41 H 0.02 0.84 6.85 -2.39 -0.02 0.83 16 42 H 0.08 2.94 6.00 -2.38 -0.01 2.93 16 43 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 Total: -1.00 -74.11 343.50 0.47 -73.64 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.30 Total: 13.12 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.75 Total: -18.94 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -6.60 Total: -102.36 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.04 Total: -19.20 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.75 kcal Total: -74.11 0.47 -73.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.607 kcal (2) G-P(sol) polarization free energy of solvation -74.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds