Wall clock time and date at job start Tue Mar 31 2020 00:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00048 * 2 1 4 4 C 1.50702 * 120.00038 * 180.02562 * 2 1 3 5 5 N 1.46495 * 109.47186 * 94.99667 * 4 2 1 6 6 C 1.33350 * 117.29184 * 269.98427 * 5 4 2 7 7 O 1.21283 * 118.79644 * 359.80817 * 6 5 4 8 8 C 1.50341 * 122.40561 * 179.79771 * 6 5 4 9 9 C 1.52896 * 109.30693 * 338.34990 * 8 6 5 10 10 C 1.53126 * 109.32501 * 52.84640 * 9 8 6 11 11 H 1.08998 * 111.91789 * 59.70129 * 10 9 8 12 12 C 1.44628 * 117.29093 * 90.00035 * 5 4 2 13 13 H 1.09004 * 110.92166 * 45.91881 * 12 5 4 14 14 C 1.54887 * 110.63336 * 283.03009 * 12 5 4 15 15 C 1.54523 * 102.59529 * 203.32795 * 14 12 5 16 16 N 1.47671 * 107.05167 * 22.99501 * 15 14 12 17 17 C 1.46899 * 110.99923 * 123.13401 * 16 15 14 18 18 C 1.50703 * 109.47107 * 69.87333 * 17 16 15 19 19 H 1.07996 * 119.99751 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00094 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47171 * 89.99544 * 22 20 18 24 24 H 1.48500 * 109.46632 * 209.99795 * 22 20 18 25 25 H 1.48494 * 109.47053 * 329.99231 * 22 20 18 26 26 H 1.07998 * 120.00326 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00414 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46843 * 270.00215 * 3 2 1 29 29 H 1.08999 * 109.47125 * 29.99821 * 3 2 1 30 30 H 1.08997 * 109.47455 * 150.00308 * 3 2 1 31 31 H 1.08997 * 109.46683 * 334.99658 * 4 2 1 32 32 H 1.08992 * 109.47003 * 214.99653 * 4 2 1 33 33 H 1.08999 * 109.49886 * 218.40567 * 8 6 5 34 34 H 1.08999 * 109.50081 * 98.29977 * 8 6 5 35 35 H 1.08996 * 109.49692 * 292.89384 * 9 8 6 36 36 H 1.09003 * 109.52194 * 172.81770 * 9 8 6 37 37 H 1.09000 * 110.78369 * 85.05722 * 14 12 5 38 38 H 1.08993 * 110.94862 * 321.68435 * 14 12 5 39 39 H 1.08994 * 109.92145 * 263.64191 * 15 14 12 40 40 H 1.08998 * 109.91506 * 142.34084 * 15 14 12 41 41 H 1.09002 * 109.47043 * 189.87312 * 17 16 15 42 42 H 1.09001 * 109.47354 * 309.87374 * 17 16 15 43 43 H 0.97000 * 120.00333 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4118 -1.6673 -1.3767 6 6 1.5350 -2.4089 -2.0544 7 8 0.5074 -2.7461 -1.5054 8 6 1.7734 -2.8421 -3.4741 9 6 2.7944 -1.9072 -4.1232 10 6 4.0442 -1.8313 -3.2417 11 1 4.5064 -2.8090 -3.1061 12 6 3.6784 -1.1910 -1.8873 13 1 4.4761 -1.3534 -1.1625 14 6 3.5864 0.3089 -2.2626 15 6 4.7258 0.4687 -3.2940 16 7 4.9873 -0.8694 -3.8612 17 6 4.8437 -0.8587 -5.3232 18 6 5.9762 -0.0736 -5.9334 19 1 6.7272 0.3729 -5.2986 20 6 6.0530 0.0753 -7.3019 21 7 5.1381 -0.4682 -8.0749 22 14 7.4571 1.0477 -8.0583 23 1 8.5939 0.1357 -8.3431 24 1 6.9985 1.6770 -9.3228 25 1 7.8950 2.1036 -7.1105 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 2.2451 1.6197 -1.0277 29 1 1.4744 2.0648 0.5138 30 1 3.0159 1.1748 0.5138 31 1 1.4385 -2.0856 0.4334 32 1 2.9741 -1.1991 0.5888 33 1 0.8366 -2.7997 -4.0297 34 1 2.1568 -3.8624 -3.4837 35 1 2.3618 -0.9122 -4.2274 36 1 3.0657 -2.2907 -5.1068 37 1 3.7637 0.9375 -1.3899 38 1 2.6212 0.5392 -2.7136 39 1 5.6225 0.8449 -2.8015 40 1 4.4180 1.1533 -4.0843 41 1 4.8675 -1.8819 -5.6981 42 1 3.8944 -0.3952 -5.5917 43 1 5.1919 -0.3631 -9.0377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:00 Heat of formation + Delta-G solvation = -19.224239 kcal Electronic energy + Delta-G solvation = -23107.267019 eV Core-core repulsion = 19959.222235 eV Total energy + Delta-G solvation = -3148.044784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.21159 -39.75080 -37.52616 -35.70120 -34.62329 -33.99721 -32.04815 -29.38401 -28.47511 -27.73607 -27.40618 -24.92412 -24.44643 -22.67662 -21.30347 -19.98603 -18.84994 -18.43353 -17.79120 -17.53804 -16.99401 -16.45352 -16.35798 -15.76556 -15.33927 -15.13845 -14.95593 -14.66819 -14.52323 -14.08977 -13.92942 -13.62934 -13.56940 -13.24869 -12.90186 -12.81946 -12.60305 -12.56701 -12.43009 -12.29641 -12.25329 -12.08592 -11.73210 -11.70833 -11.47444 -11.23663 -10.73770 -10.56604 -10.00382 -9.74235 -8.97943 -8.17432 -6.26524 1.12541 1.43365 1.43959 1.54648 1.56011 2.14646 2.42841 3.15548 3.24597 3.43216 3.59327 3.68431 3.90258 3.91097 4.04100 4.12332 4.23926 4.27120 4.40498 4.45667 4.49134 4.71453 4.74652 4.76663 4.81998 4.85446 4.87758 4.96063 5.01494 5.07359 5.14892 5.17993 5.20115 5.30115 5.35967 5.47718 5.69075 5.70231 5.93055 6.07089 6.32075 6.40913 6.59179 6.90132 7.08309 7.43307 8.92855 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027111 B = 0.004820 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.561003 B = 5808.090254 C = 6386.552362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C -0.125 4.125 4 C 0.136 3.864 5 N -0.579 5.579 6 C 0.520 3.480 7 O -0.584 6.584 8 C -0.127 4.127 9 C -0.136 4.136 10 C 0.063 3.937 11 H 0.101 0.899 12 C 0.149 3.851 13 H 0.122 0.878 14 C -0.145 4.145 15 C 0.051 3.949 16 N -0.528 5.528 17 C 0.210 3.790 18 C -0.522 4.522 19 H 0.061 0.939 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.264 1.264 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.004 0.996 42 H -0.026 1.026 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 0.851 16.312 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.149 4.149 3 C -0.181 4.181 4 C 0.015 3.985 5 N -0.308 5.308 6 C 0.309 3.691 7 O -0.465 6.465 8 C -0.167 4.167 9 C -0.175 4.175 10 C -0.046 4.046 11 H 0.119 0.881 12 C 0.044 3.956 13 H 0.140 0.860 14 C -0.184 4.184 15 C -0.077 4.077 16 N -0.252 5.252 17 C 0.084 3.916 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.194 4.194 21 N -0.574 5.574 22 Si 0.789 3.211 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.188 1.188 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.023 0.977 42 H -0.009 1.009 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.369 0.508 16.483 17.060 hybrid contribution -0.471 0.585 -1.462 1.643 sum -4.841 1.093 15.022 15.820 Atomic orbital electron populations 1.23869 0.95901 1.01756 1.00416 1.22152 0.95594 0.96522 1.00618 1.21203 1.00656 0.93552 1.02717 1.20714 1.00986 0.94300 0.82531 1.46951 1.18802 1.50493 1.14535 1.20373 0.82458 0.77269 0.88967 1.90652 1.27617 1.57877 1.70399 1.21605 1.01560 1.01861 0.91644 1.22090 0.95975 0.99234 1.00171 1.22932 0.90957 0.98035 0.92639 0.88085 1.21761 0.84880 0.93347 0.95583 0.86029 1.23572 0.97905 0.96848 1.00066 1.22762 0.97842 0.90945 0.96147 1.63869 1.48692 1.05918 1.06674 1.19496 0.94139 0.95012 0.82989 1.21516 1.10317 1.32522 0.91730 0.92059 1.25829 0.98760 0.97021 0.97814 1.70070 1.36237 1.46387 1.04733 0.85467 0.79125 0.78879 0.77664 1.20032 1.21142 1.18828 0.89609 0.87654 0.91047 0.91257 0.90043 0.90305 0.87210 0.88264 0.86676 0.93166 0.91525 0.86859 0.92741 0.90088 0.94803 0.97745 1.00878 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.11 13.71 67.79 0.93 -3.18 16 2 C -0.15 -3.06 5.31 -16.48 -0.09 -3.14 16 3 C -0.13 -2.04 8.16 71.24 0.58 -1.46 16 4 C 0.14 2.86 5.29 85.63 0.45 3.31 16 5 N -0.58 -14.32 2.50 -803.12 -2.01 -16.32 16 6 C 0.52 15.33 7.46 87.77 0.66 15.98 16 7 O -0.58 -20.20 15.45 -3.04 -0.05 -20.25 16 8 C -0.13 -3.54 6.08 29.70 0.18 -3.36 16 9 C -0.14 -4.48 3.88 30.60 0.12 -4.36 16 10 C 0.06 1.98 3.49 45.10 0.16 2.13 16 11 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 12 C 0.15 3.63 3.17 46.40 0.15 3.77 16 13 H 0.12 2.44 8.04 -2.39 -0.02 2.42 16 14 C -0.15 -3.67 3.94 31.76 0.12 -3.54 16 15 C 0.05 1.73 6.36 86.67 0.55 2.28 16 16 N -0.53 -20.55 5.14 -864.20 -4.45 -24.99 16 17 C 0.21 10.44 3.10 85.56 0.27 10.70 16 18 C -0.52 -28.44 8.67 25.60 0.22 -28.22 16 19 H 0.06 3.28 7.78 -2.91 -0.02 3.26 16 20 C 0.00 0.21 5.46 84.65 0.46 0.67 16 21 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 22 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 26 H 0.09 2.27 7.41 -2.91 -0.02 2.25 16 27 H 0.11 2.08 8.04 -2.91 -0.02 2.05 16 28 H 0.07 1.31 5.35 -2.39 -0.01 1.30 16 29 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 30 H 0.08 1.05 7.75 -2.39 -0.02 1.03 16 31 H 0.08 1.87 6.98 -2.39 -0.02 1.86 16 32 H 0.11 1.65 7.87 -2.39 -0.02 1.63 16 33 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.05 1.82 6.53 -2.39 -0.02 1.80 16 36 H 0.07 2.54 6.36 -2.39 -0.02 2.53 16 37 H 0.11 2.18 5.29 -2.39 -0.01 2.16 16 38 H 0.05 1.56 6.96 -2.39 -0.02 1.55 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.03 1.34 7.32 -2.39 -0.02 1.32 16 41 H 0.00 0.24 7.27 -2.39 -0.02 0.23 16 42 H -0.03 -1.43 6.74 -2.39 -0.02 -1.44 16 43 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -64.93 325.93 1.56 -63.37 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.99 Total: 15.85 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.76 Total: -8.42 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -6.17 Total: -95.85 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.93 1.56 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.148 kcal (2) G-P(sol) polarization free energy of solvation -64.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds