Wall clock time and date at job start Tue Mar 31 2020 00:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00315 * 2 1 4 4 C 1.50700 * 119.99775 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47435 * 95.23954 * 4 2 1 6 6 C 1.46881 * 124.37134 * 275.43386 * 5 4 2 7 7 C 1.54851 * 105.43683 * 163.10099 * 6 5 4 8 8 C 1.53614 * 101.45270 * 24.83758 * 7 6 5 9 9 C 1.53888 * 110.68136 * 96.40071 * 8 7 6 10 10 C 1.55325 * 101.53542 * 156.80596 * 9 8 7 11 11 C 1.54406 * 103.13326 * 325.40949 * 10 9 8 12 12 N 1.46722 * 111.40259 * 214.19509 * 8 7 6 13 13 C 1.46909 * 111.00053 * 94.57145 * 12 8 7 14 14 C 1.50692 * 109.47272 * 196.33247 * 13 12 8 15 15 H 1.08003 * 119.99761 * 5.28768 * 14 13 12 16 16 C 1.37874 * 120.00105 * 185.28504 * 14 13 12 17 17 N 1.31517 * 119.99802 * 187.91210 * 16 14 13 18 18 Si 1.86795 * 119.99998 * 7.91746 * 16 14 13 19 19 H 1.48507 * 109.47429 * 95.07602 * 18 16 14 20 20 H 1.48502 * 109.47429 * 215.07457 * 18 16 14 21 21 H 1.48500 * 109.47086 * 335.07597 * 18 16 14 22 22 C 1.34746 * 124.37109 * 95.73488 * 5 4 2 23 23 O 1.21273 * 125.13509 * 0.96450 * 22 5 4 24 24 H 1.07996 * 119.99875 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99787 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47014 * 271.77230 * 3 2 1 27 27 H 1.09000 * 109.46893 * 31.76685 * 3 2 1 28 28 H 1.08996 * 109.47510 * 151.77191 * 3 2 1 29 29 H 1.09000 * 109.47049 * 335.23334 * 4 2 1 30 30 H 1.09011 * 109.47165 * 215.24062 * 4 2 1 31 31 H 1.08997 * 110.23454 * 282.22852 * 6 5 4 32 32 H 1.08999 * 110.23393 * 44.20144 * 6 5 4 33 33 H 1.09002 * 111.21234 * 266.72612 * 7 6 5 34 34 H 1.09000 * 110.91707 * 142.81357 * 7 6 5 35 35 H 1.08997 * 111.00927 * 274.86367 * 9 8 7 36 36 H 1.08995 * 111.01213 * 38.73567 * 9 8 7 37 37 H 1.09003 * 110.68098 * 207.00173 * 10 9 8 38 38 H 1.08997 * 110.83439 * 83.89820 * 10 9 8 39 39 H 1.09006 * 109.89404 * 262.79896 * 11 10 9 40 40 H 1.08995 * 109.89096 * 141.59229 * 11 10 9 41 41 H 1.09002 * 109.46947 * 316.33830 * 13 12 8 42 42 H 1.09001 * 109.46565 * 76.33070 * 13 12 8 43 43 H 0.97007 * 119.99408 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4169 -1.6644 -1.3762 6 6 1.5250 -2.3732 -2.3033 7 6 2.1285 -2.1453 -3.7111 8 6 3.6039 -1.8846 -3.3718 9 6 4.4311 -3.1740 -3.5176 10 6 5.8585 -2.6036 -3.7409 11 6 5.5987 -1.3149 -4.5507 12 7 4.2013 -0.9115 -4.2933 13 6 4.1394 0.4469 -3.7373 14 6 4.3789 1.4505 -4.8356 15 1 4.4741 1.1188 -5.8590 16 6 4.4766 2.7923 -4.5339 17 7 4.5293 3.6816 -5.5014 18 14 4.5341 3.3471 -2.7512 19 1 5.9484 3.5141 -2.3300 20 1 3.8202 4.6418 -2.6123 21 1 3.8796 2.3264 -1.8938 22 6 3.6042 -1.3925 -1.9523 23 8 4.5330 -0.8348 -1.4073 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 2.2177 1.6356 -1.0271 27 1 1.4886 2.0566 0.5410 28 1 3.0294 1.1670 0.4860 29 1 1.4370 -2.0865 0.4296 30 1 2.9721 -1.2004 0.5925 31 1 1.5039 -3.4370 -2.0671 32 1 0.5196 -1.9551 -2.2530 33 1 1.6800 -1.2787 -4.1969 34 1 2.0212 -3.0365 -4.3294 35 1 4.3871 -3.7715 -2.6071 36 1 4.1025 -3.7537 -4.3801 37 1 6.4671 -3.3027 -4.3145 38 1 6.3361 -2.3707 -2.7892 39 1 5.7385 -1.5105 -5.6140 40 1 6.2783 -0.5280 -4.2236 41 1 3.1557 0.6156 -3.2991 42 1 4.9038 0.5599 -2.9686 43 1 4.5984 4.6257 -5.2892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:32 Heat of formation + Delta-G solvation = 1.415294 kcal Electronic energy + Delta-G solvation = -23665.683705 eV Core-core repulsion = 20518.533919 eV Total energy + Delta-G solvation = -3147.149786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99173 -37.55691 -36.33533 -35.17352 -32.98702 -31.17312 -31.10426 -27.64650 -27.28385 -26.82832 -26.30104 -23.45641 -21.98569 -21.07056 -20.28718 -18.77550 -18.32870 -16.82175 -16.26134 -15.77941 -15.71198 -14.99248 -14.69563 -14.37512 -14.04504 -13.70411 -13.44091 -13.29819 -12.91766 -12.75582 -12.67016 -12.44482 -11.99044 -11.97773 -11.66917 -11.57877 -11.50450 -11.22137 -11.18038 -10.80586 -10.70577 -10.43181 -10.28501 -10.08174 -9.79303 -9.51267 -9.27421 -9.06508 -8.54112 -8.46723 -7.34212 -6.00456 -3.95729 2.06852 2.91887 3.34661 3.36936 3.42548 3.51046 4.45135 4.49960 4.67114 4.74019 4.83522 4.89875 5.06084 5.08573 5.29252 5.32075 5.38811 5.43524 5.50709 5.57367 5.65361 5.73250 5.83597 5.89779 5.93131 5.97360 6.04087 6.12416 6.24336 6.26764 6.36729 6.58994 6.60782 6.67223 6.72414 6.83831 6.88082 7.11901 7.33706 7.67070 7.87564 7.95695 8.50692 8.71801 9.10718 9.63527 11.12307 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.009713 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.190050 B = 2882.164140 C = 4274.182982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 C -0.124 4.124 4 C 0.160 3.840 5 N -0.621 5.621 6 C 0.104 3.896 7 C -0.113 4.113 8 C 0.064 3.936 9 C -0.104 4.104 10 C -0.143 4.143 11 C 0.053 3.947 12 N -0.485 5.485 13 C 0.155 3.845 14 C -0.507 4.507 15 H 0.080 0.920 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.864 3.136 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.255 1.255 22 C 0.513 3.487 23 O -0.516 6.516 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -14.743 9.325 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.135 4.135 3 C -0.181 4.181 4 C 0.038 3.962 5 N -0.357 5.357 6 C -0.019 4.019 7 C -0.151 4.151 8 C -0.030 4.030 9 C -0.142 4.142 10 C -0.181 4.181 11 C -0.075 4.075 12 N -0.209 5.209 13 C 0.029 3.971 14 C -0.545 4.545 15 H 0.098 0.902 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.691 3.309 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.179 1.179 22 C 0.299 3.701 23 O -0.390 6.390 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.720 -14.202 9.177 18.195 hybrid contribution 0.312 0.666 1.686 1.839 sum -6.408 -13.536 10.863 18.501 Atomic orbital electron populations 1.23655 0.94968 1.01728 1.02228 1.22197 0.95666 0.96498 0.99135 1.20984 0.99815 0.93958 1.03312 1.20343 0.99818 0.93293 0.82740 1.48437 1.16048 1.58366 1.12819 1.22170 0.94362 0.96106 0.89299 1.22550 0.93619 1.03868 0.95053 1.22107 0.96744 0.94991 0.89184 1.22479 0.95123 0.94897 1.01715 1.22903 0.96314 0.97963 1.00916 1.22769 0.90034 0.95233 0.99482 1.63757 1.15737 1.02628 1.38742 1.20542 0.95969 0.84986 0.95610 1.21010 1.48686 0.89854 0.94965 0.90241 1.24857 0.94915 0.96590 0.96747 1.69926 1.50925 1.01355 1.31633 0.87048 0.78756 0.78337 0.86753 1.20469 1.21467 1.17913 1.21377 0.81713 0.77992 0.88973 1.90676 1.37878 1.41244 1.69162 0.88367 0.88607 0.90530 0.92097 0.91828 0.90306 0.89581 0.91481 0.90775 0.88823 0.89275 0.91561 0.89780 0.91187 0.91435 0.91023 0.91836 0.96657 0.96706 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 13.89 29.01 0.40 -1.79 16 2 C -0.13 -1.87 5.64 -101.07 -0.57 -2.44 16 3 C -0.12 -2.03 10.03 36.01 0.36 -1.67 16 4 C 0.16 2.13 6.15 -5.19 -0.03 2.10 16 5 N -0.62 -9.42 2.93 -173.80 -0.51 -9.93 16 6 C 0.10 1.24 7.37 -2.86 -0.02 1.21 16 7 C -0.11 -1.57 6.47 -25.44 -0.16 -1.74 16 8 C 0.06 1.11 0.66 -132.29 -0.09 1.02 16 9 C -0.10 -1.47 5.97 -25.04 -0.15 -1.62 16 10 C -0.14 -2.23 6.85 -24.76 -0.17 -2.40 16 11 C 0.05 1.04 6.55 -2.64 -0.02 1.02 16 12 N -0.49 -10.42 4.79 -219.62 -1.05 -11.47 16 13 C 0.16 3.97 2.26 -4.97 -0.01 3.96 16 14 C -0.51 -14.95 9.50 -34.45 -0.33 -15.28 16 15 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 18 Si 0.86 22.70 27.44 -169.99 -4.66 18.04 16 19 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.25 -6.52 5.17 56.52 0.29 -6.23 16 22 C 0.51 9.67 5.21 -11.22 -0.06 9.61 16 23 O -0.52 -11.63 15.37 5.56 0.09 -11.55 16 24 H 0.10 1.11 8.05 -52.49 -0.42 0.69 16 25 H 0.10 0.92 7.99 -52.49 -0.42 0.50 16 26 H 0.08 1.52 6.63 -51.93 -0.34 1.18 16 27 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 28 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 29 H 0.08 0.80 7.98 -51.93 -0.41 0.38 16 30 H 0.09 1.24 7.76 -51.92 -0.40 0.83 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.52 8.12 -51.93 -0.42 1.09 16 34 H 0.09 0.99 7.63 -51.93 -0.40 0.59 16 35 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 36 H 0.08 1.02 7.78 -51.93 -0.40 0.61 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.41 7.36 -51.93 -0.38 1.03 16 41 H 0.02 0.41 7.19 -51.93 -0.37 0.04 16 42 H 0.02 0.42 4.92 -51.93 -0.26 0.16 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -34.26 338.52 -8.48 -42.74 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.27 Total: 0.60 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.94 Total: -5.98 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.79 Total: -48.95 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.66 Total: 18.04 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.26 -8.48 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.157 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds