Wall clock time and date at job start Tue Mar 31 2020 00:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50692 * 119.99765 * 2 1 4 4 N 1.46504 * 109.47058 * 125.00536 * 3 2 1 5 5 C 1.46842 * 124.36971 * 89.97257 * 4 3 2 6 6 C 1.54645 * 105.50620 * 163.16117 * 5 4 3 7 7 C 1.53903 * 101.58593 * 24.76952 * 6 5 4 8 8 C 1.53602 * 110.33109 * 216.22952 * 7 6 5 9 9 C 1.55307 * 102.79692 * 260.44708 * 8 7 6 10 10 C 1.54967 * 101.74193 * 324.95924 * 9 8 7 11 11 N 1.46651 * 110.87868 * 96.54488 * 7 6 5 12 12 C 1.46896 * 110.99906 * 244.26663 * 11 7 6 13 13 C 1.52996 * 109.47256 * 170.00041 * 12 11 7 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.34660 * 124.36698 * 270.01879 * 4 3 2 23 23 O 1.21288 * 125.07369 * 0.83669 * 22 4 3 24 24 H 1.07995 * 119.99960 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99845 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00012 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47790 * 5.00350 * 3 2 1 28 28 H 1.08998 * 109.47307 * 244.99983 * 3 2 1 29 29 H 1.09001 * 110.24150 * 44.14895 * 5 4 3 30 30 H 1.09000 * 110.24259 * 282.16532 * 5 4 3 31 31 H 1.08997 * 111.00493 * 266.69544 * 6 5 4 32 32 H 1.08994 * 111.00345 * 142.84553 * 6 5 4 33 33 H 1.09007 * 110.74233 * 18.77447 * 8 7 6 34 34 H 1.08997 * 110.74552 * 141.93257 * 8 7 6 35 35 H 1.08997 * 110.97600 * 83.08050 * 9 8 7 36 36 H 1.09002 * 110.96755 * 206.80831 * 9 8 7 37 37 H 1.08998 * 110.37623 * 277.83651 * 10 9 8 38 38 H 1.09000 * 110.37356 * 155.49803 * 10 9 8 39 39 H 1.09004 * 109.46774 * 50.00240 * 12 11 7 40 40 H 1.09000 * 109.47723 * 290.00629 * 12 11 7 41 41 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 42 42 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 43 43 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3799 0.8501 1.0764 6 6 5.0789 1.4597 2.3139 7 6 3.8868 1.6911 3.2595 8 6 4.0881 2.9829 4.0657 9 6 4.6106 2.4585 5.4309 10 6 3.8259 1.1305 5.5799 11 7 3.7482 0.5806 4.2072 12 6 2.4827 -0.1353 3.9978 13 6 2.4826 -1.4233 4.8235 14 6 1.1846 -2.1580 4.6082 15 1 0.4347 -1.7475 3.9481 16 6 0.9567 -3.3574 5.2491 17 7 1.8700 -3.8574 6.0526 18 14 -0.6491 -4.2718 4.9763 19 1 -0.7919 -4.6022 3.5355 20 1 -0.6471 -5.5244 5.7740 21 1 -1.7850 -3.4157 5.4028 22 6 2.6880 1.8006 2.3561 23 8 1.6075 2.2443 2.6828 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 4.8631 1.1951 0.1623 30 1 4.4032 -0.2384 1.1284 31 1 5.5667 2.4014 2.0627 32 1 5.7901 0.7564 2.7468 33 1 4.8296 3.6241 3.5888 34 1 3.1434 3.5127 4.1882 35 1 5.6844 2.2752 5.3934 36 1 4.3630 3.1511 6.2354 37 1 2.8260 1.3222 5.9689 38 1 4.3632 0.4436 6.2338 39 1 2.3747 -0.3809 2.9413 40 1 1.6515 0.4968 4.3106 41 1 2.5906 -1.1776 5.8800 42 1 3.3137 -2.0554 4.5107 43 1 1.7095 -4.7010 6.5038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:48 Heat of formation + Delta-G solvation = -4.241791 kcal Electronic energy + Delta-G solvation = -23120.738915 eV Core-core repulsion = 19973.343819 eV Total energy + Delta-G solvation = -3147.395096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11644 -37.64235 -36.26358 -34.38082 -33.58163 -31.88462 -30.75730 -28.48200 -27.84410 -26.23511 -24.47537 -23.28309 -21.56848 -21.18367 -20.15557 -19.62859 -18.50379 -16.81244 -16.41881 -15.94762 -15.40577 -15.05838 -14.69617 -14.41647 -14.33620 -13.78315 -13.55829 -13.36522 -13.28488 -12.65188 -12.51241 -12.21377 -12.12278 -11.80100 -11.68220 -11.32482 -11.21338 -11.11306 -10.95988 -10.79117 -10.73062 -10.51536 -10.45966 -9.82524 -9.78476 -9.33368 -9.25145 -9.10110 -8.58058 -8.30403 -7.78760 -5.96005 -3.97507 2.26305 2.78837 3.30026 3.35619 3.39346 3.42811 4.30579 4.42477 4.50607 4.63847 4.85385 4.97015 4.98209 5.17014 5.25285 5.30606 5.32477 5.37446 5.39925 5.57386 5.68630 5.73087 5.90085 5.94134 5.99313 6.03956 6.05587 6.13542 6.23384 6.39564 6.43916 6.56391 6.65431 6.72452 6.85095 7.00130 7.25773 7.40093 7.46841 7.78930 7.91081 8.09865 8.39672 8.48317 9.08978 9.65544 11.15407 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.006873 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.666324 B = 4072.955868 C = 5415.771021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.157 3.843 4 N -0.619 5.619 5 C 0.104 3.896 6 C -0.115 4.115 7 C 0.065 3.935 8 C -0.123 4.123 9 C -0.126 4.126 10 C 0.044 3.956 11 N -0.496 5.496 12 C 0.050 3.950 13 C 0.034 3.966 14 C -0.518 4.518 15 H 0.052 0.948 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.523 3.477 23 O -0.525 6.525 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.016 0.984 42 H 0.023 0.977 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.587 12.581 -10.355 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C 0.035 3.965 4 N -0.353 5.353 5 C -0.019 4.019 6 C -0.153 4.153 7 C -0.029 4.029 8 C -0.161 4.161 9 C -0.164 4.164 10 C -0.083 4.083 11 N -0.221 5.221 12 C -0.076 4.076 13 C -0.003 4.003 14 C -0.557 4.557 15 H 0.070 0.930 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C 0.309 3.691 23 O -0.400 6.400 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.390 12.305 -10.215 17.618 hybrid contribution -1.648 -0.298 -0.066 1.676 sum 5.742 12.007 -10.280 16.818 Atomic orbital electron populations 1.23866 0.95910 1.01987 0.98624 1.23260 0.96438 0.98786 1.01472 1.20414 0.91796 0.96045 0.88229 1.48346 1.13257 1.62446 1.11240 1.22140 0.80800 0.99942 0.98971 1.22646 0.96961 1.01850 0.93887 1.22032 0.93752 0.93325 0.93781 1.22691 1.01981 0.95489 0.95983 1.22744 1.00389 0.96926 0.96335 1.23143 0.99619 0.94606 0.90982 1.63956 1.36964 1.19476 1.01680 1.22682 0.86893 0.97238 1.00813 1.19009 0.96978 0.89806 0.94516 1.21136 1.01992 1.05440 1.27112 0.93011 1.24964 0.96623 0.97356 0.95248 1.69964 1.33908 1.19827 1.29626 0.86687 0.84220 0.79100 0.78177 1.20302 1.21233 1.20270 1.20897 0.89425 0.76021 0.82728 1.90695 1.25718 1.46307 1.77233 0.88645 0.88137 0.86972 0.90036 0.89901 0.90805 0.90699 0.90356 0.88053 0.90686 0.90553 0.90682 0.90949 0.93123 0.89620 0.92189 0.94814 0.96547 0.95901 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 14.32 29.01 0.42 -1.93 16 2 C -0.18 -2.56 9.85 -36.03 -0.35 -2.91 16 3 C 0.16 2.00 6.37 -5.20 -0.03 1.97 16 4 N -0.62 -9.02 2.77 -173.88 -0.48 -9.50 16 5 C 0.10 1.23 7.36 -2.99 -0.02 1.20 16 6 C -0.12 -1.35 6.42 -25.40 -0.16 -1.52 16 7 C 0.06 1.01 0.99 -132.20 -0.13 0.88 16 8 C -0.12 -1.66 6.05 -25.20 -0.15 -1.81 16 9 C -0.13 -1.63 7.08 -24.47 -0.17 -1.80 16 10 C 0.04 0.76 5.82 -2.13 -0.01 0.74 16 11 N -0.50 -9.27 4.80 -217.43 -1.04 -10.31 16 12 C 0.05 1.16 3.66 -3.83 -0.01 1.15 16 13 C 0.03 0.93 5.02 -27.88 -0.14 0.79 16 14 C -0.52 -15.30 9.11 -34.44 -0.31 -15.62 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 18 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.52 9.26 4.46 -11.13 -0.05 9.21 16 23 O -0.52 -11.21 16.07 5.55 0.09 -11.12 16 24 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 25 H 0.10 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.08 1.09 7.60 -51.93 -0.39 0.69 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.73 7.45 -51.93 -0.39 0.34 16 32 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 33 H 0.07 0.81 7.39 -51.92 -0.38 0.42 16 34 H 0.08 1.16 7.51 -51.93 -0.39 0.77 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.96 7.62 -51.93 -0.40 0.56 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.42 6.79 -51.93 -0.35 1.06 16 40 H 0.03 0.85 6.92 -51.93 -0.36 0.49 16 41 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 42 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -33.84 343.60 -9.01 -42.85 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.23 Total: 0.16 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.24 Total: -7.99 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.79 Total: -46.42 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.84 -9.01 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.607 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds