Wall clock time and date at job start Tue Mar 31 2020 00:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99823 * 2 1 4 4 C 1.50695 * 119.99961 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47095 * 95.00147 * 4 2 1 6 6 C 1.46875 * 124.37730 * 269.98139 * 5 4 2 7 7 C 1.54708 * 105.52542 * 196.85510 * 6 5 4 8 8 C 1.53582 * 101.50786 * 335.50734 * 7 6 5 9 9 C 1.53320 * 111.07992 * 262.64627 * 8 7 6 10 10 C 1.54499 * 104.75787 * 216.58634 * 9 8 7 11 11 C 1.54460 * 105.04277 * 359.26400 * 10 9 8 12 12 N 1.47402 * 111.07931 * 144.99240 * 8 7 6 13 13 C 1.46896 * 110.99726 * 278.34688 * 12 8 7 14 14 C 1.50704 * 109.46994 * 170.00151 * 13 12 8 15 15 H 1.08007 * 119.99808 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00347 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00313 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99721 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46892 * 90.00174 * 18 16 14 20 20 H 1.48498 * 109.47061 * 209.99501 * 18 16 14 21 21 H 1.48496 * 109.47441 * 329.99975 * 18 16 14 22 22 C 1.34761 * 124.37040 * 90.02517 * 5 4 2 23 23 O 1.21282 * 125.14322 * 358.95310 * 22 5 4 24 24 H 1.08004 * 120.00320 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00211 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46686 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47090 * 299.99490 * 3 2 1 28 28 H 1.09004 * 109.47210 * 59.99756 * 3 2 1 29 29 H 1.09000 * 109.47213 * 335.00359 * 4 2 1 30 30 H 1.09005 * 109.47012 * 214.99875 * 4 2 1 31 31 H 1.09002 * 110.23792 * 315.86801 * 6 5 4 32 32 H 1.09006 * 110.23698 * 77.75536 * 6 5 4 33 33 H 1.09000 * 111.01640 * 217.45382 * 7 6 5 34 34 H 1.08997 * 111.02293 * 93.56047 * 7 6 5 35 35 H 1.08996 * 110.38251 * 335.40796 * 9 8 7 36 36 H 1.09002 * 110.38075 * 97.76797 * 9 8 7 37 37 H 1.09001 * 110.32925 * 118.15606 * 10 9 8 38 38 H 1.09001 * 110.32828 * 240.37736 * 10 9 8 39 39 H 1.09001 * 110.37737 * 142.37453 * 11 10 9 40 40 H 1.08995 * 110.37978 * 264.61491 * 11 10 9 41 41 H 1.08995 * 109.47258 * 289.99773 * 13 12 8 42 42 H 1.08996 * 109.47311 * 50.00380 * 13 12 8 43 43 H 0.97004 * 120.00172 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3752 6 6 1.5635 -2.4782 -2.2593 7 6 2.4922 -2.9561 -3.4007 8 6 3.5825 -1.8747 -3.3817 9 6 3.3130 -0.8012 -4.4427 10 6 4.7112 -0.4109 -4.9716 11 6 5.7020 -1.2767 -4.1625 12 7 4.9014 -2.4457 -3.7091 13 6 5.5100 -3.0751 -2.5296 14 6 6.7293 -3.8550 -2.9494 15 1 7.0224 -3.8809 -3.9886 16 6 7.4700 -4.5363 -2.0070 17 7 8.5338 -5.2173 -2.3734 18 14 6.9626 -4.4921 -0.2098 19 1 6.0334 -5.6162 0.0700 20 1 8.1678 -4.6211 0.6481 21 1 6.2833 -3.2041 0.0813 22 6 3.5527 -1.3034 -1.9928 23 8 4.4240 -0.6176 -1.5014 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 3.1351 1.1059 0.0005 27 1 1.8002 1.8767 -0.8901 28 1 1.8001 1.8768 0.8900 29 1 1.4385 -2.0852 0.4352 30 1 2.9742 -1.1985 0.5900 31 1 1.1621 -3.3340 -1.7166 32 1 0.7512 -1.8724 -2.6611 33 1 1.9661 -2.9641 -4.3553 34 1 2.9112 -3.9375 -3.1788 35 1 2.7025 -1.2087 -5.2485 36 1 2.8226 0.0622 -3.9932 37 1 4.7909 -0.6378 -6.0347 38 1 4.9012 0.6477 -4.7943 39 1 6.5258 -1.6039 -4.7968 40 1 6.0815 -0.7193 -3.3062 41 1 5.7999 -2.3043 -1.8155 42 1 4.7901 -3.7487 -2.0650 43 1 9.0547 -5.6970 -1.7105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:27 Heat of formation + Delta-G solvation = -24.517647 kcal Electronic energy + Delta-G solvation = -23359.838730 eV Core-core repulsion = 20211.564407 eV Total energy + Delta-G solvation = -3148.274323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34105 -38.87430 -37.68810 -36.31217 -35.15389 -33.11474 -32.26991 -28.98311 -28.73253 -28.37131 -27.42311 -24.81437 -23.79341 -22.28944 -21.78721 -20.17129 -19.40681 -18.96109 -17.64124 -17.25560 -16.83035 -16.37909 -16.17956 -15.83013 -15.56001 -15.19314 -14.98013 -14.70798 -14.64079 -14.07786 -14.04809 -13.89620 -13.64568 -13.16648 -13.12690 -12.84452 -12.75081 -12.63772 -12.36641 -12.32292 -12.17198 -12.04172 -12.00535 -11.77292 -11.54035 -11.45568 -11.03006 -10.85478 -10.14104 -9.70423 -9.17031 -8.36846 -6.38225 1.09778 1.18854 1.23849 1.35936 1.51689 2.24379 2.25906 2.95358 3.04964 3.46583 3.57209 3.68335 3.83523 3.88815 3.94752 4.17147 4.24904 4.34317 4.40108 4.54628 4.61816 4.62728 4.65961 4.70218 4.74359 4.76067 4.86821 4.95661 5.00749 5.04119 5.06628 5.07481 5.11069 5.23420 5.31442 5.44416 5.60250 5.63459 5.84276 5.85443 6.05581 6.09807 6.47380 6.66258 7.17268 7.24466 8.79861 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.006953 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.457042 B = 4026.345861 C = 4812.972351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.162 4.162 3 C -0.116 4.116 4 C 0.153 3.847 5 N -0.617 5.617 6 C 0.105 3.895 7 C -0.112 4.112 8 C 0.040 3.960 9 C -0.088 4.088 10 C -0.114 4.114 11 C 0.037 3.963 12 N -0.475 5.475 13 C 0.165 3.835 14 C -0.512 4.512 15 H 0.043 0.957 16 C 0.018 3.982 17 N -0.940 5.940 18 Si 0.935 3.065 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.276 1.276 22 C 0.496 3.504 23 O -0.568 6.568 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.019 0.981 41 H -0.013 1.013 42 H 0.017 0.983 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.695 9.822 0.936 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C -0.172 4.172 4 C 0.032 3.968 5 N -0.351 5.351 6 C -0.017 4.017 7 C -0.150 4.150 8 C -0.054 4.054 9 C -0.126 4.126 10 C -0.152 4.152 11 C -0.091 4.091 12 N -0.198 5.198 13 C 0.037 3.963 14 C -0.550 4.550 15 H 0.061 0.939 16 C -0.180 4.180 17 N -0.581 5.581 18 Si 0.759 3.241 19 H -0.179 1.179 20 H -0.200 1.200 21 H -0.201 1.201 22 C 0.283 3.717 23 O -0.446 6.446 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.005 0.995 42 H 0.035 0.965 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.134 9.630 0.932 24.156 hybrid contribution 1.144 0.357 1.747 2.119 sum -20.990 9.986 2.679 23.398 Atomic orbital electron populations 1.23902 0.93902 1.03461 0.97765 1.21985 0.96282 0.95059 1.02988 1.20778 0.99024 0.95228 1.02207 1.20506 0.99225 0.95535 0.81536 1.48644 1.19691 1.52830 1.13934 1.22447 0.93212 0.95504 0.90545 1.22637 0.94068 0.97099 1.01180 1.22503 0.93780 0.97095 0.92012 1.22132 0.97732 0.96087 0.96648 1.22357 0.93587 0.98786 1.00500 1.23027 0.97329 0.90873 0.97892 1.65351 1.01160 1.23040 1.30255 1.20053 0.93828 0.93314 0.89069 1.21161 1.09360 1.29367 0.95108 0.93878 1.25652 0.94754 0.94679 1.02947 1.70011 1.18372 1.33839 1.35867 0.85898 0.78649 0.78978 0.80570 1.17892 1.20017 1.20131 1.21814 0.81200 0.78950 0.89691 1.90641 1.41201 1.40400 1.72363 0.86955 0.86431 0.94781 0.91785 0.90289 0.87085 0.93068 0.88307 0.87841 0.85326 0.91278 0.86626 0.90901 0.88949 0.90882 0.92016 0.96246 0.99515 0.96492 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 13.93 67.78 0.94 -1.23 16 2 C -0.16 -3.38 5.63 -16.49 -0.09 -3.48 16 3 C -0.12 -2.70 10.05 71.24 0.72 -1.98 16 4 C 0.15 3.83 6.02 85.63 0.52 4.35 16 5 N -0.62 -17.49 2.93 -822.51 -2.41 -19.89 16 6 C 0.10 2.02 7.37 86.89 0.64 2.66 16 7 C -0.11 -2.77 6.29 31.37 0.20 -2.58 16 8 C 0.04 1.34 0.56 2.83 0.00 1.34 16 9 C -0.09 -2.27 6.17 31.21 0.19 -2.08 16 10 C -0.11 -3.40 7.01 31.60 0.22 -3.18 16 11 C 0.04 1.57 5.79 86.44 0.50 2.07 16 12 N -0.48 -20.92 5.01 -845.42 -4.24 -25.16 16 13 C 0.16 8.76 2.62 85.56 0.22 8.99 16 14 C -0.51 -31.61 9.53 25.60 0.24 -31.36 16 15 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 16 C 0.02 1.09 5.47 84.65 0.46 1.56 16 17 N -0.94 -60.84 13.96 21.44 0.30 -60.54 16 18 Si 0.93 48.08 27.47 68.60 1.88 49.96 16 19 H -0.25 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.28 -14.64 6.54 99.48 0.65 -13.99 16 22 C 0.50 18.62 5.48 87.50 0.48 19.10 16 23 O -0.57 -26.63 14.40 -3.04 -0.04 -26.68 16 24 H 0.11 1.32 8.05 -2.91 -0.02 1.29 16 25 H 0.12 1.24 7.99 -2.91 -0.02 1.21 16 26 H 0.03 1.04 7.59 -2.38 -0.02 1.02 16 27 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.11 2.04 7.99 -2.39 -0.02 2.02 16 30 H 0.05 1.61 7.95 -2.38 -0.02 1.59 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.13 2.21 7.45 -2.39 -0.02 2.19 16 34 H 0.07 2.07 7.39 -2.39 -0.02 2.05 16 35 H 0.12 2.17 7.45 -2.39 -0.02 2.15 16 36 H 0.07 1.76 7.85 -2.39 -0.02 1.74 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.02 0.94 6.80 -2.39 -0.02 0.92 16 41 H -0.01 -0.75 4.96 -2.39 -0.01 -0.76 16 42 H 0.02 0.89 6.70 -2.39 -0.02 0.88 16 43 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -80.76 337.99 1.66 -79.10 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.92 Total: 9.03 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 5.25 Total: -5.83 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -6.35 Total: -105.59 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.04 Total: -26.68 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.88 Total: 49.96 kcal Total: -80.76 1.66 -79.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.585 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds