Wall clock time and date at job start Tue Mar 31 2020 00:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00315 * 2 1 4 4 C 1.50700 * 119.99775 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47435 * 95.23954 * 4 2 1 6 6 C 1.46881 * 124.37134 * 275.43386 * 5 4 2 7 7 C 1.54851 * 105.43683 * 163.10099 * 6 5 4 8 8 C 1.53614 * 101.45270 * 24.83758 * 7 6 5 9 9 C 1.53888 * 110.68136 * 96.40071 * 8 7 6 10 10 C 1.55325 * 101.53542 * 156.80596 * 9 8 7 11 11 C 1.54406 * 103.13326 * 325.40949 * 10 9 8 12 12 N 1.46722 * 111.40259 * 214.19509 * 8 7 6 13 13 C 1.46909 * 111.00053 * 94.57145 * 12 8 7 14 14 C 1.50692 * 109.47272 * 196.33247 * 13 12 8 15 15 H 1.08003 * 119.99761 * 5.28768 * 14 13 12 16 16 C 1.37874 * 120.00105 * 185.28504 * 14 13 12 17 17 N 1.31517 * 119.99802 * 187.91210 * 16 14 13 18 18 Si 1.86795 * 119.99998 * 7.91746 * 16 14 13 19 19 H 1.48507 * 109.47429 * 95.07602 * 18 16 14 20 20 H 1.48502 * 109.47429 * 215.07457 * 18 16 14 21 21 H 1.48500 * 109.47086 * 335.07597 * 18 16 14 22 22 C 1.34746 * 124.37109 * 95.73488 * 5 4 2 23 23 O 1.21273 * 125.13509 * 0.96450 * 22 5 4 24 24 H 1.07996 * 119.99875 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99787 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47014 * 271.77230 * 3 2 1 27 27 H 1.09000 * 109.46893 * 31.76685 * 3 2 1 28 28 H 1.08996 * 109.47510 * 151.77191 * 3 2 1 29 29 H 1.09000 * 109.47049 * 335.23334 * 4 2 1 30 30 H 1.09011 * 109.47165 * 215.24062 * 4 2 1 31 31 H 1.08997 * 110.23454 * 282.22852 * 6 5 4 32 32 H 1.08999 * 110.23393 * 44.20144 * 6 5 4 33 33 H 1.09002 * 111.21234 * 266.72612 * 7 6 5 34 34 H 1.09000 * 110.91707 * 142.81357 * 7 6 5 35 35 H 1.08997 * 111.00927 * 274.86367 * 9 8 7 36 36 H 1.08995 * 111.01213 * 38.73567 * 9 8 7 37 37 H 1.09003 * 110.68098 * 207.00173 * 10 9 8 38 38 H 1.08997 * 110.83439 * 83.89820 * 10 9 8 39 39 H 1.09006 * 109.89404 * 262.79896 * 11 10 9 40 40 H 1.08995 * 109.89096 * 141.59229 * 11 10 9 41 41 H 1.09002 * 109.46947 * 316.33830 * 13 12 8 42 42 H 1.09001 * 109.46565 * 76.33070 * 13 12 8 43 43 H 0.97007 * 119.99408 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4169 -1.6644 -1.3762 6 6 1.5250 -2.3732 -2.3033 7 6 2.1285 -2.1453 -3.7111 8 6 3.6039 -1.8846 -3.3718 9 6 4.4311 -3.1740 -3.5176 10 6 5.8585 -2.6036 -3.7409 11 6 5.5987 -1.3149 -4.5507 12 7 4.2013 -0.9115 -4.2933 13 6 4.1394 0.4469 -3.7373 14 6 4.3789 1.4505 -4.8356 15 1 4.4741 1.1188 -5.8590 16 6 4.4766 2.7923 -4.5339 17 7 4.5293 3.6816 -5.5014 18 14 4.5341 3.3471 -2.7512 19 1 5.9484 3.5141 -2.3300 20 1 3.8202 4.6418 -2.6123 21 1 3.8796 2.3264 -1.8938 22 6 3.6042 -1.3925 -1.9523 23 8 4.5330 -0.8348 -1.4073 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 2.2177 1.6356 -1.0271 27 1 1.4886 2.0566 0.5410 28 1 3.0294 1.1670 0.4860 29 1 1.4370 -2.0865 0.4296 30 1 2.9721 -1.2004 0.5925 31 1 1.5039 -3.4370 -2.0671 32 1 0.5196 -1.9551 -2.2530 33 1 1.6800 -1.2787 -4.1969 34 1 2.0212 -3.0365 -4.3294 35 1 4.3871 -3.7715 -2.6071 36 1 4.1025 -3.7537 -4.3801 37 1 6.4671 -3.3027 -4.3145 38 1 6.3361 -2.3707 -2.7892 39 1 5.7385 -1.5105 -5.6140 40 1 6.2783 -0.5280 -4.2236 41 1 3.1557 0.6156 -3.2991 42 1 4.9038 0.5599 -2.9686 43 1 4.5984 4.6257 -5.2892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:31 Heat of formation + Delta-G solvation = -23.257646 kcal Electronic energy + Delta-G solvation = -23666.753604 eV Core-core repulsion = 20518.533919 eV Total energy + Delta-G solvation = -3148.219685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31754 -38.89016 -37.69942 -36.36048 -35.11210 -33.01110 -32.29506 -28.96270 -28.76825 -28.44681 -27.37928 -24.81445 -23.80219 -22.27810 -21.80332 -20.08520 -19.48257 -18.97538 -17.67211 -17.18600 -16.95708 -16.46125 -16.25605 -15.65296 -15.54122 -14.95140 -14.90475 -14.78911 -14.60086 -14.27174 -14.15427 -13.94883 -13.69363 -13.12778 -13.02284 -12.93871 -12.76296 -12.60368 -12.49547 -12.26396 -12.23170 -12.03738 -11.87204 -11.75597 -11.56291 -11.47895 -10.91935 -10.83499 -10.16449 -9.68428 -9.03341 -8.39240 -6.38561 1.04885 1.17891 1.21432 1.37505 1.56526 2.23244 2.27941 2.94242 3.06461 3.48360 3.56052 3.74350 3.83051 3.88082 3.93041 4.16733 4.20052 4.36627 4.40737 4.51246 4.55072 4.62366 4.65743 4.71343 4.75567 4.79663 4.89166 4.95011 4.95756 4.99879 5.01710 5.04934 5.17668 5.25945 5.35338 5.48111 5.57335 5.64838 5.82469 5.89380 6.12090 6.20599 6.51886 6.67112 7.20495 7.24684 8.76998 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.009713 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.190050 B = 2882.164140 C = 4274.182982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.169 4.169 3 C -0.121 4.121 4 C 0.159 3.841 5 N -0.617 5.617 6 C 0.104 3.896 7 C -0.110 4.110 8 C 0.049 3.951 9 C -0.091 4.091 10 C -0.133 4.133 11 C 0.047 3.953 12 N -0.500 5.500 13 C 0.185 3.815 14 C -0.513 4.513 15 H 0.044 0.956 16 C 0.021 3.979 17 N -0.937 5.937 18 Si 0.925 3.075 19 H -0.279 1.279 20 H -0.274 1.274 21 H -0.253 1.253 22 C 0.498 3.502 23 O -0.569 6.569 24 H 0.101 0.899 25 H 0.130 0.870 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.022 0.978 41 H 0.001 0.999 42 H -0.008 1.008 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -18.005 10.754 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.170 4.170 3 C -0.178 4.178 4 C 0.038 3.962 5 N -0.351 5.351 6 C -0.017 4.017 7 C -0.148 4.148 8 C -0.045 4.045 9 C -0.129 4.129 10 C -0.172 4.172 11 C -0.081 4.081 12 N -0.223 5.223 13 C 0.058 3.942 14 C -0.551 4.551 15 H 0.063 0.937 16 C -0.177 4.177 17 N -0.578 5.578 18 Si 0.750 3.250 19 H -0.205 1.205 20 H -0.199 1.199 21 H -0.177 1.177 22 C 0.286 3.714 23 O -0.448 6.448 24 H 0.120 0.880 25 H 0.148 0.852 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.142 0.858 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.019 0.981 42 H 0.010 0.990 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.312 -17.498 10.607 22.481 hybrid contribution 1.034 1.673 1.182 2.295 sum -8.278 -15.825 11.789 21.399 Atomic orbital electron populations 1.23957 0.93912 1.03535 0.97646 1.22088 0.96511 0.95393 1.03013 1.20893 0.99925 0.96535 1.00419 1.20503 0.99677 0.94388 0.81619 1.48613 1.15248 1.57299 1.13913 1.22482 0.94060 0.98345 0.86837 1.22612 0.90755 1.04297 0.97104 1.22457 0.99156 0.95109 0.87785 1.22551 0.92625 0.93543 1.04155 1.22828 0.98308 0.96399 0.99643 1.22803 0.88552 0.96257 1.00502 1.63655 1.16933 1.01555 1.40164 1.19966 0.94031 0.86971 0.93229 1.21259 1.48201 0.91125 0.94541 0.93736 1.25597 0.94658 0.96785 1.00694 1.70032 1.52166 1.01917 1.33673 0.86079 0.78709 0.78349 0.81849 1.20493 1.19883 1.17709 1.21693 0.82338 0.77685 0.89731 1.90641 1.40017 1.43762 1.70352 0.88024 0.85202 0.94977 0.90227 0.93723 0.85809 0.91697 0.87014 0.88945 0.91858 0.85433 0.89329 0.86567 0.87696 0.93335 0.90380 0.95914 0.98093 0.98985 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 13.89 67.78 0.94 -2.02 16 2 C -0.17 -4.40 5.64 -16.49 -0.09 -4.50 16 3 C -0.12 -4.03 10.03 71.24 0.71 -3.32 16 4 C 0.16 3.86 6.15 85.63 0.53 4.38 16 5 N -0.62 -17.21 2.93 -822.19 -2.41 -19.62 16 6 C 0.10 1.98 7.37 86.94 0.64 2.62 16 7 C -0.11 -2.72 6.47 31.43 0.20 -2.52 16 8 C 0.05 1.61 0.66 3.18 0.00 1.62 16 9 C -0.09 -2.25 5.97 31.69 0.19 -2.06 16 10 C -0.13 -4.01 6.85 31.87 0.22 -3.80 16 11 C 0.05 1.90 6.55 86.62 0.57 2.46 16 12 N -0.50 -21.95 4.79 -848.75 -4.07 -26.02 16 13 C 0.19 9.98 2.26 85.55 0.19 10.18 16 14 C -0.51 -31.96 9.50 25.60 0.24 -31.72 16 15 H 0.04 3.01 8.06 -2.91 -0.02 2.99 16 16 C 0.02 1.31 5.47 84.65 0.46 1.77 16 17 N -0.94 -61.24 13.96 21.45 0.30 -60.94 16 18 Si 0.93 49.40 27.44 68.60 1.88 51.28 16 19 H -0.28 -14.82 7.11 99.48 0.71 -14.11 16 20 H -0.27 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.25 -13.40 5.17 99.48 0.51 -12.89 16 22 C 0.50 18.60 5.21 87.52 0.46 19.06 16 23 O -0.57 -26.68 15.37 -3.01 -0.05 -26.72 16 24 H 0.10 1.92 8.05 -2.91 -0.02 1.90 16 25 H 0.13 1.67 7.99 -2.91 -0.02 1.65 16 26 H 0.03 1.32 6.63 -2.39 -0.02 1.31 16 27 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 28 H 0.04 1.59 8.07 -2.39 -0.02 1.57 16 29 H 0.12 1.87 7.98 -2.39 -0.02 1.85 16 30 H 0.06 1.84 7.76 -2.38 -0.02 1.82 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 34 H 0.13 2.16 7.63 -2.39 -0.02 2.14 16 35 H 0.09 1.87 8.00 -2.39 -0.02 1.85 16 36 H 0.12 2.17 7.78 -2.39 -0.02 2.15 16 37 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 40 H 0.02 1.07 7.36 -2.39 -0.02 1.05 16 41 H 0.00 0.06 7.19 -2.39 -0.02 0.04 16 42 H -0.01 -0.44 4.92 -2.39 -0.01 -0.45 16 43 H 0.27 16.27 8.31 -92.70 -0.77 15.50 16 Total: -1.00 -82.49 338.52 1.70 -80.78 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.78 Total: 9.08 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 5.27 Total: -7.84 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -6.18 Total: -106.58 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.88 Total: 51.28 kcal Total: -82.49 1.70 -80.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.526 kcal (2) G-P(sol) polarization free energy of solvation -82.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds