Wall clock time and date at job start Tue Mar 31 2020 00:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99823 * 2 1 4 4 C 1.50695 * 119.99961 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47095 * 95.00147 * 4 2 1 6 6 C 1.46875 * 124.37730 * 269.98139 * 5 4 2 7 7 C 1.54708 * 105.52542 * 196.85510 * 6 5 4 8 8 C 1.53582 * 101.50786 * 335.50734 * 7 6 5 9 9 C 1.53320 * 111.07992 * 262.64627 * 8 7 6 10 10 C 1.54499 * 104.75787 * 216.58634 * 9 8 7 11 11 C 1.54460 * 105.04277 * 359.26400 * 10 9 8 12 12 N 1.47402 * 111.07931 * 144.99240 * 8 7 6 13 13 C 1.46896 * 110.99726 * 278.34688 * 12 8 7 14 14 C 1.50704 * 109.46994 * 170.00151 * 13 12 8 15 15 H 1.08007 * 119.99808 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00347 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00313 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99721 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46892 * 90.00174 * 18 16 14 20 20 H 1.48498 * 109.47061 * 209.99501 * 18 16 14 21 21 H 1.48496 * 109.47441 * 329.99975 * 18 16 14 22 22 C 1.34761 * 124.37040 * 90.02517 * 5 4 2 23 23 O 1.21282 * 125.14322 * 358.95310 * 22 5 4 24 24 H 1.08004 * 120.00320 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00211 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46686 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47090 * 299.99490 * 3 2 1 28 28 H 1.09004 * 109.47210 * 59.99756 * 3 2 1 29 29 H 1.09000 * 109.47213 * 335.00359 * 4 2 1 30 30 H 1.09005 * 109.47012 * 214.99875 * 4 2 1 31 31 H 1.09002 * 110.23792 * 315.86801 * 6 5 4 32 32 H 1.09006 * 110.23698 * 77.75536 * 6 5 4 33 33 H 1.09000 * 111.01640 * 217.45382 * 7 6 5 34 34 H 1.08997 * 111.02293 * 93.56047 * 7 6 5 35 35 H 1.08996 * 110.38251 * 335.40796 * 9 8 7 36 36 H 1.09002 * 110.38075 * 97.76797 * 9 8 7 37 37 H 1.09001 * 110.32925 * 118.15606 * 10 9 8 38 38 H 1.09001 * 110.32828 * 240.37736 * 10 9 8 39 39 H 1.09001 * 110.37737 * 142.37453 * 11 10 9 40 40 H 1.08995 * 110.37978 * 264.61491 * 11 10 9 41 41 H 1.08995 * 109.47258 * 289.99773 * 13 12 8 42 42 H 1.08996 * 109.47311 * 50.00380 * 13 12 8 43 43 H 0.97004 * 120.00172 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3752 6 6 1.5635 -2.4782 -2.2593 7 6 2.4922 -2.9561 -3.4007 8 6 3.5825 -1.8747 -3.3817 9 6 3.3130 -0.8012 -4.4427 10 6 4.7112 -0.4109 -4.9716 11 6 5.7020 -1.2767 -4.1625 12 7 4.9014 -2.4457 -3.7091 13 6 5.5100 -3.0751 -2.5296 14 6 6.7293 -3.8550 -2.9494 15 1 7.0224 -3.8809 -3.9886 16 6 7.4700 -4.5363 -2.0070 17 7 8.5338 -5.2173 -2.3734 18 14 6.9626 -4.4921 -0.2098 19 1 6.0334 -5.6162 0.0700 20 1 8.1678 -4.6211 0.6481 21 1 6.2833 -3.2041 0.0813 22 6 3.5527 -1.3034 -1.9928 23 8 4.4240 -0.6176 -1.5014 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 3.1351 1.1059 0.0005 27 1 1.8002 1.8767 -0.8901 28 1 1.8001 1.8768 0.8900 29 1 1.4385 -2.0852 0.4352 30 1 2.9742 -1.1985 0.5900 31 1 1.1621 -3.3340 -1.7166 32 1 0.7512 -1.8724 -2.6611 33 1 1.9661 -2.9641 -4.3553 34 1 2.9112 -3.9375 -3.1788 35 1 2.7025 -1.2087 -5.2485 36 1 2.8226 0.0622 -3.9932 37 1 4.7909 -0.6378 -6.0347 38 1 4.9012 0.6477 -4.7943 39 1 6.5258 -1.6039 -4.7968 40 1 6.0815 -0.7193 -3.3062 41 1 5.7999 -2.3043 -1.8155 42 1 4.7901 -3.7487 -2.0650 43 1 9.0547 -5.6970 -1.7105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:28 Heat of formation + Delta-G solvation = -0.222447 kcal Electronic energy + Delta-G solvation = -23358.785211 eV Core-core repulsion = 20211.564407 eV Total energy + Delta-G solvation = -3147.220804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01354 -37.56932 -36.34667 -35.25328 -33.06484 -31.26676 -31.11347 -27.63687 -27.43427 -26.88511 -26.39062 -23.44746 -21.99876 -21.03427 -20.28724 -18.94201 -18.32524 -16.80360 -16.32610 -15.90607 -15.58242 -14.95913 -14.72285 -14.43691 -14.04065 -13.92337 -13.66423 -13.50961 -13.11392 -12.70714 -12.54341 -12.39985 -12.13355 -11.96606 -11.78812 -11.75624 -11.51811 -11.28752 -11.04815 -10.79250 -10.68165 -10.44155 -10.31110 -10.17959 -9.86328 -9.67914 -9.32104 -9.20542 -8.58720 -8.50740 -7.47324 -6.01649 -3.97994 1.91984 2.88545 3.30003 3.32740 3.38160 3.46214 4.41380 4.46725 4.63820 4.72018 4.75974 4.83183 5.01748 5.11900 5.28828 5.30052 5.31677 5.42667 5.48740 5.49819 5.54803 5.61699 5.67484 5.76830 5.87287 5.96192 6.00580 6.09256 6.16651 6.23156 6.33543 6.40691 6.56504 6.63909 6.69845 6.74505 6.82975 7.06765 7.29078 7.51791 7.82250 7.88132 8.47819 8.67749 9.07154 9.60732 11.11502 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.006953 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.457042 B = 4026.345861 C = 4812.972351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.134 4.134 3 C -0.121 4.121 4 C 0.157 3.843 5 N -0.621 5.621 6 C 0.104 3.896 7 C -0.115 4.115 8 C 0.052 3.948 9 C -0.096 4.096 10 C -0.124 4.124 11 C 0.041 3.959 12 N -0.464 5.464 13 C 0.141 3.859 14 C -0.503 4.503 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.900 5.900 18 Si 0.867 3.133 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.511 3.489 23 O -0.516 6.516 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.014 0.986 42 H 0.017 0.983 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.217 9.610 0.789 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.135 4.135 3 C -0.178 4.178 4 C 0.035 3.965 5 N -0.356 5.356 6 C -0.019 4.019 7 C -0.153 4.153 8 C -0.042 4.042 9 C -0.135 4.135 10 C -0.162 4.162 11 C -0.087 4.087 12 N -0.187 5.187 13 C 0.015 3.985 14 C -0.541 4.541 15 H 0.099 0.901 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.694 3.306 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.190 1.190 22 C 0.298 3.702 23 O -0.390 6.390 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.598 9.441 0.793 19.986 hybrid contribution -0.228 0.401 1.838 1.895 sum -17.826 9.841 2.631 20.531 Atomic orbital electron populations 1.23660 0.95073 1.01752 1.02064 1.22206 0.95572 0.96503 0.99200 1.20858 1.01302 0.94231 1.01373 1.20383 0.99954 0.93371 0.82811 1.48468 1.20381 1.53697 1.13067 1.22153 0.93634 0.94502 0.91605 1.22553 0.94758 0.99691 0.98257 1.22184 0.95443 0.95014 0.91560 1.22061 0.98219 0.96533 0.96675 1.22390 0.94291 0.99325 1.00188 1.23059 0.96288 0.90582 0.98755 1.65470 0.99152 1.21942 1.32169 1.20525 0.95346 0.94538 0.88129 1.20932 1.07619 1.28889 0.96694 0.90133 1.24835 0.94810 0.95073 0.98325 1.69885 1.17181 1.32799 1.34105 0.86964 0.78442 0.79025 0.86173 1.20288 1.21084 1.18959 1.21539 0.80681 0.79115 0.88905 1.90670 1.39153 1.37920 1.71227 0.88480 0.88500 0.90991 0.91942 0.91772 0.90069 0.89643 0.90748 0.91483 0.89033 0.88826 0.90258 0.92014 0.91199 0.91919 0.89878 0.92867 0.96811 0.96505 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 13.93 29.02 0.40 -1.37 16 2 C -0.13 -1.55 5.63 -101.07 -0.57 -2.12 16 3 C -0.12 -1.44 10.05 36.01 0.36 -1.08 16 4 C 0.16 2.08 6.02 -5.20 -0.03 2.05 16 5 N -0.62 -9.39 2.93 -173.90 -0.51 -9.90 16 6 C 0.10 1.24 7.37 -2.94 -0.02 1.22 16 7 C -0.11 -1.60 6.29 -25.53 -0.16 -1.76 16 8 C 0.05 0.91 0.56 -132.25 -0.07 0.83 16 9 C -0.10 -1.39 6.17 -25.78 -0.16 -1.55 16 10 C -0.12 -1.91 7.01 -25.18 -0.18 -2.09 16 11 C 0.04 0.83 5.79 -2.02 -0.01 0.82 16 12 N -0.46 -9.98 5.01 -218.57 -1.10 -11.07 16 13 C 0.14 3.60 2.62 -4.98 -0.01 3.59 16 14 C -0.50 -14.79 9.53 -34.44 -0.33 -15.11 16 15 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 18 Si 0.87 22.59 27.47 -169.99 -4.67 17.92 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.26 -6.98 6.54 56.52 0.37 -6.61 16 22 C 0.51 9.59 5.48 -11.23 -0.06 9.53 16 23 O -0.52 -11.49 14.40 5.56 0.08 -11.41 16 24 H 0.10 0.82 8.05 -52.48 -0.42 0.39 16 25 H 0.10 0.81 7.99 -52.49 -0.42 0.39 16 26 H 0.07 1.04 7.59 -51.93 -0.39 0.65 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.88 7.99 -51.93 -0.41 0.46 16 30 H 0.09 1.30 7.95 -51.93 -0.41 0.89 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.02 7.45 -51.93 -0.39 0.64 16 34 H 0.09 1.49 7.39 -51.93 -0.38 1.11 16 35 H 0.08 0.95 7.45 -51.93 -0.39 0.57 16 36 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.05 1.19 6.80 -51.93 -0.35 0.84 16 41 H 0.01 0.39 4.96 -51.93 -0.26 0.13 16 42 H 0.02 0.43 6.70 -51.93 -0.35 0.09 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -34.03 337.99 -8.40 -42.44 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.14 Total: -0.59 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.94 Total: -5.02 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.83 Total: -48.43 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.03 -8.40 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.213 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds