Wall clock time and date at job start Tue Mar 31 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 119.99857 * 2 1 4 4 N 1.46508 * 109.47070 * 125.00240 * 3 2 1 5 5 C 1.33327 * 117.35960 * 270.01969 * 4 3 2 6 6 O 1.21277 * 118.68241 * 0.22517 * 5 4 3 7 7 C 1.50309 * 122.63896 * 180.24839 * 5 4 3 8 8 C 1.55044 * 109.28107 * 338.70624 * 7 5 4 9 9 C 1.53110 * 108.08081 * 52.82014 * 8 7 5 10 10 H 1.09004 * 112.33552 * 59.18745 * 9 8 7 11 11 C 1.44813 * 117.36049 * 89.99843 * 4 3 2 12 12 H 1.08998 * 110.01112 * 45.55093 * 11 4 3 13 13 C 1.54367 * 111.45634 * 283.19796 * 11 4 3 14 14 C 1.54255 * 104.82994 * 217.00267 * 13 11 4 15 15 N 1.48052 * 106.83392 * 358.54926 * 14 13 11 16 16 C 1.46896 * 111.00102 * 146.61038 * 15 14 13 17 17 C 1.53001 * 109.47230 * 52.97941 * 16 15 14 18 18 C 1.50697 * 109.46995 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 H 1.07999 * 119.99691 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00116 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99877 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47837 * 5.00057 * 3 2 1 30 30 H 1.09004 * 109.47135 * 244.99958 * 3 2 1 31 31 H 1.09004 * 109.47773 * 99.16785 * 7 5 4 32 32 H 1.09004 * 109.47750 * 219.18464 * 7 5 4 33 33 H 1.09003 * 110.77911 * 292.83970 * 8 7 5 34 34 H 1.09002 * 109.36159 * 171.97698 * 8 7 5 35 35 H 1.09003 * 110.36976 * 335.84473 * 13 11 4 36 36 H 1.09007 * 110.36355 * 98.05613 * 13 11 4 37 37 H 1.09001 * 109.98863 * 239.20580 * 14 13 11 38 38 H 1.08998 * 109.98839 * 117.89162 * 14 13 11 39 39 H 1.08998 * 109.47372 * 292.97792 * 16 15 14 40 40 H 1.09006 * 109.47513 * 172.97963 * 16 15 14 41 41 H 1.08998 * 109.47065 * 59.99662 * 17 16 15 42 42 H 1.09001 * 109.46892 * 299.99926 * 17 16 15 43 43 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5428 1.8276 2.2840 6 8 1.3976 2.2231 2.3391 7 6 3.3968 1.9166 3.5177 8 6 4.5713 0.9112 3.4010 9 6 5.2833 1.1649 2.0695 10 1 5.6679 2.1820 1.9925 11 6 4.3288 0.8172 0.9077 12 1 4.7256 1.2049 -0.0305 13 6 4.3436 -0.7263 0.8909 14 6 5.6677 -1.1160 1.5796 15 7 6.3604 0.1467 1.9227 16 6 7.1251 0.0059 3.1690 17 6 8.0490 -1.2093 3.0659 18 6 8.8330 -1.3541 4.3447 19 1 8.6903 -0.6473 5.1486 20 6 9.7364 -2.3861 4.4864 21 7 10.4247 -2.5093 5.6003 22 14 9.9828 -3.6091 3.0960 23 1 11.0574 -3.1229 2.1937 24 1 10.3684 -4.9278 3.6594 25 1 8.7185 -3.7488 2.3298 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.7840 2.9305 3.6194 32 1 2.7975 1.6669 4.3934 33 1 4.2058 -0.1153 3.4286 34 1 5.2684 1.0728 4.2232 35 1 3.4948 -1.1199 1.4503 36 1 4.3248 -1.0947 -0.1348 37 1 6.2824 -1.7051 0.8990 38 1 5.4627 -1.6864 2.4855 39 1 6.4376 -0.1301 4.0038 40 1 7.7220 0.9033 3.3325 41 1 8.7365 -1.0732 2.2311 42 1 7.4521 -2.1066 2.9025 43 1 11.0599 -3.2355 5.7000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:09 Heat of formation + Delta-G solvation = -1.165166 kcal Electronic energy + Delta-G solvation = -22579.116616 eV Core-core repulsion = 19431.854933 eV Total energy + Delta-G solvation = -3147.261683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.20531 -38.81373 -36.14556 -34.38536 -33.06145 -32.71024 -31.44628 -29.09869 -27.91474 -26.49505 -24.56891 -23.97333 -21.91984 -21.48874 -20.17003 -19.28040 -18.29101 -17.01038 -16.79583 -16.75772 -15.93165 -15.35814 -14.94265 -14.65496 -14.33214 -14.10748 -13.87946 -13.65977 -13.37576 -13.11871 -12.61485 -12.50630 -12.38576 -11.96363 -11.83286 -11.58952 -11.52193 -11.47854 -11.19313 -10.93492 -10.87457 -10.69803 -10.19657 -9.85619 -9.82046 -9.81706 -9.49948 -9.25903 -8.88697 -8.58505 -8.02680 -6.09165 -4.07834 1.96687 2.54993 2.97033 3.28244 3.35658 3.38345 4.14926 4.33924 4.41157 4.50288 4.58214 4.72348 4.80498 4.95596 5.00284 5.10307 5.12968 5.23074 5.25168 5.33735 5.38054 5.53528 5.61163 5.67459 5.72275 5.75751 5.83542 6.02139 6.04010 6.07585 6.16944 6.26983 6.33149 6.39889 6.55178 6.66142 7.00784 7.11895 7.31874 7.37565 7.47701 7.77286 8.05637 8.47192 8.94656 9.53032 11.04121 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.004179 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.600244 B = 6697.987657 C = 7244.800202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.176 4.176 3 C 0.132 3.868 4 N -0.589 5.589 5 C 0.521 3.479 6 O -0.555 6.555 7 C -0.132 4.132 8 C -0.154 4.154 9 C 0.057 3.943 10 H 0.104 0.896 11 C 0.144 3.856 12 H 0.095 0.905 13 C -0.143 4.143 14 C 0.038 3.962 15 N -0.511 5.511 16 C 0.054 3.946 17 C -0.011 4.011 18 C -0.522 4.522 19 H 0.071 0.929 20 C 0.068 3.932 21 N -0.902 5.902 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.019 0.981 42 H 0.016 0.984 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 6.448 -11.618 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.195 4.195 3 C 0.010 3.990 4 N -0.320 5.320 5 C 0.310 3.690 6 O -0.433 6.433 7 C -0.172 4.172 8 C -0.192 4.192 9 C -0.052 4.052 10 H 0.121 0.879 11 C 0.039 3.961 12 H 0.113 0.887 13 C -0.182 4.182 14 C -0.090 4.090 15 N -0.235 5.235 16 C -0.073 4.073 17 C -0.048 4.048 18 C -0.561 4.561 19 H 0.089 0.911 20 C -0.133 4.133 21 N -0.541 5.541 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.917 6.699 -11.870 20.955 hybrid contribution -0.157 -1.165 0.060 1.177 sum -16.074 5.534 -11.809 20.699 Atomic orbital electron populations 1.23869 0.95914 1.01889 0.99152 1.23291 0.96319 0.98746 1.01105 1.20633 0.92916 0.96460 0.89011 1.47049 1.12673 1.61185 1.11136 1.20255 0.87819 0.76367 0.84526 1.90691 1.19141 1.49020 1.84479 1.21974 0.97290 1.02078 0.95901 1.22680 0.97188 0.99526 0.99843 1.23070 0.90993 0.98601 0.92495 0.87852 1.21565 0.80796 0.94066 0.99684 0.88692 1.22953 0.98400 0.95133 1.01699 1.22879 0.93092 0.93258 0.99811 1.65163 1.19217 1.04628 1.34450 1.22435 0.95752 1.01152 0.87922 1.19627 0.94747 0.92604 0.97859 1.21051 1.21740 1.13103 1.00175 0.91071 1.25000 0.95252 0.97525 0.95554 1.69910 1.26012 1.32352 1.25849 0.86759 0.78998 0.80709 0.82690 1.20204 1.21470 1.19070 0.88368 0.88529 0.87185 0.89212 0.89823 0.88101 0.88313 0.90712 0.89108 0.91087 0.90680 0.90101 0.92922 0.94125 0.91048 0.96221 0.96565 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 14.32 29.01 0.42 -1.19 16 2 C -0.18 -1.72 9.36 -36.03 -0.34 -2.06 16 3 C 0.13 1.31 5.57 -5.19 -0.03 1.28 16 4 N -0.59 -6.55 2.49 -167.66 -0.42 -6.97 16 5 C 0.52 6.75 7.46 -11.82 -0.09 6.66 16 6 O -0.55 -8.87 16.20 5.56 0.09 -8.78 16 7 C -0.13 -1.46 6.13 -26.99 -0.17 -1.63 16 8 C -0.15 -1.85 4.18 -25.59 -0.11 -1.95 16 9 C 0.06 0.70 3.42 -65.83 -0.22 0.47 16 10 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 11 C 0.14 1.54 3.14 -67.42 -0.21 1.33 16 12 H 0.10 0.93 8.00 -51.93 -0.42 0.52 16 13 C -0.14 -1.57 4.88 -25.36 -0.12 -1.69 16 14 C 0.04 0.54 4.58 -2.53 -0.01 0.53 16 15 N -0.51 -7.75 5.39 -222.32 -1.20 -8.95 16 16 C 0.05 1.00 4.42 -3.83 -0.02 0.98 16 17 C -0.01 -0.24 3.80 -27.88 -0.11 -0.35 16 18 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 19 H 0.07 2.10 7.99 -52.49 -0.42 1.69 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 22 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 26 H 0.10 0.92 7.84 -52.49 -0.41 0.51 16 27 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.11 1.04 6.80 -52.49 -0.36 0.68 16 29 H 0.09 0.98 6.80 -51.93 -0.35 0.63 16 30 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.97 6.57 -51.93 -0.34 0.63 16 34 H 0.09 1.15 6.32 -51.93 -0.33 0.82 16 35 H 0.07 0.81 7.43 -51.93 -0.39 0.42 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.82 6.90 -51.93 -0.36 0.46 16 39 H 0.04 0.74 5.57 -51.93 -0.29 0.45 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.02 0.46 7.58 -51.93 -0.39 0.06 16 42 H 0.02 0.37 5.71 -51.93 -0.30 0.07 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -31.29 329.26 -8.78 -40.07 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.89 Total: 0.11 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.44 Total: -10.51 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.84 Total: -42.53 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.29 -8.78 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.909 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds