Wall clock time and date at job start Tue Mar 31 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00563 * 2 1 4 4 N 1.46497 * 109.47137 * 124.99629 * 3 2 1 5 5 C 1.34772 * 120.00206 * 179.97438 * 4 3 2 6 6 O 1.21289 * 119.99964 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00038 * 180.02562 * 5 4 3 8 8 H 1.09003 * 115.57238 * 34.28456 * 7 5 4 9 9 C 1.53053 * 117.50535 * 248.55671 * 7 5 4 10 10 C 1.52741 * 117.50392 * 180.02562 * 7 5 4 11 11 C 1.53213 * 117.84332 * 359.73432 * 10 7 5 12 12 C 1.53252 * 108.62375 * 162.99019 * 11 10 7 13 13 N 1.46814 * 109.44639 * 55.59489 * 12 11 10 14 14 C 1.46897 * 110.99803 * 170.80776 * 13 12 11 15 15 C 1.50694 * 109.47298 * 65.03906 * 14 13 12 16 16 H 1.08000 * 120.00317 * 354.96523 * 15 14 13 17 17 C 1.37884 * 119.99999 * 174.96181 * 15 14 13 18 18 N 1.31512 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99804 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47028 * 180.02562 * 19 17 15 21 21 H 1.48507 * 109.47051 * 299.99779 * 19 17 15 22 22 H 1.48491 * 109.47305 * 60.00176 * 19 17 15 23 23 C 1.46808 * 111.56992 * 295.17829 * 13 12 11 24 24 C 1.53209 * 117.84988 * 215.22478 * 10 7 5 25 25 H 1.07990 * 120.00488 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.99520 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.99520 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46922 * 5.00459 * 3 2 1 29 29 H 1.08994 * 109.47368 * 245.00230 * 3 2 1 30 30 H 0.97005 * 120.00067 * 0.02562 * 4 3 2 31 31 H 1.09004 * 117.50107 * 145.05781 * 9 7 5 32 32 H 1.09000 * 117.53107 * 359.97438 * 9 7 5 33 33 H 1.09001 * 109.61582 * 43.24557 * 11 10 7 34 34 H 1.09004 * 109.61394 * 282.73024 * 11 10 7 35 35 H 1.09002 * 109.47583 * 295.60838 * 12 11 10 36 36 H 1.08998 * 109.47870 * 175.59435 * 12 11 10 37 37 H 1.09000 * 109.47237 * 305.03546 * 14 13 12 38 38 H 1.09008 * 109.47183 * 185.03762 * 14 13 12 39 39 H 0.97004 * 119.99793 * 359.97438 * 18 17 15 40 40 H 1.08995 * 109.47537 * 184.82335 * 23 13 12 41 41 H 1.09004 * 109.47358 * 304.83331 * 23 13 12 42 42 H 1.09001 * 109.61025 * 316.74984 * 24 10 7 43 43 H 1.08999 * 109.61620 * 77.26480 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7791 2.4083 1.3329 6 8 3.7155 3.3553 0.5777 7 6 4.7364 2.4356 2.4965 8 1 5.1793 1.4762 2.7639 9 6 4.4414 3.4188 3.6317 10 6 5.5988 3.6841 2.6714 11 6 5.4352 4.8154 1.6512 12 6 6.0459 6.0937 2.2358 13 7 7.4427 5.8410 2.6106 14 6 8.1255 7.0909 2.9703 15 6 7.4972 7.6669 4.2130 16 1 6.6224 7.2007 4.6416 17 6 8.0392 8.7892 4.8028 18 7 9.1042 9.3572 4.2807 19 14 7.2607 9.5027 6.3437 20 1 8.0264 10.6993 6.7765 21 1 5.8571 9.8919 6.0544 22 1 7.2794 8.4848 7.4247 23 6 7.5409 4.8567 3.6954 24 6 7.0242 3.5008 3.2023 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3588 2.1316 0.0897 29 1 2.6214 1.4025 -0.9313 30 1 3.0451 0.5743 1.7352 31 1 4.6902 3.1061 4.6459 32 1 3.5552 4.0465 3.5370 33 1 4.3762 4.9753 1.4487 34 1 5.9512 4.5527 0.7277 35 1 5.4817 6.3952 3.1184 36 1 6.0075 6.8884 1.4909 37 1 8.0322 7.8045 2.1517 38 1 9.1802 6.8881 3.1570 39 1 9.5087 8.9864 3.4807 40 1 8.5816 4.7587 4.0041 41 1 6.9403 5.1884 4.5424 42 1 7.0184 2.7892 4.0280 43 1 7.6677 3.1325 2.4033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:06 Heat of formation + Delta-G solvation = -17.874102 kcal Electronic energy + Delta-G solvation = -21758.612599 eV Core-core repulsion = 18610.626362 eV Total energy + Delta-G solvation = -3147.986237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52160 -39.71938 -37.52510 -36.58720 -34.88455 -33.72962 -31.84886 -31.25802 -27.92542 -27.20862 -24.97135 -24.45563 -24.10357 -22.53791 -21.57154 -20.57715 -19.81986 -18.65886 -18.00182 -17.24418 -16.62356 -16.42055 -15.97632 -15.93862 -15.75029 -15.64455 -14.98635 -14.64967 -14.46943 -14.17035 -13.95768 -13.64689 -13.44162 -13.39610 -13.14585 -13.00970 -12.72080 -12.33632 -12.23115 -12.04429 -12.01826 -11.95281 -11.47414 -11.27290 -10.92575 -10.82485 -10.67631 -10.59105 -10.32032 -10.02298 -9.00692 -8.62658 -6.43072 1.16673 1.47306 1.48146 1.56189 1.75735 2.31934 2.52786 2.82763 3.11951 3.32579 3.62150 3.70434 3.84210 3.88819 3.98374 4.10519 4.16262 4.38132 4.41073 4.55784 4.59395 4.66538 4.73392 4.77908 4.83281 4.88921 4.91879 4.98616 5.00699 5.04527 5.06053 5.19752 5.22097 5.33304 5.39020 5.49576 5.63284 5.77603 5.82907 5.97179 6.42845 6.47838 6.48909 6.56846 7.28117 7.40004 8.68136 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034423 B = 0.003299 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.224225 B = 8485.253570 C = 8639.937354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.144 3.856 4 N -0.712 5.712 5 C 0.536 3.464 6 O -0.573 6.573 7 C -0.167 4.167 8 H 0.158 0.842 9 C -0.137 4.137 10 C -0.103 4.103 11 C -0.056 4.056 12 C 0.071 3.929 13 N -0.540 5.540 14 C 0.184 3.816 15 C -0.628 4.628 16 H 0.049 0.951 17 C -0.033 4.033 18 N -0.933 5.933 19 Si 1.114 2.886 20 H -0.282 1.282 21 H -0.274 1.274 22 H -0.267 1.267 23 C 0.071 3.929 24 C -0.065 4.065 25 H 0.122 0.878 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.417 0.583 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.016 0.984 36 H 0.042 0.958 37 H -0.008 1.008 38 H 0.003 0.997 39 H 0.256 0.744 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.098 0.902 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.702 -23.509 -3.097 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.198 4.198 3 C 0.021 3.979 4 N -0.364 5.364 5 C 0.324 3.676 6 O -0.452 6.452 7 C -0.187 4.187 8 H 0.176 0.824 9 C -0.174 4.174 10 C -0.104 4.104 11 C -0.094 4.094 12 C -0.057 4.057 13 N -0.264 5.264 14 C 0.057 3.943 15 C -0.667 4.667 16 H 0.067 0.933 17 C -0.231 4.231 18 N -0.570 5.570 19 Si 0.936 3.064 20 H -0.207 1.207 21 H -0.199 1.199 22 H -0.192 1.192 23 C -0.057 4.057 24 C -0.103 4.103 25 H 0.140 0.860 26 H 0.115 0.885 27 H 0.150 0.850 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.254 0.746 31 H 0.145 0.855 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.010 0.990 38 H 0.021 0.979 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.116 0.884 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.389 -21.847 -2.973 26.887 hybrid contribution -0.141 -0.551 -0.653 0.866 sum -15.530 -22.398 -3.626 27.495 Atomic orbital electron populations 1.24174 0.95699 1.03197 0.96836 1.22946 0.96330 0.97324 1.03170 1.20403 0.91538 0.96641 0.89289 1.45848 1.39940 1.19799 1.30810 1.20112 0.80355 0.81940 0.85241 1.90696 1.69363 1.36617 1.48566 1.22360 1.01434 0.97836 0.97111 0.82404 1.23122 0.99143 0.99943 0.95237 1.21419 0.93226 0.95347 1.00391 1.21177 1.00346 0.91677 0.96157 1.21902 0.88710 0.97409 0.97698 1.62183 1.14280 1.10927 1.39013 1.19566 0.93493 0.87513 0.93738 1.22771 1.15420 1.15196 1.13311 0.93270 1.27325 0.95390 0.95004 1.05390 1.70917 1.21482 1.42134 1.22514 0.82973 0.75213 0.76135 0.72124 1.20728 1.19935 1.19218 1.21850 0.99650 0.92150 0.92094 1.21224 0.92588 0.95570 1.00913 0.86020 0.88541 0.84967 0.92455 0.91858 0.74573 0.85516 0.89542 0.90408 0.92999 0.96539 0.93970 0.99013 0.97934 0.93499 0.92635 0.95973 0.88410 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 14.32 67.78 0.97 -0.41 16 2 C -0.18 -1.77 9.63 25.64 0.25 -1.52 16 3 C 0.14 2.31 6.11 85.63 0.52 2.84 16 4 N -0.71 -11.46 5.55 -466.80 -2.59 -14.05 16 5 C 0.54 12.81 7.59 87.66 0.67 13.48 16 6 O -0.57 -19.00 13.13 -3.06 -0.04 -19.04 16 7 C -0.17 -3.45 5.93 -11.61 -0.07 -3.52 16 8 H 0.16 2.08 8.14 -2.39 -0.02 2.06 16 9 C -0.14 -3.16 9.62 30.52 0.29 -2.87 16 10 C -0.10 -2.97 2.01 -52.22 -0.11 -3.08 16 11 C -0.06 -2.05 4.32 30.75 0.13 -1.92 16 12 C 0.07 3.15 5.09 86.40 0.44 3.59 16 13 N -0.54 -25.21 4.78 -900.24 -4.30 -29.51 16 14 C 0.18 10.24 4.45 85.56 0.38 10.62 16 15 C -0.63 -36.48 7.79 25.60 0.20 -36.28 16 16 H 0.05 2.83 5.93 -2.91 -0.02 2.81 16 17 C -0.03 -1.92 5.46 84.66 0.46 -1.45 16 18 N -0.93 -58.85 13.65 21.45 0.29 -58.56 16 19 Si 1.11 51.25 29.90 68.60 2.05 53.30 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C 0.07 2.83 4.99 86.41 0.43 3.26 16 24 C -0.07 -1.89 5.87 30.75 0.18 -1.71 16 25 H 0.12 0.62 8.06 -2.92 -0.02 0.59 16 26 H 0.10 0.90 7.84 -2.91 -0.02 0.88 16 27 H 0.13 0.86 8.06 -2.91 -0.02 0.84 16 28 H 0.06 1.07 7.79 -2.39 -0.02 1.06 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.42 3.90 8.46 -92.70 -0.78 3.12 16 31 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.94 6.00 -2.39 -0.01 2.92 16 34 H 0.05 2.02 8.12 -2.38 -0.02 2.00 16 35 H 0.02 0.77 6.96 -2.39 -0.02 0.76 16 36 H 0.04 1.96 8.01 -2.39 -0.02 1.95 16 37 H -0.01 -0.49 8.04 -2.39 -0.02 -0.51 16 38 H 0.00 0.15 7.80 -2.38 -0.02 0.13 16 39 H 0.26 16.39 7.19 -92.71 -0.67 15.72 16 40 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 41 H 0.02 0.95 6.85 -2.38 -0.02 0.94 16 42 H 0.10 2.13 8.08 -2.39 -0.02 2.11 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -73.94 343.50 0.47 -73.48 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.30 Total: 13.36 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.75 Total: -18.97 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -6.60 Total: -102.11 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.04 Total: -19.04 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.05 Total: 53.30 kcal Total: -73.94 0.47 -73.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.601 kcal (2) G-P(sol) polarization free energy of solvation -73.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds