Wall clock time and date at job start Tue Mar 31 2020 01:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 119.99857 * 2 1 4 4 N 1.46508 * 109.47070 * 125.00240 * 3 2 1 5 5 C 1.33327 * 117.35960 * 270.01969 * 4 3 2 6 6 O 1.21277 * 118.68241 * 0.22517 * 5 4 3 7 7 C 1.50309 * 122.63896 * 180.24839 * 5 4 3 8 8 C 1.55044 * 109.28107 * 338.70624 * 7 5 4 9 9 C 1.53110 * 108.08081 * 52.82014 * 8 7 5 10 10 H 1.09004 * 112.33552 * 59.18745 * 9 8 7 11 11 C 1.44813 * 117.36049 * 89.99843 * 4 3 2 12 12 H 1.08998 * 110.01112 * 45.55093 * 11 4 3 13 13 C 1.54367 * 111.45634 * 283.19796 * 11 4 3 14 14 C 1.54255 * 104.82994 * 217.00267 * 13 11 4 15 15 N 1.48052 * 106.83392 * 358.54926 * 14 13 11 16 16 C 1.46896 * 111.00102 * 146.61038 * 15 14 13 17 17 C 1.53001 * 109.47230 * 52.97941 * 16 15 14 18 18 C 1.50697 * 109.46995 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 H 1.07999 * 119.99691 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00116 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99877 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47837 * 5.00057 * 3 2 1 30 30 H 1.09004 * 109.47135 * 244.99958 * 3 2 1 31 31 H 1.09004 * 109.47773 * 99.16785 * 7 5 4 32 32 H 1.09004 * 109.47750 * 219.18464 * 7 5 4 33 33 H 1.09003 * 110.77911 * 292.83970 * 8 7 5 34 34 H 1.09002 * 109.36159 * 171.97698 * 8 7 5 35 35 H 1.09003 * 110.36976 * 335.84473 * 13 11 4 36 36 H 1.09007 * 110.36355 * 98.05613 * 13 11 4 37 37 H 1.09001 * 109.98863 * 239.20580 * 14 13 11 38 38 H 1.08998 * 109.98839 * 117.89162 * 14 13 11 39 39 H 1.08998 * 109.47372 * 292.97792 * 16 15 14 40 40 H 1.09006 * 109.47513 * 172.97963 * 16 15 14 41 41 H 1.08998 * 109.47065 * 59.99662 * 17 16 15 42 42 H 1.09001 * 109.46892 * 299.99926 * 17 16 15 43 43 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5428 1.8276 2.2840 6 8 1.3976 2.2231 2.3391 7 6 3.3968 1.9166 3.5177 8 6 4.5713 0.9112 3.4010 9 6 5.2833 1.1649 2.0695 10 1 5.6679 2.1820 1.9925 11 6 4.3288 0.8172 0.9077 12 1 4.7256 1.2049 -0.0305 13 6 4.3436 -0.7263 0.8909 14 6 5.6677 -1.1160 1.5796 15 7 6.3604 0.1467 1.9227 16 6 7.1251 0.0059 3.1690 17 6 8.0490 -1.2093 3.0659 18 6 8.8330 -1.3541 4.3447 19 1 8.6903 -0.6473 5.1486 20 6 9.7364 -2.3861 4.4864 21 7 10.4247 -2.5093 5.6003 22 14 9.9828 -3.6091 3.0960 23 1 11.0574 -3.1229 2.1937 24 1 10.3684 -4.9278 3.6594 25 1 8.7185 -3.7488 2.3298 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.7840 2.9305 3.6194 32 1 2.7975 1.6669 4.3934 33 1 4.2058 -0.1153 3.4286 34 1 5.2684 1.0728 4.2232 35 1 3.4948 -1.1199 1.4503 36 1 4.3248 -1.0947 -0.1348 37 1 6.2824 -1.7051 0.8990 38 1 5.4627 -1.6864 2.4855 39 1 6.4376 -0.1301 4.0038 40 1 7.7220 0.9033 3.3325 41 1 8.7365 -1.0732 2.2311 42 1 7.4521 -2.1066 2.9025 43 1 11.0599 -3.2355 5.7000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:08 Heat of formation + Delta-G solvation = -21.720141 kcal Electronic energy + Delta-G solvation = -22580.007947 eV Core-core repulsion = 19431.854933 eV Total energy + Delta-G solvation = -3148.153014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.19298 -39.91736 -37.13915 -35.69839 -34.67083 -33.66331 -32.92885 -30.50208 -29.03887 -27.33361 -26.21745 -24.93532 -23.26118 -22.69912 -20.94475 -20.63359 -19.23249 -18.99424 -17.75750 -17.75089 -17.00402 -16.47432 -16.27605 -15.89429 -15.44431 -15.40522 -15.20420 -14.75723 -14.61915 -14.28386 -14.08478 -13.68856 -13.32470 -13.29763 -13.13966 -12.78328 -12.68017 -12.48930 -12.44955 -12.19302 -11.90814 -11.83001 -11.72024 -11.63146 -11.54158 -11.31044 -10.77845 -10.73775 -10.32287 -9.80482 -9.26847 -8.28664 -6.32642 1.20867 1.37867 1.38486 1.50296 1.56904 2.09072 2.37010 3.03976 3.07416 3.36976 3.53669 3.63675 3.84642 3.96321 4.04670 4.12829 4.23629 4.26946 4.34218 4.42033 4.44134 4.50542 4.54833 4.74360 4.78091 4.81613 4.83208 4.88497 4.99369 5.00913 5.06324 5.10975 5.23654 5.32765 5.40316 5.52017 5.64021 5.67812 5.81710 5.94863 6.08052 6.30710 6.43284 6.75803 7.08833 7.32249 8.87941 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.004179 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.600244 B = 6697.987657 C = 7244.800202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.183 4.183 3 C 0.130 3.870 4 N -0.583 5.583 5 C 0.517 3.483 6 O -0.589 6.589 7 C -0.125 4.125 8 C -0.147 4.147 9 C 0.057 3.943 10 H 0.115 0.885 11 C 0.151 3.849 12 H 0.117 0.883 13 C -0.131 4.131 14 C 0.034 3.966 15 N -0.513 5.513 16 C 0.067 3.933 17 C -0.004 4.004 18 C -0.530 4.530 19 H 0.034 0.966 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.950 3.050 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.245 1.245 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.019 0.981 42 H 0.021 0.979 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.748 6.198 -14.209 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C 0.008 3.992 4 N -0.312 5.312 5 C 0.307 3.693 6 O -0.471 6.471 7 C -0.165 4.165 8 C -0.186 4.186 9 C -0.052 4.052 10 H 0.133 0.867 11 C 0.046 3.954 12 H 0.134 0.866 13 C -0.170 4.170 14 C -0.094 4.094 15 N -0.237 5.237 16 C -0.060 4.060 17 C -0.042 4.042 18 C -0.569 4.569 19 H 0.052 0.948 20 C -0.191 4.191 21 N -0.592 5.592 22 Si 0.773 3.227 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.169 1.169 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.772 6.455 -14.488 23.084 hybrid contribution 0.084 -1.032 0.932 1.393 sum -16.688 5.424 -13.556 22.174 Atomic orbital electron populations 1.24002 0.96097 1.02308 0.98755 1.23357 0.96468 0.98870 1.01464 1.20761 0.92865 0.96132 0.89455 1.47045 1.12927 1.60220 1.11028 1.20507 0.87460 0.76059 0.85289 1.90681 1.20556 1.50771 1.85069 1.21945 0.96563 1.02662 0.95372 1.22563 0.97286 0.99194 0.99560 1.23179 0.90494 0.98287 0.93209 0.86696 1.21571 0.80173 0.93927 0.99709 0.86569 1.22877 0.96314 0.95173 1.02613 1.22910 0.94581 0.92624 0.99301 1.65076 1.20542 1.05911 1.32125 1.22101 0.95438 0.98859 0.89646 1.19501 0.94905 0.94751 0.95010 1.21422 1.22180 1.12086 1.01207 0.94806 1.25975 0.94995 0.99857 0.98297 1.70066 1.27220 1.33561 1.28367 0.85660 0.79893 0.77754 0.79346 1.19287 1.21251 1.16870 0.88798 0.87403 0.86523 0.90483 0.87186 0.86434 0.88137 0.91802 0.90078 0.91332 0.88299 0.90335 0.94676 0.94382 0.91737 0.96279 0.96112 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 14.32 67.77 0.97 -2.01 16 2 C -0.18 -3.14 9.36 25.64 0.24 -2.90 16 3 C 0.13 2.23 5.57 85.63 0.48 2.71 16 4 N -0.58 -11.45 2.49 -803.56 -2.00 -13.45 16 5 C 0.52 12.54 7.46 87.76 0.65 13.20 16 6 O -0.59 -18.29 16.20 -3.02 -0.05 -18.34 16 7 C -0.13 -2.59 6.13 30.42 0.19 -2.41 16 8 C -0.15 -3.36 4.18 31.33 0.13 -3.23 16 9 C 0.06 1.25 3.42 45.01 0.15 1.41 16 10 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 11 C 0.15 2.73 3.14 46.22 0.15 2.88 16 12 H 0.12 1.74 8.00 -2.39 -0.02 1.72 16 13 C -0.13 -2.46 4.88 31.48 0.15 -2.31 16 14 C 0.03 0.89 4.58 86.51 0.40 1.29 16 15 N -0.51 -14.55 5.39 -857.28 -4.62 -19.18 16 16 C 0.07 2.44 4.42 86.30 0.38 2.82 16 17 C 0.00 -0.18 3.80 29.85 0.11 -0.06 16 18 C -0.53 -29.83 9.66 25.60 0.25 -29.59 16 19 H 0.03 2.09 7.99 -2.92 -0.02 2.06 16 20 C 0.01 0.32 5.47 84.66 0.46 0.78 16 21 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 22 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 25 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 26 H 0.09 1.67 7.84 -2.91 -0.02 1.65 16 27 H 0.11 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.12 1.85 6.80 -2.91 -0.02 1.83 16 29 H 0.08 1.56 6.80 -2.39 -0.02 1.55 16 30 H 0.11 1.31 7.90 -2.39 -0.02 1.29 16 31 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.06 1.60 6.57 -2.39 -0.02 1.59 16 34 H 0.08 2.02 6.32 -2.39 -0.02 2.01 16 35 H 0.07 1.36 7.43 -2.39 -0.02 1.35 16 36 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.03 1.04 6.90 -2.39 -0.02 1.02 16 39 H 0.04 1.39 5.57 -2.39 -0.01 1.38 16 40 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.02 0.85 7.58 -2.39 -0.02 0.84 16 42 H 0.02 0.91 5.71 -2.39 -0.01 0.90 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -68.35 329.26 1.15 -67.20 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.92 Total: 14.55 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 4.71 Total: -17.41 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -6.32 Total: -91.45 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.05 Total: -18.34 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -68.35 1.15 -67.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.475 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds