Wall clock time and date at job start Tue Mar 31 2020 01:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00563 * 2 1 4 4 N 1.46497 * 109.47137 * 124.99629 * 3 2 1 5 5 C 1.34772 * 120.00206 * 179.97438 * 4 3 2 6 6 O 1.21289 * 119.99964 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00038 * 180.02562 * 5 4 3 8 8 H 1.09003 * 115.57238 * 34.28456 * 7 5 4 9 9 C 1.53053 * 117.50535 * 248.55671 * 7 5 4 10 10 C 1.52741 * 117.50392 * 180.02562 * 7 5 4 11 11 C 1.53213 * 117.84332 * 359.73432 * 10 7 5 12 12 C 1.53252 * 108.62375 * 162.99019 * 11 10 7 13 13 N 1.46814 * 109.44639 * 55.59489 * 12 11 10 14 14 C 1.46897 * 110.99803 * 170.80776 * 13 12 11 15 15 C 1.50694 * 109.47298 * 65.03906 * 14 13 12 16 16 H 1.08000 * 120.00317 * 354.96523 * 15 14 13 17 17 C 1.37884 * 119.99999 * 174.96181 * 15 14 13 18 18 N 1.31512 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99804 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47028 * 180.02562 * 19 17 15 21 21 H 1.48507 * 109.47051 * 299.99779 * 19 17 15 22 22 H 1.48491 * 109.47305 * 60.00176 * 19 17 15 23 23 C 1.46808 * 111.56992 * 295.17829 * 13 12 11 24 24 C 1.53209 * 117.84988 * 215.22478 * 10 7 5 25 25 H 1.07990 * 120.00488 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.99520 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.99520 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46922 * 5.00459 * 3 2 1 29 29 H 1.08994 * 109.47368 * 245.00230 * 3 2 1 30 30 H 0.97005 * 120.00067 * 0.02562 * 4 3 2 31 31 H 1.09004 * 117.50107 * 145.05781 * 9 7 5 32 32 H 1.09000 * 117.53107 * 359.97438 * 9 7 5 33 33 H 1.09001 * 109.61582 * 43.24557 * 11 10 7 34 34 H 1.09004 * 109.61394 * 282.73024 * 11 10 7 35 35 H 1.09002 * 109.47583 * 295.60838 * 12 11 10 36 36 H 1.08998 * 109.47870 * 175.59435 * 12 11 10 37 37 H 1.09000 * 109.47237 * 305.03546 * 14 13 12 38 38 H 1.09008 * 109.47183 * 185.03762 * 14 13 12 39 39 H 0.97004 * 119.99793 * 359.97438 * 18 17 15 40 40 H 1.08995 * 109.47537 * 184.82335 * 23 13 12 41 41 H 1.09004 * 109.47358 * 304.83331 * 23 13 12 42 42 H 1.09001 * 109.61025 * 316.74984 * 24 10 7 43 43 H 1.08999 * 109.61620 * 77.26480 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7791 2.4083 1.3329 6 8 3.7155 3.3553 0.5777 7 6 4.7364 2.4356 2.4965 8 1 5.1793 1.4762 2.7639 9 6 4.4414 3.4188 3.6317 10 6 5.5988 3.6841 2.6714 11 6 5.4352 4.8154 1.6512 12 6 6.0459 6.0937 2.2358 13 7 7.4427 5.8410 2.6106 14 6 8.1255 7.0909 2.9703 15 6 7.4972 7.6669 4.2130 16 1 6.6224 7.2007 4.6416 17 6 8.0392 8.7892 4.8028 18 7 9.1042 9.3572 4.2807 19 14 7.2607 9.5027 6.3437 20 1 8.0264 10.6993 6.7765 21 1 5.8571 9.8919 6.0544 22 1 7.2794 8.4848 7.4247 23 6 7.5409 4.8567 3.6954 24 6 7.0242 3.5008 3.2023 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3588 2.1316 0.0897 29 1 2.6214 1.4025 -0.9313 30 1 3.0451 0.5743 1.7352 31 1 4.6902 3.1061 4.6459 32 1 3.5552 4.0465 3.5370 33 1 4.3762 4.9753 1.4487 34 1 5.9512 4.5527 0.7277 35 1 5.4817 6.3952 3.1184 36 1 6.0075 6.8884 1.4909 37 1 8.0322 7.8045 2.1517 38 1 9.1802 6.8881 3.1570 39 1 9.5087 8.9864 3.4807 40 1 8.5816 4.7587 4.0041 41 1 6.9403 5.1884 4.5424 42 1 7.0184 2.7892 4.0280 43 1 7.6677 3.1325 2.4033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:07 Heat of formation + Delta-G solvation = 4.491389 kcal Electronic energy + Delta-G solvation = -21757.642759 eV Core-core repulsion = 18610.626362 eV Total energy + Delta-G solvation = -3147.016397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41072 -38.38898 -36.25056 -35.52027 -33.08581 -32.71884 -30.31961 -29.63813 -26.98512 -25.32476 -23.51649 -23.01710 -22.58243 -20.93879 -20.77306 -19.75572 -18.31527 -17.07004 -16.69625 -16.36629 -15.59159 -15.05561 -14.75773 -14.32360 -14.18810 -14.03975 -13.69801 -13.59502 -13.17879 -12.93230 -12.62099 -12.46554 -12.05014 -11.72108 -11.67195 -11.54434 -11.39037 -10.92121 -10.64548 -10.51279 -10.34233 -10.21814 -10.10203 -10.00662 -9.60176 -9.58305 -9.21460 -9.18848 -9.01990 -8.33772 -7.01881 -6.33398 -4.07041 1.64755 2.48807 3.13883 3.42808 3.44491 3.63174 3.90406 4.36641 4.54345 4.62874 4.67886 4.81720 4.85986 5.08304 5.16513 5.20231 5.35579 5.38687 5.39743 5.44062 5.67620 5.80633 5.88544 6.00044 6.07191 6.08776 6.11613 6.19376 6.26997 6.31632 6.45596 6.57484 6.63255 6.80294 6.82491 7.01111 7.17005 7.29985 7.35216 7.96836 8.18915 8.20189 8.30446 8.57348 8.84752 9.66336 11.03197 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034423 B = 0.003299 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.224225 B = 8485.253570 C = 8639.937354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.146 3.854 4 N -0.731 5.731 5 C 0.544 3.456 6 O -0.527 6.527 7 C -0.198 4.198 8 H 0.119 0.881 9 C -0.146 4.146 10 C -0.068 4.068 11 C -0.074 4.074 12 C 0.066 3.934 13 N -0.539 5.539 14 C 0.175 3.825 15 C -0.626 4.626 16 H 0.050 0.950 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 1.065 2.935 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.072 3.928 24 C -0.081 4.081 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.400 0.600 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.021 0.979 39 H 0.269 0.731 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.059 0.941 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.953 -20.378 -4.623 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.023 3.977 4 N -0.383 5.383 5 C 0.331 3.669 6 O -0.403 6.403 7 C -0.219 4.219 8 H 0.137 0.863 9 C -0.184 4.184 10 C -0.069 4.069 11 C -0.111 4.111 12 C -0.063 4.063 13 N -0.263 5.263 14 C 0.049 3.951 15 C -0.665 4.665 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.546 5.546 19 Si 0.893 3.107 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.056 4.056 24 C -0.119 4.119 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.234 0.766 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.619 -18.639 -4.494 23.517 hybrid contribution -0.626 -1.494 -0.084 1.622 sum -14.245 -20.132 -4.579 25.084 Atomic orbital electron populations 1.23986 0.95800 1.02428 0.98309 1.23024 0.96247 0.98160 1.01947 1.20384 0.91881 0.95392 0.90061 1.45989 1.41225 1.20356 1.30767 1.19851 0.79902 0.81781 0.85354 1.90705 1.67925 1.34748 1.46880 1.22305 1.03675 0.97621 0.98342 0.86343 1.23048 1.01096 1.00175 0.94060 1.21581 0.92292 0.93872 0.99147 1.21443 1.01474 0.92172 0.96031 1.21931 0.89582 0.95815 0.98936 1.62200 1.13756 1.12397 1.37913 1.19827 0.94096 0.86082 0.95077 1.22562 1.15688 1.15203 1.13030 0.93144 1.25759 0.95668 0.94455 1.02596 1.70785 1.20097 1.41367 1.22371 0.83604 0.75496 0.76333 0.75242 1.20739 1.21529 1.21547 1.21762 1.00146 0.90414 0.93327 1.21339 0.92767 0.98086 0.99677 0.87905 0.88132 0.86725 0.91144 0.90681 0.76593 0.87970 0.88515 0.89988 0.91539 0.94791 0.91947 0.96410 0.96054 0.92012 0.91739 0.94291 0.92249 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 14.32 29.01 0.42 -0.51 16 2 C -0.18 -1.09 9.63 -36.03 -0.35 -1.43 16 3 C 0.15 1.27 6.11 -5.20 -0.03 1.24 16 4 N -0.73 -6.83 5.55 -61.48 -0.34 -7.17 16 5 C 0.54 7.05 7.59 -10.99 -0.08 6.97 16 6 O -0.53 -8.80 13.13 5.55 0.07 -8.72 16 7 C -0.20 -2.41 5.93 -91.88 -0.54 -2.95 16 8 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 9 C -0.15 -1.91 9.62 -26.85 -0.26 -2.17 16 10 C -0.07 -1.05 2.01 -154.57 -0.31 -1.36 16 11 C -0.07 -1.33 4.32 -26.49 -0.11 -1.45 16 12 C 0.07 1.40 5.09 -3.74 -0.02 1.38 16 13 N -0.54 -12.16 4.78 -235.90 -1.13 -13.28 16 14 C 0.18 4.64 4.45 -4.98 -0.02 4.62 16 15 C -0.63 -17.72 7.79 -34.44 -0.27 -17.99 16 16 H 0.05 1.43 5.93 -52.49 -0.31 1.12 16 17 C 0.02 0.58 5.46 -17.82 -0.10 0.49 16 18 N -0.91 -27.96 13.65 55.43 0.76 -27.20 16 19 Si 1.06 25.57 29.90 -169.99 -5.08 20.49 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.07 1.45 4.99 -3.74 -0.02 1.43 16 24 C -0.08 -1.27 5.87 -26.49 -0.16 -1.42 16 25 H 0.10 0.43 8.06 -52.49 -0.42 0.00 16 26 H 0.10 0.56 7.84 -52.48 -0.41 0.14 16 27 H 0.11 0.57 8.06 -52.48 -0.42 0.15 16 28 H 0.07 0.68 7.79 -51.93 -0.40 0.27 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 2.65 8.46 -40.82 -0.35 2.31 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.51 6.00 -51.93 -0.31 1.20 16 34 H 0.07 1.27 8.12 -51.93 -0.42 0.84 16 35 H 0.03 0.77 6.96 -51.93 -0.36 0.41 16 36 H 0.06 1.36 8.01 -51.93 -0.42 0.95 16 37 H 0.02 0.50 8.04 -51.93 -0.42 0.08 16 38 H 0.02 0.60 7.80 -51.92 -0.41 0.19 16 39 H 0.27 8.26 7.19 -40.82 -0.29 7.96 16 40 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 41 H 0.04 0.85 6.85 -51.93 -0.36 0.49 16 42 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -32.58 343.50 -9.45 -42.04 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.05 Total: 1.85 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.86 Total: -13.17 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.71 Total: -47.66 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.72 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.58 -9.45 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.527 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds